b2823 |
42 |
60 |
42 |
48 |
6.85 |
RyhB |
40 |
58 |
52 |
58 |
3.21 |
-14.06 |
-24.12 |
-1.47837 |
GGAGGUAAUGUUGGCGAUG&CAUUGCUCACAUUGCUUCC |
(((((((((((..((((((&))))))..))))))))))) |
CGAAGUCAUUGAUGGAAACAUUGUUUUUUCGCCACGCGGCUGGAGCGAUUUUUGUCCGCUGAAAGAGAGGGCGUUAUGUCAGCUUCCCUGAAGAAUCAACAAGGCUUUAGCCUGCCGGAGGUAAUGUUGGCGAUGGUGUUGAUGGUGAUG |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0052703 |
0.9291058 |
ppdC |
945797 |
putative prepilin peptidase-dependent protein |
b1784 |
-16 |
-2 |
-8 |
-2 |
3.44 |
RyhB |
52 |
66 |
52 |
58 |
2.89 |
-12.31 |
-18.64 |
-1.29437 |
GUAGUACGGGGGGCA&UGCUUCCAGUAUUAC |
(((((((.(((((((&))))))).))))))) |
CGACAGCGAACCGUGGGCCUGAGAAGCGGCAACACAGGCGUAGCAUACAGUUGGCAAAUGUAGUACGGGGGGCAUAUGACCUGGUUUAUUGACCGGCGUCUGAACGGCAAAAACAAAAGCAUGGUGAAUCGCCAGCGUUUUUUACGCCGU |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0139638 |
0.9496255 |
yeaH |
946296 |
UPF0229 family protein |
b0528 |
57 |
74 |
58 |
64 |
3.72 |
RyhB |
42 |
61 |
54 |
60 |
3.3 |
-13.77 |
-20.79 |
-1.44788 |
ACUGGAAGGCUGGAGCGA&UUGCUCACAUUGCUUCCAGU |
((((((((..((((((((&)))))).))...)))))))) |
CGAUGACGGUUGCCACGCUGAUUGAAAACACGCUACAGGCGUGCGUUGAAUAUCAUGAUCCACAGGAUGAGUAACAUGGCGACAUUUUCUUUAGGUAAACAUCCGCACGUUGAGCUGUGCGACUUGCUGAAACUGGAAGGCUGGAGCGAA |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0062158 |
0.9291058 |
ybcJ |
945158 |
ribosome-associated protein putative RNA-binding protein |
b1013 |
-75 |
-34 |
-47 |
-41 |
10.22 |
RyhB |
7 |
44 |
14 |
20 |
13 |
-12.26 |
-35.48 |
-1.28911 |
CGAUGAGAGUGCAGAAGGUCGAGGCCGGGCGGGGGUUUUGCU&AGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUG |
(((((...((((...((((.....((..(((((((((((.((&)).)))))))))))))...))))....))))..))))) |
CGAUGAGAGUGCAGAAGGUCGAGGCCGGGCGGGGGUUUUGCUAUCCUGUUGCCAAUCUACAAGAGGGGAGAGCGCAUGACGCAAGGCGCAGUGAAAACAACGGGUAAACGUUCGCGCGCAGUAAGCGCGAAGAAAAAAGCGAUUCUUAGC |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0143473 |
0.9496255 |
rutR |
945075 |
rut operon transcriptional repressor for |
b0681 |
57 |
71 |
58 |
64 |
3.86 |
RyhB |
32 |
46 |
39 |
45 |
5.54 |
-10.92 |
-20.32 |
-1.14821 |
AGCAAUGUCGGGCUU&AAGCACGACAUUGCU |
((((((((((.((((&)))).)))))))))) |
CGCUACUUUUUUAAUUUUUAUUUUUUCGCUGUUCACCUUUGGUGCAGCAAUUUAUACGUCAAAGAGGAUUAACCCAUGCGUACGUUUAGUGGCAAACGUAGUACGCUGGCGCUGGCUAUCGCCGGUGUUACAGCAAUGUCGGGCUUUAUG |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0291917 |
0.9496255 |
chiP |
945296 |
chitoporin uptake of chitosugars |
b0556 |
-10 |
11 |
1 |
7 |
5.95 |
RyhB |
39 |
58 |
43 |
49 |
3.21 |
-12.89 |
-22.05 |
-1.35535 |
GGGGGCAACAGUGAGCAGAGU&ACAUUGCUCACAUUGCUUCC |
((((((((..(((((((..((&))..))))))).)))))))) |
CGCUGGCGGUAAGCAAUGGAAAGGCCUGAUGACUCGUCGUGAGAUUGAGCGUGAAGUCUGUUUGUGGGGGCAACAGUGAGCAGAGUAACCGCGAUUAUAUCCGCUCUGAUUAUCUGCAUCAUCGUCAGCCUGUCAUGGGCGGUCAAUCAU |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0101674 |
0.9496255 |
rzpD |
945929 |
DLP12 prophage putative murein endopeptidase |
b3902 |
43 |
75 |
61 |
67 |
8.05 |
RyhB |
57 |
89 |
67 |
73 |
13.55 |
-11.97 |
-33.57 |
-1.25862 |
AAAGCCACCACCGACGCCUGGCUGAAAGGCUGG&CCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUU |
(((((((.((((..((.((((((((((..((((&))))..))..)))))))).)))))).))))))) |
CGGAUGCGGCGCGAGCGCCUUAUCCGGCCUACGGGUCGUGCAUCCGACAACACCGAAUUUACAGGAACACAGAACAUGCAAAACAUUACUCAGUCCUGGUUUGUCCAGGGAAUGAUCAAAGCCACCACCGACGCCUGGCUGAAAGGCUGG |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0167745 |
0.9496255 |
rhaD |
948401 |
rhamnulose-1-phosphate aldolase |
b1120 |
-17 |
5 |
-7 |
-1 |
9.07 |
RyhB |
46 |
68 |
52 |
58 |
3.24 |
-14.88 |
-27.19 |
-1.5646 |
AAGUGGUGCCGGAAGCAAUGGA&UCACAUUGCUUCCAGUAUUACUU |
(((((((((.((((((((((((&)).)))))))))).))))))))) |
CGUAAAAAUAAACGCCGCCUGCGCGAGCGUUUGCGUCAGCGUAUUUUUUUCAGAGAUAAAGUGGUGCCGGAAGCAAUGGAAAAACCAAGAGUACUCGUACUGACAGGGGCAGGAAUUUCUGCGGAAUCAGGUAUUCGUACCUUUCGCGCC |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0032796 |
0.9291058 |
cobB |
945687 |
deacetylase of acs and cheY chemotaxis regulator |
b2155 |
-55 |
-41 |
-50 |
-44 |
3.08 |
RyhB |
41 |
57 |
44 |
50 |
3.2 |
-11.36 |
-17.64 |
-1.19448 |
GAAGAUGUGAGCGAU&AUUGCUCACAUUGCUUC |
(((((((((((((((&)))))))))))..)))) |
CGUACGCAAGGGGACGUGAAGAAGAUGUGAGCGAUAACCCAUUUUAUUUUCGUAGUUACCUCAUGGAGAUAUGGAAUGUUUAGGUUGAACCCUUUCGUACGGGUCGGGCUGUGUUUGUCCGCUAUUUCUUGUGCAUGGCCUGUGUUAGCG |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0231967 |
0.9496255 |
cirA |
949042 |
colicin IA outer membrane receptor and translocator ferric iron-catecholate transporter |
b4547 |
-4 |
42 |
8 |
14 |
11.38 |
RyhB |
38 |
88 |
70 |
76 |
14.91 |
-12.44 |
-38.73 |
-1.30804 |
AAGCAUGGACUGGCUGGCUAAAUAUUGGUGGAUUCUGGUGAUUGUC&GACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUU |
((((.....(((((((((((((((((((.......((((((.((((&)))))))).))........))))))))...)))))))))))......)))) |
CUACUUGCCCGUAUGUAUCAACGUAUCAUGGAACAGCUCGUCGCCUGAUGAGUGGUUCUGCAAGAGGAAAUAAGCAUGGACUGGCUGGCUAAAUAUUGGUGGAUUCUGGUGAUUGUCUUUUUGGUAGGCGUCCUGCUGAACGUGAUUAAA |
GCGAUCAGGAAGACCCUCGCGGAGAACCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUACUUAGCCAGCCGGGUGCUGGCUUUU |
0.0130116 |
0.9496255 |
ypfN |
1450286 |
putative membrane protein UPF0370 family |