PA2528 |
-24 |
-7 |
-16 |
-10 |
3.03 |
PrrF1 |
101 |
118 |
104 |
110 |
2.24 |
-12.57 |
-17.84 |
-1.2535 |
CCGUUCUAAGCCUGAAGA&UCAUCAGGCUAAUCACGG |
((((....(((((((.((&)).)))))))....)))) |
GCUUUGCCUGGGCCCCUGCAAUGCUUAUCGUGCAGCCUGGAAAAAGCGCCUCCGUUCUAAGCCUGAAGAAGAACCAUGACUCCAACGACCGGUAAAUCCAAGUUCCGUACCCUGCGCCCGUGGCUGAUCACCGCCCUGGCCUUCGCCGCC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0111375 |
0.9556607 |
|
882937 |
resistance-nodulation-cell division (RND) efflux membrane fusion protein |
PA5489 |
-23 |
26 |
12 |
18 |
9.41 |
PrrF1 |
6 |
53 |
14 |
20 |
18.7 |
-11.08 |
-39.19 |
-1.10492 |
CUGACCUCGCCUAGGAGUGAACGAUGCGUAACCUGAUUCUCACCGCCAU&AUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAG |
((((.(((((((((((((((......(((((..(((((((((...((((&))))...)))))))))...)))))))))))..))))..))))).)))) |
GACCGCUCCCCCCGGUCGAACUGACCGGGCCGAACCCGGCCGGAGAGCGGCACUGACCUCGCCUAGGAGUGAACGAUGCGUAACCUGAUUCUCACCGCCAUGCUGGCCAUGGCCAGCCUGUUCGGCAUGGCCGCCCAGGCCGACGACUAU |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0265569 |
0.9556607 |
dsbA |
877731 |
thiol:disulfide interchange protein DsbA |
PA1477 |
-23 |
7 |
-5 |
2 |
8.62 |
PrrF1 |
98 |
123 |
103 |
109 |
2.24 |
-12.15 |
-23.01 |
-1.21162 |
AAGAGCCCUGUAAACAGAGCCUGAUGAUGA&UCCUCAUCAGGCUAAUCACGGUUUUU |
(((((((.((.......((((((((((.((&)).))))))))))...)).))))))) |
GCCGCCCACGCUUGACCCGGGCUGGCAGCGGAAGGUCUGCCCGGUAUUUCCAAAGAGCCCUGUAAACAGAGCCUGAUGAUGAAUUGGACAUGGUUUCACAAGCUUGGGUCGCCCAAGUGGUUCUACGAGAUCAGCGGCCGCUGGCUGCCC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0143251 |
0.9556607 |
ccmC |
881087 |
heme exporter protein CcmC |
PA4236 |
-22 |
-7 |
-13 |
-7 |
5.8 |
PrrF1 |
96 |
112 |
96 |
102 |
4.92 |
-11.12 |
-21.84 |
-1.1089 |
UUAGCCGUUGAGGAGA&UCUCCUCAUCAGGCUAA |
((((((..((((((((&))))))))...)))))) |
AAUCCCUGGUCCACGCUGAUGAUUUCCGUGUAGCCGCUUCGCUUCAUAGCACGUUAGCCGUUGAGGAGAGAGUAAAUGGAAGAGAAGACCCGCCUGACCACUGCCGCUGGCGCACCGGUGGUCGAUAACCAGAACGUGCAGACCGCCGGU |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0259669 |
0.9556607 |
katA |
881831 |
catalase |
PA4812 |
-21 |
-7 |
-21 |
-15 |
5.23 |
PrrF1 |
96 |
109 |
103 |
109 |
4.82 |
-13.84 |
-23.89 |
-1.38015 |
GCCUGAUGCAGGAGA&UCUCCUCAUCAGGC |
((((((((.((((((&)))))))))))))) |
CCAGGCUGGCUAUCUUUUAACCAGAGACAUCCGGCCAUGUCCCGGGUGUCCUUUGCCUGAUGCAGGAGAUGCACGAUGGAUAUGAACCGUCGGCAAUUCUUCAAGGUCUGCGGUAUAGGCCUUGGAGGAUCGAGCCUUGCGGCGCUCGGG |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0050296 |
0.9377188 |
fdnG |
880124 |
formate dehydrogenase-O major subunit |
PA1069 |
-21 |
22 |
-21 |
-15 |
10.74 |
PrrF1 |
71 |
109 |
103 |
109 |
12.9 |
-13.51 |
-37.15 |
-1.34724 |
GCCUGAUGGAGACUGAAGCAUAUGGAUAUCUGGAACUGGGUGG&CCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGC |
((((((((((((((((((..........((((..((((.((((&)))).))))))))..))))))....))))..)))))))) |
GGACUCGCCGAUUCGGUGAAGCGCCUGCUGGAGCAAUAAGAAAAUUCGCAACACGCCUGAUGGAGACUGAAGCAUAUGGAUAUCUGGAACUGGGUGGAGAAGCUCCGCGCCGACCUGCGUGAGGCCGGCCAGGAGCAGAGUGCGCGGCUG |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.006215 |
0.9377188 |
|
877949 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
PA5490 |
-20 |
41 |
35 |
41 |
15.31 |
PrrF1 |
67 |
120 |
67 |
73 |
14.03 |
-16.18 |
-45.52 |
-1.6135 |
AGCCGUAAUUGGAUUAGCUGAUGAACAAACUUCUCGUGAGUCUGCUGUUGACCCUGGGUCU&AGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUU |
((((((.....(((((((((((((.......(((...((((((((((.......(((((((&)))))))..))).)))))))...)))........)))))).))))))))))))) |
GCAACCAUCCAGUGGAUGGUGAAGAAGUAGCCGAAGCCCACUAUCUUUCACCCUUAGCCGUAAUUGGAUUAGCUGAUGAACAAACUUCUCGUGAGUCUGCUGUUGACCCUGGGUCUGACCGGCCUUGCCCAUGCCGCUGGCGAUGCCGCC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0010019 |
0.5771389 |
cc4 |
877732 |
cytochrome C4 |
PA2147 |
-18 |
-9 |
-18 |
-12 |
0.99 |
PrrF1 |
96 |
105 |
99 |
105 |
3.62 |
-12.6 |
-17.21 |
-1.25649 |
GAUGAGGAGA&UCUCCUCAUC |
((((((((((&)))))))))) |
GCGCAGUGAAGUGAAUGGGGCGGAGCAGGGAGGCAUCCGCCCCAUUUUCAUGCCCAGGAUGAGGAGAGGAAACCGAUGAGCGAGCAGAACAACGAGCAGCGCAGCCAGGCGGCCGGCACCGACACCGUCGACCGUGGCAACAGCAACGCC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0109368 |
0.9556607 |
katE |
881554 |
catalase HPII |
PA5043 |
-16 |
4 |
-8 |
-2 |
3.68 |
PrrF1 |
70 |
90 |
77 |
83 |
5.87 |
-11.77 |
-21.32 |
-1.17372 |
UGAGGAGUUUCGACUGAUGG&CCCACGCAGUCGGACUCUUCA |
(((((((.((((((((..((&))....))))))))))))))) |
GAAUGCCGGCGCCCUGGCCAGCGACGCUCCGGCGUUGAUGAUCGCCUGCGGCCUGGCGUUGAGGAGUUUCGACUGAUGGCACGGAUCAACCUUCUACCCUGGCGCGAAGAGCUGCGCGAGCAGCGCAAGCAGCAGUUCCUGGUGAUUCUU |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0179059 |
0.9556607 |
pilN |
881025 |
type 4 fimbrial biogenesis protein PilN |
PA1103 |
-16 |
54 |
-16 |
-10 |
20 |
PrrF1 |
38 |
102 |
96 |
102 |
22.18 |
-17.95 |
-60.13 |
-1.79 |
GAGGAGAUGAUCUGAGGUGGUCCCCCACGACAAGGACAAAGACAAUCCCAGCGAACUGAUCCGCGGCAAG&CUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUC |
(((((((((((((((((..((((...((.....((..........((.((((...((((((((((((.((&)).)))))).)))))).......)))).))...)).....)).)))).))))))))))))))))) |
UCACCAUUGCCCGGCGCAUGGCCGAGUCCGGCGAUAUCGUGCUGGGCGGCAAGGGUGGCGAGGAGAUGAUCUGAGGUGGUCCCCCACGACAAGGACAAAGACAAUCCCAGCGAACUGAUCCGCGGCAAGGACGUGGCGGCCUUCGGCCUC |
UUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAGCCGGUAAGCUGAGAGACCCACGCAGUCGGACUCUUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCACUUUGCCGGGUCUUUUUUU |
0.0002537 |
0.246324 |
|
880874 |
flagellar assembly protein FliH |