Input and runtime details for job 2153353 (precomputed example)

Sequence Parameters

Query sRNA in FASTA

Search Parameters

	Taxon selection		Proteobacteria
	Parameter setup		automatic
	Maximum allowed E-value		1
	Minimum allowed identity [%]		52
	Structure-based clustering		on

Structure-based clustering

	Structure-based filtering		auto
	Manual value for filtering		2

Additional Settings

Include upstream region

Job ID 2153353 (server version trunk)

	Job Submitted & Queued		@ Fri Nov 23 13:30:41 CET 2018
	GLASSgo Started		@ Fri Nov 23 13:32:38 CET 2018
	GLASSgo Finished & Post-Processing		@ Fri Nov 23 15:01:40 CET 2018
	Post-Processing Finished		@ Fri Nov 23 15:02:08 CET 2018
	Job Completed		@ Fri Nov 23 15:02:11 CET 2018

DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=2153353&toolName=GLASSgo ( 30 days expiry )

Description of the job

EcpR1 in Proteobacteria

Output download complete results [zip]

In the following FASTA output, the input sequence is given top-most followed by the identified homologs.
If only the input sequence is shown, no homologs could be found.

>EcpR1_Sinorhizobium_meliloti_1021
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP013051.1:1422247-1422417 Sinorhizobium americanum CCGM7, complete genome-p.c.VAL:81.18%-taxID:1408224
AAAGGAAGTGAGACTTCCACGATCGATCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCTTCCGACATCCGCGGATTCCTCGTGCCGCAGTCGGAGCCAGCCGACCCCCTTTCAAAACGCCGCTTCAAAAGAGGCGGCGTTT
>CP021800.1:c1112462-1112296 Sinorhizobium meliloti strain USDA1021, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP002740.1:974429-974595 Sinorhizobium meliloti BL225C, complete genome-p.c.VAL:100.0%-taxID:698936
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP001830.1:c2256278-2256112 Sinorhizobium meliloti SM11, complete genome-p.c.VAL:100.0%-taxID:707241
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP023063.1:1026656-1026827 Sinorhizobium sp. CCBAU 05631, complete genome-p.c.VAL:78.31%-taxID:794846
TAAGGAAGTGTGACTTCCACGATCGATCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGTTTCCGACATCCGCGGATTCCTCGTGCCGCAGTCGGAGCCAGCCGACCCCCTTTCAAAACGCCGCTTCGGACTGAGGCGGCGTTT
>CP019485.1:1371131-1371297 Sinorhizobium meliloti strain B401 chromosome, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>FO082820.1:1291846-1292010 Rhizobium sp. NT-26 chromosome, complete genome-p.c.VAL:59.62%-taxID:1125847
TAGTTTGCGCGATTTTTAGAGACGAAAGATACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGATCGATTGCATGTCTCGGTTCCTCGTGCCGTATTGCAGTCGGTCGACCCCCAAATAAAAAAGCACCGCTTTCAAGGAAAGCGGTG
>CP021793.1:1041172-1041338 Sinorhizobium meliloti strain USDA1157, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP023067.1:949343-949510 Ensifer sojae CCBAU 05684, complete genome-p.c.VAL:76.32%-taxID:716928
GGAAGTGCCACTTCCATTACCAATTCGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGTTTCCGGCGTCTGCGGATTCCTCGTGCCGCTGCTGGGACCAGCCGACCCCCTTTGAAAACGCCGCTTCGAAAGAAGTTGGCGTT
>CP003933.2:1383304-1383470 Sinorhizobium meliloti GR4, complete genome-p.c.VAL:100.0%-taxID:1235461
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP002781.1:1110062-1110228 Sinorhizobium meliloti AK83 chromosome 1, complete sequence-p.c.VAL:100.0%-taxID:693982
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP016450.1:c1578678-1578511 Sinorhizobium sp. RAC02, complete genome-p.c.VAL:67.84%-taxID:1842534
TGGGCGGCAAACAAGCCCGCACAACCGGTTACCCCATGATGCTAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGTCAGCTGCGACAAATACGGAATCCTCGTGCCGTCGTCGTGTCTGACCGACCCCCATTCAGCGCCGCTCCCGTCAAGGGGGCGGCGTTT
>CP015736.1:1489276-1489441 Shinella sp. HZN7, complete genome-p.c.VAL:66.67%-taxID:879274
TGGGCGGCAAACAAGCCCGCACAACCGGTTACCCCATGATGCTAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGTCAGCTACGACAAATACGGAATCCTCGTGCCGTCGTCGTGTCTGGCCGACCCCCGTTCAACGCCGCTCCCTTCTAGGGAGCGGCGT
>CP021219.1:c3686829-3686663 Sinorhizobium meliloti RU11/001, complete genome-p.c.VAL:100.0%-taxID:1401243
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>HE995405.1:1053842-1054008 Sinorhizobium meliloti Rm41 complete genome-p.c.VAL:100.0%-taxID:1230587
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP013107.1:1435188-1435358 Sinorhizobium americanum strain CFNEI 73, complete genome-p.c.VAL:80.21%-taxID:194963
AAAGGAAGTGAGACTTCCACGATCGATCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCTTCCGACATCCGCGGATTCCTCGTGCCGCAGTCGGAGCCAGCCGACCCCCTTTCAAAACGCCGCCTCAAAAGAGGCGGCGTTT
>HE616890.1:1104750-1104920 Sinorhizobium fredii HH103 main chromosome, complete sequence-p.c.VAL:80.21%-taxID:1117943
AAAGGAAGTGAGACTTCCACGATCGATCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGATTCCGACATCCGCGGATTCCTCGTGCCGCAGTCGGAGCCAGCCGACCCCCTTTCGGAACGCCGCTTCGAAGGAGGCGGCGTTT
>CP007236.1:2283540-2283709 Ensifer adhaerens OV14 chromosome 1 sequence-p.c.VAL:74.09%-taxID:1416753
GCGGGGGCATAGCTTCCATCAGCTTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGTTGGCTTTTGACACCTGCGGAATCCTCGTGCCGCGGTCAGTAGCCAGCCGACCCCCATTCAAAGCGCTGTTCCGGAAGGGACAGCGCTT
>CP019488.1:1395987-1396153 Sinorhizobium meliloti strain B399 chromosome, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP019488.1:1692035-1692201 Sinorhizobium meliloti strain B399 chromosome, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>AL591688.1:1411678-1411844 Sinorhizobium meliloti 1021 complete chromosome-p.c.VAL:100.0%-taxID:266834
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP021812.1:c1658544-1658378 Sinorhizobium meliloti strain M270, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP021808.1:193836-194002 Sinorhizobium meliloti strain Rm41, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP000738.1:1002522-1002690 Sinorhizobium medicae WSM419, complete genome-p.c.VAL:95.35%-taxID:366394
GCGAGGAAGGAAACTTCCACAGCAATCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGATTTGCGGATTCCTCGTGCTGCAACCGGAACCAGCCGACCCCCATTCGAAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP021797.1:c248727-248561 Sinorhizobium meliloti strain USDA1106, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP009144.1:1399641-1399807 Sinorhizobium meliloti strain RMO17, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP003563.1:3505461-3505631 Sinorhizobium fredii USDA 257, complete genome-p.c.VAL:80.65%-taxID:1185652
TAAGGAAGTGTGACTTCCACGATCGATCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGTTTCTGACATCCGCGGATTCCTCGTGCCGCAGTCGGAGCCAGCCGACCCCCTTTCAAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP019584.1:1378388-1378554 Sinorhizobium meliloti strain CCMM B554 (FSM-MA), complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP023070.1:1006893-1007063 Sinorhizobium fredii CCBAU 83666, complete genome-p.c.VAL:80.21%-taxID:1128334
AAAGGAAGTGAGACTTCCACGATCGATCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGATTCCGACATCCGCGGATTCCTCGTGCCGCAGTCGGAGCCAGCCGACCCCCTTTCGGAACGCCGCTTCGAAGGAGGCGGCGTTT
>CP021804.1:c748856-748690 Sinorhizobium meliloti strain T073, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP021822.1:2033440-2033606 Sinorhizobium meliloti strain KH46, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP021825.1:c2174850-2174684 Sinorhizobium meliloti strain KH35c, complete genome-p.c.VAL:98.81%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGATTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP001389.1:1145485-1145656 Sinorhizobium fredii NGR234, complete genome-p.c.VAL:78.31%-taxID:394
TAAGGAAGTGTGACTTCCACGATCGATCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGATTCCGACGTCCGCGGATTCCTCGTGCCGCAGTCGGAGCCCAGCCGACCCCCTTTCGGAACGCCGCTCCGAAGGAGGCGGCGTTT
>CP021818.1:1507687-1507853 Sinorhizobium meliloti strain M162, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP015880.1:1096106-1096274 Ensifer adhaerens strain Casida A, complete genome-p.c.VAL:68.34%-taxID:106592
GGGGCATCCAGCCTTCTGCGATATTCGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGTTGGCTTTTGGCGTCCGCGGAATCCTCGTGCCGCAGTCAGAGGCCAGCCGACCCCCTTTCCGACACGCCGTCCCGCCTTCGGGGCGGCG
>CP021829.1:1882550-1882716 Sinorhizobium meliloti strain HM006, complete genome-p.c.VAL:100.0%-taxID:382
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT
>CP004140.1:1411680-1411846 Sinorhizobium meliloti 2011, complete genome-p.c.VAL:100.0%-taxID:1286640
GCGAGGAAGGAAACTTCCACAGCATTCGGTTACCCCATGATGCTCAGGTCCGCCGCATCTCCTGGGTCGTGGGGTCGGTCGGCTGGCCTCGGACTTGCGGATTCCTCGTGCTGCAACCGGACCAGTCGACCCCCATTCGAAACGCCGCTTCGAAAGAGGCGGCGTTT

Taxonomic tree

The taxonomic tree illustrates the outcome of the GLASSgo result.
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Each taxonomic name has a specific value, which describes the number of summarized GLASSgo hits. These values are also used for scaling the corresponding nodes.

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When using GLASSgo please cite :

Steffen C. Lott, Richard A Schäfer, Martin Mann, Rolf Backofen, Wolfgang R Hess, Bjoern Voss, Jens Georg
GLASSgo - Automated and reliable detection of sRNA homologs from a single input sequences
Frontiers in Genetics, 9, 124, 2018.
Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.

Results are computed with GLASSgo version 1.5.2

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