PA5043 |
-16 |
4 |
-8 |
-2 |
3.68 |
PrrF1 |
70 |
90 |
77 |
83 |
5.87 |
-11.77 |
-21.32 |
-1.17372 |
UGAGGAGUUUCGACUGAUGG&CCCACGCAGUCGGACUCUUCA |
(((((((.((((((((..((&))....))))))))))))))) |
GAAUGCCGGCGCCCUGGCCAGCGACGCUCCGGCGUUGAUGAUCGCCUGCGGCCUGGCGUUGAGGAGUUUCGACUGAUGGCACGGAUCAACCUUCUACCCUGGCGCGAAGAGCUGCGCGAGCAGCGCAAGCAGCAGUUCCUGGUGAUUCUU |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0179059 |
0.9556607 |
pilN |
881025 |
type 4 fimbrial biogenesis protein PilN |
PA1205 |
-16 |
-3 |
-9 |
-3 |
5 |
PrrF1 |
104 |
119 |
104 |
110 |
2.23 |
-11.66 |
-18.89 |
-1.16275 |
ACCGGAGAGCCUGA&UCAGGCUAAUCACGGU |
((((((.(((((((&)))))))..)).)))) |
GCAGCAGUUGCAGGCCCUGCAGCUAUGGGUGCGCCGCCUGCGCGGUUGAAUGCCUCGUCACCGGAGAGCCUGAACAUGAGCAAUACCGAAGAGCGUUGCGACCUGUCCUCCUCGCGGGACUGUCCGGAACGCCACGAACACCUGCUGCAA |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0190852 |
0.9556607 |
|
882088 |
quercetin 23-dioxygenase |
PA4430 |
-16 |
4 |
-6 |
1 |
7.87 |
PrrF1 |
101 |
119 |
104 |
110 |
2.24 |
-11.46 |
-21.57 |
-1.14281 |
ACCAGGAGAAAGCCUGAUGA&UCAUCAGGCUAAUCACGGU |
(((..((...((((((((((&))))))))))..))..))) |
GAACCUGCCGAUUCCGCCUUAUACGUUCGAUGCUGACGACGUCAUCACCAUCGGCGUGGACCAGGAGAAAGCCUGAUGAACAAGUUCAUGGCUUGGGUCGAUGCGCGUUUUCCCGCGACCAAGAUGUGGGAAGACCAUCUGAGCAAGUAC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0214121 |
0.9556607 |
|
880944 |
cytochrome b |
PA4456 |
-16 |
5 |
-4 |
3 |
5.39 |
PrrF1 |
100 |
119 |
102 |
108 |
2.24 |
-11.27 |
-18.9 |
-1.12386 |
AUCGCAAGGAGUCCUGAUGAG&CUCAUCAGGCUAAUCACGGU |
((((.....((.(((((((((&))))))))))).....)))) |
GACCCCUCCGGGAUGCGUGCCUUUGCAACGGGGCAAGGCGUCCAGCAUGGACGGGUCGCAUCGCAAGGAGUCCUGAUGAGCACCGAUAGUGCCUACGCGGUCGAGUUGAAGGGCCUGACCUUCAAGCGCGGAUCGCGGGCGAUUUUCGAC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0238588 |
0.9556607 |
|
881000 |
ABC transporter ATP-binding protein |
PA1551 |
-15 |
5 |
-3 |
4 |
9.13 |
PrrF1 |
100 |
118 |
101 |
107 |
2.24 |
-14.25 |
-25.62 |
-1.42103 |
CCGUGGUACGCACUGAUGAG&CUCAUCAGGCUAAUCACGG |
(((((((..((.((((((((&))))))))))..))))))) |
AGUAGGCGUGCAACUAUUUUCUGACCCUGUCGGCAUGUACCGGCCGGGCGCCCCCCACUGCCGUGGUACGCACUGAUGAGCAAACAGAUUCCCGUUCAAGACGUCACCCCGCCUGCCAAGGGCGACACCAAUAACAACGAUCUCUACGCC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0038469 |
0.8677507 |
|
883008 |
ferredoxin |
PA3988 |
-14 |
4 |
-6 |
1 |
4.53 |
PrrF1 |
101 |
116 |
104 |
110 |
2.14 |
-11.14 |
-17.81 |
-1.1109 |
GUGAGGGAAGCUUGAUGA&UCAUCAGGCUAAUCAC |
((((....((((((((((&))))))))))..)))) |
GCCAACUGAUACGCGAUUCCAUUGGACGCCCCCGGCCAUCCGGGGGCGCUGAUCAACAGGAGUGAGGGAAGCUUGAUGAAACGUAUCCUGACCAGCGCCGCGCUGAUCGGUAUGACCACCCUGCUGGCCGCCUGCGGCUUCCAACUGCGC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0256763 |
0.9556607 |
|
878911 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
PA5164 |
-13 |
4 |
-3 |
4 |
2.89 |
PrrF1 |
101 |
121 |
101 |
107 |
2.24 |
-14.59 |
-19.72 |
-1.45494 |
AGACCGUGUACUGAUGA&UCAUCAGGCUAAUCACGGUUU |
((((((((..(((((((&)))))))......)))))))) |
AAAACUCGCCGCGCCGCUGGCCAAGAACGGCUACGGCCAAUACCUCAAGCGCCUGCUGACCGAGACCGUGUACUGAUGAAAGCGACCCGCCUGGCAAUUCCCGACGUCAUCCUCUUCGAACCCCGGGUGUUCGGCGACGAUCGCGGAUUC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0030663 |
0.7262532 |
rmlC |
879991 |
dTDP-4-dehydrorhamnose 35-epimerase |
PA0916 |
-13 |
-1 |
-8 |
-2 |
2.41 |
PrrF1 |
107 |
119 |
108 |
114 |
2.23 |
-13.58 |
-18.22 |
-1.35422 |
ACCGAGGUUAGCC&GGCUAAUCACGGU |
((((.((((((((&)))))))).)))) |
CGCGGCGCUGCCGCUAGAAUUGCGCACUUUUUGAUCAGAGGCGCCAGCAAGCGCGCCCGCCUACCGAGGUUAGCCAUGUCCACCCCCACUCCCAAAGUCGGCUUCGUCAGUCUUGGAUGCCCCAAGGCGCUGGUCGACUCCGAGCGCAUC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.005944 |
0.9377188 |
|
880629 |
ribosomal protein S12 methylthiotransferase RimO |
PA3974 |
-13 |
33 |
27 |
33 |
13.63 |
PrrF1 |
43 |
79 |
43 |
49 |
17.62 |
-11.84 |
-43.09 |
-1.1807 |
ACUGCGGGGCAUCAUGCGGCACUGGCUGAUUCUCUUUCUUCUUGCG&CGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGU |
(((((((((..((...(((((((((((((..........(((((((&))))))))))))))))..)))).))..))).)))))) |
ACAACGCUCGCCAAGGGCGGACCAUGACAAGGGAGGUGGGGCUCCCGGUCCGUUCGAGGAGCACUGCGGGGCAUCAUGCGGCACUGGCUGAUUCUCUUUCUUCUUGCGUUGCCGUGCCUGGCGGGUGCGGUGAGCUUCAACGAGCAGGUC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0171905 |
0.9556607 |
ladS |
878890 |
lost adherence sensor LadS |
PA2967 |
-13 |
21 |
3 |
9 |
6.98 |
PrrF1 |
68 |
101 |
80 |
86 |
9.23 |
-11.7 |
-27.91 |
-1.16674 |
AGGAGAGAAUCCCAUGAGUCUGCAAGGUAAGGUC&GACCCACGCAGUCGGACUCUUCAGAUUAUCUCCU |
((((((.((((....(((((((....((..((((&)))).)).....)))))))....)))).)))))) |
AUGGCCUGGAUGGCGUCGAGGCGUUCGCCGCCACGCGCGCCGCCCUGGCCUGAGAGAGAGAAAGGAGAGAAUCCCAUGAGUCUGCAAGGUAAGGUCGCAUUGGUAACCGGCGCCAGCCGUGGCAUCGGCCAGGCGAUUGCGCUGGAACUG |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0186484 |
0.9556607 |
fabG |
880433 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |