Use the following button if you want to resubmit the job with
altered input or parameterization:
Input and runtime details for job 3236723 (precomputed example)
Input
Job ID 3236723 (server version 4.3.0)
![]() | Job Submitted & Queued | @ Wed Aug 10 06:55:28 CEST 2016 | |
![]() | Processing Started | @ Wed Aug 10 06:55:39 CEST 2016 | |
![]() | metaMIR Finished & Post-Processing | @ Wed Aug 10 06:57:23 CEST 2016 | |
![]() | Job Completed | @ Wed Aug 10 06:57:23 CEST 2016 |
DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=3236723&toolName=metaMIR ( 30 days expiry )
The job description you specified
Combined differential and core analysis
Output
download complete results
[zip]
Result table
Sort by selecting a column name
Rows: 1-4
all
miRNA | Final Score | Positive Combo | Positive Score | Positive Group | Positive List |
---|---|---|---|---|---|
hsa-miR-6508-5p | 2.218 | SMAD2,SMAD3,TEAD1,TGFBR3,TP73,YAP1 | 2.067 | 6 | 1.9 |
hsa-miR-5681a | 1.813 | BMPR2,SMAD1,SMAD3,TEAD1,TGFBR3,WWTR1,YAP1 | 1.462 | 7 | 1.81 |
hsa-miR-548az-5p | 1.222 | AJUBA,BMPR2,SMAD1,SMAD4,TEAD1,TGFBR3 | 1.197 | 6 | 1.21 |
hsa-miR-4695-5p | 2.307 | BMP2,BMPR2,SMAD1,SMAD3,SMAD4,TEAD1,WWTR1 | 1.17 | 7 | 2.31 |
Result table - repPos
Sort by selecting a column name
Rows: 1-10
11-20
21-23
all
Gene name | Rep |
---|---|
AJUBA | 80 |
BMP2 | 80 |
BMP4 | 10 |
BMP7 | 40 |
BMPR1A | 100 |
BMPR2 | 100 |
MYC | 10 |
NOG | 10 |
SMAD1 | 10 |
SMAD2 | 100 |
Result table - clusterPos
Sort by selecting a column name
Rows: 1-10
11-20
21-30
31-37
all
Gene 1 | Inter | Gene 2 | Norm |
---|---|---|---|
AJUBA | pp | BMP2 | 19 |
BMPR1A | pp | BMPR2 | 23 |
SMAD2 | pp | SMAD3 | 23 |
SMAD4 | pp | TEAD1 | 23 |
TGFB2 | pp | TGFBR1 | 20 |
TGFBR2 | pp | TGFBR3 | 23 |
TP73 | pp | WWTR1 | 18 |
YAP1 | pp | AJUBA | 19 |
BMP2 | pp | BMPR1A | 15 |
BMPR2 | pp | SMAD2 | 20 |
Job resubmission
usability assessment
When using metaMIR please cite :
- Jason A. Davis, Sita J. Saunders, Martin Mann, Rolf Backofen
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data
Nucleic Acids Research, 2017, 45 (15), 8745–8757. - Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.
Results are computed with metaMIR version 1.0.0 using R 3.2.1