Input and runtime details for job 7119295 (precomputed example)

Sequence Parameters

	Query ncRNA (short) in FASTA		[.fa]
	Index first query position		1
	Target RNA (long) in FASTA		[.fa]
	Target NCBI RefSeq ID		NC_005072
	All replicons		yes
	Extract sequences around		start codon
	nt upstream (1-300)		75
	nt downstream (1-300)		75
	Index first target position		-75

Output Parameters

	Number of interactions per RNA pair		1
	Suboptimal interaction overlap		can overlap in query
	Max. interaction length		not provided
	Max. absolute energy of an interaction		0
	Max. delta energy above mfe of an interaction		100
	No lonely base pairs		yes
	No GU at helix ends		yes

Seed Parameters

	Min. number of basepairs in seed		7
	Max. Number of mismatches in seed		0
	Maximal energy		0
	Minimal unpaired probability (per RNA)		0
	Seed position (query)		not provided
	Seed position (target)		not provided
	Ignore seeds with GU base pairs		no
	Ignore seeds with GU ends		yes

Folding Parameters

	Temperature for energy computation		37.0
	Access. query: folding window size		150
	Access. query: max. basepair distance		100
	Access. target: folding window size		150
	Access. target: max. basepair distance		100
	Energy parameter set (Vienna package)		Turner model, 2004

Job ID 7119295 (server version trunk)

	Job Submitted & Queued		@ Mon Jan 27 14:23:26 CET 2020
	IntaRNA Started		@ Mon Jan 27 14:25:03 CET 2020
	IntaRNA Finished & Post-Processing		@ Mon Jan 27 14:25:25 CET 2020
	Post-Processing Finished		@ Mon Jan 27 14:26:09 CET 2020
	Job Completed		@ Mon Jan 27 14:26:17 CET 2020

DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=7119295&toolName=IntaRNA ( 30 days expiry )

Description of the job

Yfr1 - Prochlorococcus marinus

Output [zip]

Downloadable files

	IntaRNA result table:		[csv]
	Target region plot		[png] [pdf]
	Query region plot		[png] [pdf]
	Functional enrichment file		[txt]
	Functional annotation chart		[html] [pdf] [png]

Target region plot

Query region plot

Function

Identified Interactions for NC_005072 Prochlorococcus marinus subsp. pastoris str. CCMP1986

Sort by selecting a column name.

Target	Start(T)	End(T)	Start(seed-T)	End(seed-T)	ED(T)	Query	Start(Q)	End(Q)	Start(seed-Q)	End(seed-Q)	ED(Q)	Energy	E(hybrid)	E_norm	RRI subseqs	RRI details	Seq(T)	Seq(Q)	p-value	fdr	gene	geneID	annotation
PMM1312	-61	-55	-61	-55	3.37	Yfr1	20	26	20	26	1.88	-6.14	-11.39	-0.674356	GAGGAGU&ACUCCUC	(((((((&)))))))	AAAAAAAAAACAUAGAGGAGUUUUAAAAAUAAAAUCUUUAUUUACUCAAUUAAUAAAUCCUAGUAGAUUAUAUAUAUGACGGAUAUCUUAGUACUAAUUUUAUUUGUAUUGUCUGGAGCGGCAUCAGGAUGGCUUGGGGUUGAUCUUCUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1747091	0.8751146		1726974	PIN domain superfamily protein
PMM0173	41	68	43	49	7.38	Yfr1	20	38	30	36	2.28	-10.31	-19.97	-1.13235	GGUUUGGUGAUUGUGACUCUGCAGGAGU&ACUCCUCACACACCAAAUC	(((((((((..((((.......((((((&)))))))))))))))))))	AAAAAUAGCUGAUAUUAUGGCAAUCCUUGGCUCAAUAGACGUCAUUAUGGGUUCUGUAGACAGGUAAACCUUUUAAUGAAACCUAAAAAUUGGUUGAUUUUAAAAAGGAAAGUAAGGUUUGGUGAUUGUGACUCUGCAGGAGUGAUACAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0097181	0.8607323		1726254
PMM1278	60	70	60	66	2.05	Yfr1	28	38	32	38	0.34	-7.49	-9.88	-0.822627	GAUUUGGGGUG&CACACCAAAUC	(((((((..((&))..)))))))	AAACGUUAAAACAUCUUUGAAUACAAAUGUUAAUCCUUUUGAAUUAAUUUAUGAAGGAGAGUUAGUUAAACAAGGAUGAAUUUAGAUAUUAGGUUUGACUUCCAGAGAAGAGGAAGAAUUGGACUUAUUGAAGCGAUUUGGGGUGCAGAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0809124	0.8607323		1726920	circadian phase modifier CpmA-like protein
PMM0487	67	73	67	73	2.91	Yfr1	32	38	32	38	0.34	-4.95	-8.2	-0.543659	GAUUUGG&CCAAAUC	(((((((&)))))))	AAAGUAUAGAAUUGAUUAUUAUUGUCAAUUUCUAAUCACUUGAAUUCUUAUUUAUUCAAAAAUUUAUAAAGGAUUAUGGAAGAAAUUUUAAUUGAGUGUUCUCCUGGGGUCUCUGGAGAUAUGUUAUUGGGCGCUUUUUAUGAUUUGGGG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3069599	0.8751146		1725719
PMM0538	2	9	2	8	5.56	Yfr1	20	27	21	27	1.88	-4.7	-12.14	-0.516201	UGAGGAGU&ACUCCUCA	((((((((&))))))))	AAAGUUUUGGUCUCAAGCAUAUCUUUAUCUUAUAGGUAGAAUUAAUAUUAUUUGUAAAUAUAACGGAGAUUAUUUUUGAGGAGUUUGCAAAUUUUUAAAGUAAAGGGAAUUCCCUUUAAAUUACAUCCUUACUGGUUUGCAAUCCUUUUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3408079	0.8751146		1727135
PMM0417	-71	-63	-69	-63	2.71	Yfr1	28	36	28	34	0.34	-9.92	-12.97	-1.08951	UUUGGUGUG&CACACCAAA	(((((((((&)))))))))	AAAUUUUGGUGUGAUUUAUAUCUAAAAGGGAUUAGGUUUAUAUUUAAUUUCCUCUUUACUAAUUAAUUUAAAUUUAUGACAGGGUUUUUAUAUUUUUUGGGAAAUACUUUGAGAUGGCCCGCUUUAAAACCAAAAGAAUUUUUUUCUUUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0136924	0.8607323		1726396
PMM1689	24	32	26	32	4.22	Yfr1	20	29	20	26	1.88	-5.58	-11.68	-0.612851	UGGAGGAGU&ACUCCUCACA	(((((((((&))))))).))	AACUAUUUAUGGAUGAUCAAUAAAUUUUUUGUUUAAAUAAAGUAUAAGGAGGUUGUGCUUAAUUAAAAAUAUUGCAUGUCAAAGUUUGUUUUUGUUACUGGAGGAGUCGUUUCUAGCAUAGGUAAAGGUAUUGUUGCCGCAAGCUUAGGA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2308453	0.8751146	pyrG	1727199	CTP synthetase
PMM0017	23	29	23	29	4.39	Yfr1	29	35	29	35	0.32	-4.48	-9.19	-0.492038	UUGGUGU&ACACCAA	(((((((&)))))))	AAGAAGAUAUUGAUUCAGAGAAUCCUAUCUCUGAAGAAAAUUAAAUCCUUUUUAUGAAUAGUUGAGUAUUAUUUAAUGGCCGACUUUUAUCAAAUACUUGGUGUUUCAAGAGAUGCUGAUGCUAAUACUUUAAAGAGUGCUUAUAGAAAG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3721584	0.8754181	dnaJ	1726455	molecular chaperone DnaJ
PMM1405	68	75	68	74	2.69	Yfr1	12	19	13	19	5.25	-4.34	-12.28	-0.476662	AUGGGGUU&AACCCCAU	((((((((&))))))))	AAUGUGACUAGCUGACAAAUUAAUAUUUUCGACCUAUUGUUAACAAUUAGUUAAGUAAAAGUAAAGAUUAAGAUUAUGGCAAAAUCAAAAGUGAAGGGGGGAAAAGCUAUUUUAUCUCCAAAAACUCCAACUAUUUUGGCAGAUGGGGUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3928103	0.8909401		1725967
PMM1685	47	53	47	53	1.44	Yfr1	32	38	32	38	0.34	-5.83	-7.61	-0.640309	GAUUUGG&CCAAAUC	(((((((&)))))))	ACAAAACCCAAAAGAUUUUCAGCGGCUUUGGGAAGUUGCUAAAAAAACACUAAUGAGAGAAAAAUUGAAAAAAAAAUGAAAGAUAUGCCAACUUGGAUAGAUGAGUACCACAAAGGCUCAAGAUUUGGACUUAAUGGGAAAGUAUUACUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.204443	0.8751146	speE	1727184	spermidine synthase
PMM1180	3	9	3	9	1.75	Yfr1	32	38	32	38	0.34	-5.59	-7.68	-0.61395	GAUUUGG&CCAAAUC	(((((((&)))))))	ACCAAUUUAGGAUUGAAUUCAUUAGUUCUGCUGAUAGUCUUUUUAAAGUAGAUUUAUGAUUUGUACCUUAAAAGAAUGAUUUGGCCUUUUAGACGUAAGUCAAAAAAAAGAAUGGCUCGUAUAGUAAUUGAUGAGCCAAUAACAAGUUCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2297474	0.8751146	sppA	1726722	signal peptide peptidase SppA (protease IV)
PMM1166	-58	-52	-58	-52	3.33	Yfr1	23	29	23	29	0.92	-5.42	-9.67	-0.595279	UGUGGGG&CCUCACA	(((((((&)))))))	AGACGUUCCUGCUGAGAUGUGGGGGUGGAAUGGAAGAACCUUUGCUUAAUAAUUAUUAUUUUAGGUAUUAAUUAAAUGGAAAUAAAUAAAUUAGUUGAUUUAAACAGUCUUAGAACUGCUCCGCAAUUAAGCAGCAGUCAAGUAAAAAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.248886	0.8751146		1726936
PMM0408	1	7	1	7	2.87	Yfr1	22	28	22	28	1.55	-7.47	-11.89	-0.82043	GUGAGGA&UCCUCAC	(((((((&)))))))	AGAUUGUCGGUAGGUUGUGAAGAUACAAAUGAUUUAAUUUCAGAUAUCUUAUUUGCCUUAAAUAGAUUCUAAAAAGUGAGGAAUUUACUAAAAAAUCCAAUAUGGAGAAGUUUAGAGUUGGGGUAUUCGAUUCCUGAUAAUGAACAUGCU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0819251	0.8607323		1726995	cystathionine gamma-synthase
PMM0494	-36	-28	-34	-28	4.84	Yfr1	22	30	22	28	1.55	-9.16	-15.55	-1.00604	GUGUGAGGA&UCCUCACAC	(((((((((&)))))))))	AGAUUUCUGCUAAAAAUUUACGUUUUAGAAUUUGAUUGAGUGUGAGGAUGUAGGAUAAAUAAAAAUAAUUUUUUGAUGGCAAACCUUAAUCAACCCCCAAGUAGAGUUACCCCAAAUUUAUUGCAUAUUUUAGAUGCUUUUACAGACAAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0253828	0.8607323	ppa	1726044	inorganic pyrophosphatase
PMM1593	-24	-18	-24	-18	3.95	Yfr1	20	26	20	26	1.88	-4.7	-10.53	-0.516201	GGGGAGU&ACUCCUC	(((((((&)))))))	AGCAGUAUUAGGAAAAAUAGUCUUCAAUUAUCUUACAAAGAAAGUUAGGAAGGGGAGUACAGAAACUUAAUAUCUAUGUUUGAAUCAUUAAAAAAUUUUGUGAAGACCAAUAUUGAAGAUUUAGAUGGUAAAGAAUUAGAAAUAUCAAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3408079	0.8751146	pebA	1726360	dihydrobiliverdin:ferredoxin oxidoreductase
PMM1607	-27	-21	-27	-21	4.89	Yfr1	23	29	23	29	0.92	-4.65	-10.46	-0.51071	UGUGAGG&CCUCACA	(((((((&)))))))	AGCAUAUCUUAAUUUUUUUAAUUUCUUUGUAAGACAAUAGUAUUAUAUUGUGAGGUUCUCAAAGACAAUUUUUACAUGUCACACGCAGUUAAGAUUUAUGACACAUGCAUUGGAUGUACCCAAUGUGUAAGGGCAUGCCCACUAGAUGUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.347809	0.8751146	psaC	1726501	photosystem I subunit VII
PMM1193	-63	-43	-61	-55	1.24	Yfr1	36	58	50	56	11.19	-9.03	-21.46	-0.991765	AAAAGCCCGUAAAUCAUCGAU&AUCGCCCGAUUUAUCGGGCUUUU	(((((((((((((((..((((&))))...)))))).)))))))))	AGCUUCCCAGCUAAAAGCCCGUAAAUCAUCGAUAAGAUUUUCAAGAUAAACACCAGAGGGUAAUUUAAUCACUAAAUGAAUAUUAAACAACCAUCUUCUCAUAAAAAUCCAGAACCUGAAAGUAGCGUUUUAUAUAUUGUUGGUACGCCC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0280368	0.8607323		1726173	tetrapyrrole methylase family protein
PMM0384	-48	-42	-48	-42	1.7	Yfr1	22	28	22	28	1.55	-8.55	-11.8	-0.939047	GUGAGGA&UCCUCAC	(((((((&)))))))	AGCUUUAUUCAAAGUAUGAACUAGAUAGUGAGGAAAUAAAUUUUAUUGAAAAGACCAUUAUGAAAAUGGAAUAAUAUGGCUAAAGACUUUUUCUAUAAAAGGUAUGAAGGGAAUCCCAAGAUAUAUGCUUAUUCUGAUUCACAUCCGCAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0399051	0.8607323	spnII-interrupted-C	1726323
PMM0080	-65	-59	-65	-59	1.89	Yfr1	32	38	32	38	0.34	-4.75	-6.98	-0.521693	GAUUUGG&CCAAAUC	(((((((&)))))))	AGGACAACAAGAUUUGGCGGAAUGAAGCAAGAAUGUGGAAUUCAUACUGAAAAUUAAAUUUUUCUUUUAGGGCCUAUGAUUGAUGAUAUUAAUUUCCUUUUAGUUGGCAAUAGCAGGCUUCACUGGGCAGAAAAUUUACAAUCAAAGUAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3338823	0.8751146		1726604
PMM1346	18	34	28	34	5.07	Yfr1	32	51	32	38	11.19	-5.29	-21.55	-0.581001	CGAGCAGGGUGAUUUGG&CCAAAUCGCCCGAUUUAUCG	(((...(((((((((((&)))))))))))......)))	AGUAAGAAAUUGAAAAAAGAUGAUUUCAUAAUAAAAGAAUUUAUAGAUGAUGCUUUUGAUUUGAAAUCACACUUAAUGGAAUUUUUGUCUAUCGAGCAGGGUGAUUUGGAUGGGUUCCUCGAAAACGCAAAGAUGGAUUUAGCCAAUCUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2641976	0.8751146		1726816
PMM1174	21	36	21	27	4.55	Yfr1	22	38	32	38	1.93	-4.93	-11.41	-0.541462	GGUUUGGUUUAAAGGA&UCCUCACACACCAAAUC	((((((((....((((&)))).....))))))))	AGUAUUAAUUUGCCCUAAAACUGCCCGUAAAACAUUUAAAUAAAGCCUAAUAUAAAUCAAAUAACAAAUUAAGUCUUGAAAUCUUCUAAAUGCUGGGUUUGGUUUAAAGGAAGCCUUAAUGAAGGGGGAUAUUGGAAAGAGGGUUUUAGU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3095948	0.8751146		1726905
PMM1030	10	17	11	17	0.3	Yfr1	49	56	49	55	9.5	-4.09	-13.89	-0.449205	AAGCCCGA&UCGGGCUU	((((((((&))))))))	AGUUGUUUAAAAAAGACAUUAAUCGUAUGAUUCGUUAUGAUCAAAAAAGCAGGACAUUAAAAGAUCUUGAAAAUAAUGGUAACCAAGCCCGACAUUACCAAAAGACAAGAGCAACUUCUUGAAGAACUUAAAAAAUGUGAUGAUGAAUUG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.4308989	0.8909401		1726150	ferric uptake regulator family protein
PMM0396	-40	-34	-40	-34	3.63	Yfr1	21	27	21	27	1.88	-4.84	-10.35	-0.531577	UGGGGAG&CUCCUCA	(((((((&)))))))	AUAAAUUUGAAACUAACACAACUCCAGAGCCAGCUUGGGGAGAAUCUAAACUAUCGGCUUACAAUUAACUAAUCUGUGACAAGUAAAAUUGCAGUAAUUGGGUUUGGAAAUAUUGCAAAAGCUAUUAUAACUCCGCUAUUUGAUAAAAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3216106	0.8751146	proC	1725692	Delta 1-pyrroline-5-carboxylate reductase
PMM0668	-30	-23	-30	-24	3.46	Yfr1	31	38	32	38	0.34	-4.94	-8.74	-0.54256	GAUUUGGU&ACCAAAUC	((((((((&))))))))	AUAAUUGGGGGAGAAAAUAGUGAUUGGUCGAUUGAGGAACAUGAGGAUUUGGUUUUUAAAAAUUGAUUUUUAUAUAUGGAUGAUUUAACAAGACUAUUUAUGCAGAAUGAAAGAAUAAUUAAUAACAAGAACAAUGAUUUAAAACUUACA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3082757	0.8751146		1727165	16S ribosomal RNA methyltransferase RsmE
PMM1137	-5	4	-3	4	2.99	Yfr1	29	37	29	35	0.34	-7.17	-10.5	-0.787481	AUUUGGUGU&ACACCAAAU	(((((((((&)))))))))	AUAGCAUGUAAAUGCAUUUGGGUCCUAUUGAUAUAGUUUGGAUUAAUACCUGAACUGAUUUUUGGUUUUUAUUUGGUGUUUAAAUUAUUUAUUGCUAGUUUAGUUUUUUUGAUUUUAUUGCUUUUAGUUUUUGCAUUUAUUUUUAAUCAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.098354	0.8607323		1726937	cytochrome b(C-terminal)/b6/petD
PMM0021	-74	-68	-74	-68	0.17	Yfr1	14	20	14	20	5.25	-6.53	-11.95	-0.71719	UAUGGGG&CCCCAUA	(((((((&)))))))	AUAUGGGGGCUGGAGAUUGUCAUAACUUAUGGUCAAUUUUAAAAAAUAAAAAUACUUUAAAUAAUUAAAUAAUUAAUGAAAAAUAUUACUUUUAAAGAGAAAAUAAACCUUUCUAAUUAUACGACUAUAAAAGUUGGUGGAUUUGCGGAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.141895	0.8751146	murB	1726721	UDP-N-acetylenolpyruvoylglucosamine reductase
PMM1707	36	44	38	44	4.52	Yfr1	20	29	20	26	1.88	-5.26	-11.66	-0.577706	UGGAGGAGU&ACUCCUCACA	(((((((((&))))))).))	AUAUUAGUUUUUAAUAAAAUUUAGAAAGCUGAAAGUAAUUAGGAUUUCAGCUUUCUUUACUGGAGGUAAAUUUUAAUGCAGCAGGUAAAAAAAGUUGUUCUUGCAUAUUCUGGAGGAGUUGAUACUAGUGUCUGCAUUCCAUAUUUAAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2678137	0.8751146	argG	1727295	argininosuccinate synthase
PMM1121	-3	6	-2	5	5.15	Yfr1	23	31	24	30	0.92	-8.64	-14.71	-0.948931	UGUGUGAGG&CCUCACACA	(((((((((&)))))))))	AUCAUAGAAAAAGUAUCGUUUGAUACUUGUGAUUAUACUCAGUUAUACAGUAUCUUAAGGUGUCCCUAAUAUUGUGUGAGGCAAUUUAUGAAGCUUUUCAAAAGCUUGCUUGUGGCACCUGCAACUCUUGGUCUUUUAGCACCAAUGACC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0374112	0.8607323	som	1727082	porin
PMM1151	15	21	15	21	5.96	Yfr1	28	34	28	34	0.23	-5.12	-11.31	-0.56233	UGGUGUG&CACACCA	(((((((&)))))))	AUCUGACGCAAUUAUGUUGAGGUAAAUUUUGUUUAUUCUUUUCUGAUAAUAUAAAUCUAGAAAAUAAAUUAUUUAAUGAUCGAAACAUCUGGUGUGAUAGAAAAAGAGCAAGGAAAUGGUUUUUAUUUGGUUACUUUAGAACAACCUGAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.285094	0.8751146	infA	1727007	translation initiation factor IF-1
PMM1448	62	68	62	68	1.4	Yfr1	21	27	21	27	1.88	-8.28	-11.56	-0.909392	UGAGGAG&CUCCUCA	(((((((&)))))))	AUCUGAUCUACAUAUUAUUAUCGGCGAUGAAGUUGAAGAUAAUCUAUAUAAUAAUCAAUUUGGUAAAUAUCAAAUAUGAACUUAAAAAAGGUUGAUUUUUAUUUAGAUUGGCCAGGAUCAAAAAACAUUAUUCAUUUGAGGAGAUUUAUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0482169	0.8607323		1726048
PMM0388	-68	-61	-68	-62	1.54	Yfr1	31	38	32	38	0.34	-7.08	-8.96	-0.777596	GAUUUGGU&ACCAAAUC	((((((((&))))))))	AUUAGUGGAUUUGGUAUUACAAGUUAUUUUCUUGCUCUUGAGGGAAUAAUUGAAUUUUUAAGUAUUAAUAAUUAAAUGCUAGUAGAUUUUAAAAGGCCCUCUUCUAAUAUUAAAUAUUUAUCCUCAUUAUCCUCAGAAAGUUGGCUAGAG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1037542	0.8607323		1726523	tRNA-(MS[2]IO[6]A)-hydroxylase
PMM1107	2	18	12	18	2.2	Yfr1	19	34	19	25	3.65	-4.63	-10.48	-0.508513	UGGCAAAAUUAGGAGUA&UACUCCUCACACACCA	(((.......(((((((&)))))))......)))	AUUAUAGGAUUGUAAUUUUUUAUUAGCUAGAAUUAGUCGGUUAGUAAAUUGUCUAAAUCAAAGAGUUAUCAAUUUAUGGCAAAAUUAGGAGUAAAUAUAGAUCAUAUUGCAAAUGUCAGGCAGGCUAGGCAGACUGUAGAACCAGAUCCU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3506303	0.8751146	pdxJ	1727142	pyridoxine 5'-phosphate synthase
PMM1526	11	17	11	17	1.91	Yfr1	29	35	29	35	0.32	-7.01	-9.24	-0.769908	UUGGUGU&ACACCAA	(((((((&)))))))	AUUAUUGAAUAUUUUGUUUUUGCUUUUUUUGCAAGAGAAUAUUAAUGUUUAAUAAAUAGUAUCUAGAUUAAUUCCUUGAAUAAUAUUGGUGUAAUUUUAUUUGAUAUAGAUGGUGUUAUACGAAGCGUAGAGAAUAGUUAUAGGCUCUCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1081113	0.8607323	hisB	1726278	imidazoleglycerol-phosphate dehydratase
PMM1466	60	73	65	71	6.95	Yfr1	21	33	23	29	1.94	-6.56	-15.45	-0.720485	GGCUUUGUGGGGAG&CUCCUCACACACC	((...(((((((((&)))))))))..))	AUUUAAAUGUAAUAUGGGAUAAGUUAAGUAUUUAAAUCCCUAAAUAUUAUUUGAAGUUUAACCACAUUUUUUUUGAUGACCAAGAACUUUAGAUUUGAAAAAGAUAGUAUGGGACAGAUAAAAGUUCCUUCAGAGGCUUUGUGGGGAGCC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1395757	0.8751146	fumC	1725618	fumarate hydratase
PMM1678	26	32	26	32	3.02	Yfr1	29	35	29	35	0.32	-5.87	-9.21	-0.644702	UUGGUGU&ACACCAA	(((((((&)))))))	AUUUAGUAUUAUUUUGACAAAAAAAGUCAUCAAAGACGAUUUAUUUUCUUAAAAUUAAAGAAAACUAAUUACAAAAUGGAUGCAUUACUAGUUAAAGAUAUUGGUGUAAAAGCUUUAUUGGUUGGUGGAGCAGUGCUUGUUUCUUUUUGG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2004204	0.8751146		1727342
PMM0296	-67	-58	-67	-61	5.21	Yfr1	27	37	31	37	0.34	-4.7	-10.25	-0.516201	AUUUGGUGGU&ACACACCAAAU	((((((((((&)).))))))))	AUUUUAAUAUUUGGUGGUUUAGCAUUUGCAGCUGCAUGUUUCCUUUCUUUGUACUCUUUGCACUAAAAUAUAUCCAUGAAAAAAUUUGUAACUAGCAUUCCAAACCUUCUCCUAACAUUUACACUUUGCUUUGUUUUAAGUAGUUGUUCU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3408079	0.8751146		1727288	similar to Arabidopsis thaliana photosystem II assembly protein
PMM0446	45	51	45	51	1.75	Yfr1	31	37	31	37	0.34	-4.54	-6.63	-0.498628	AUUUGGU&ACCAAAU	(((((((&)))))))	AUUUUCCAUUAACAAACAAUGCAAAAUUAAAAAAAUUGAAUAUGUUGAAAAUAUAAAUAAGAUUUAUUUCCUCAAUUGUUAAAUAAAAACUUUUAUUUAAUACUUAUAAUUUCCGUUGUAUUUGGUAUAUCUUUUUGGAUCGGAUUUAAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3634704	0.8751146	ctaC	1727092	cytochrome c oxidase subunit 2
PMM1144	-58	-52	-58	-52	4.42	Yfr1	30	36	30	36	0.34	-4	-8.76	-0.43932	UUUGGUG&CACCAAA	(((((((&)))))))	CAAAUACCUCAAUGGUUUUUGGUGAUGCCAAGAAAGUUUUAAGUGAGUUAAUUGGAGAAUUAAAGGAUCUAGGAGUUGGCGAUAAAUAGUAAUCUCUCAUUUAAGUUUUCAGAUUAUAUAAACAAAAGACCUUUUAGACAGGCUUUCCCU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.4449483	0.8909401		1726314	hydrolase of the alpha/beta-hydrolase fold
PMM1021	12	18	12	18	0.63	Yfr1	21	27	21	27	1.88	-8.47	-10.98	-0.93026	UGAGGAG&CUCCUCA	(((((((&)))))))	CAACCAAAAAAAAAUCAUUUAAGUAGUACCAAUACUCAUAAAAUAAAUUAAUAUAGAGUUUGUGAAAAUUUAAUUAUGACUGAUAUUGAGGAGAUAAAAAAGAAGAUAUAUCAAAUUGCAGCUAUUACUGACAGGGGGCAAAGACUGAAC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0422349	0.8607323		1725891	pili assembly chaperone
PMM0992	-42	-33	-39	-33	2.55	Yfr1	20	28	20	26	1.88	-6.01	-10.44	-0.660078	GUCGAGGGGU&ACUCCUCAC	((.(((((((&)))))))))	CAAUUAUUCUUAUUAAAUGAAAUAUAUGAAGAGGUCGAGGGGUUAGAAUAAUCUAAACAAGAUUACAAAAAAAAUAUGGCAAGUCAGGAUUAUCUAAUUGCAAUUGCAUUAAUAGAACAAAAUAAUAUCAGGGCCAUGCCUUUAGGUGGG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1867767	0.8751146		1726644
PMM1069	-35	-21	-27	-21	4.11	Yfr1	19	33	19	25	3.42	-4.67	-12.2	-0.512906	GGCAUGCUAGGAGUA&UACUCCUCACACACC	((..((..(((((((&)))))))..))..))	CAGAAUAGAAUUAAAUCGAAUUGAUUAAUUUAAAAUUAUAGGCAUGCUAGGAGUAAAAAGGAGAAGUUUUUCUAAAUGUCAUUAAAACUAGAUGGUAAAAAAUUAUCCCUAGAAAUAGAAGAAAGAUUAAGAAAUUAUAUUCUUACUAAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3449996	0.8751146	folD	1726781	bifunctional 510-methylene-tetrahydrofolate dehydrogenase/ 510-methylene-tetrahydrofolate cyclohydrolase
PMM0665	-1	6	-1	6	2.04	Yfr1	14	20	14	20	5.25	-4.34	-11.63	-0.476662	UAUGGGG&CCCCAUA	(((((((&)))))))	CAUUAUUCGAGGGGAUACCGUCUAAAAUAUUAGUUCUUGAACAAGGAAAGAUUAAAGAAUUAAUGAAAAAAAAUUAUGGGGGAUAAAAUUGUACGCGCAACUGCGGCUAAUGGUGGAAUAAGGUUAGUUGCGGUAUUAACAACAGAUUCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3928103	0.8909401	hslO	1726016	heat shock protein 33
PMM1332	57	75	69	75	8.68	Yfr1	21	37	21	27	2.28	-5.83	-16.79	-0.640309	AUUUGGAAUUGUUGAGGAG&CUCCUCACACACCAAAU	((((((...((((((((((&))))))).)))))))))	CAUUUAAUAAAGAAACUAGAAAUAGAUGGUCAACUACUUUUACAAACAAUUAAAAUUAAUUAAAUCUUUAUCAAAAUGCAAUUUUCAACUUUCCAACAAGAUCUUAAUACUUGGCAAGGUUCUUCAUUAAUAUUUGGAAUUGUUGAGGAG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.204443	0.8751146		1726836	leucyl aminopeptidase
PMM0484	-13	-7	-13	-7	2.32	Yfr1	31	37	31	37	0.34	-4.22	-6.88	-0.463483	AUUUGGU&ACCAAAU	(((((((&)))))))	CAUUUUGUUUAAUUUCAAAAUAAUUUAAGAUUUAAAAUUAUUUGCUAUCUUAAUUUUACAUAAUUUGGUAAAAAAUUGUUAAUAGCAACUUGGAAUGUAAACUCUGUAAGAACAAGGCUUUCUCAAAUUAUUAAUUGGAUUAAAGAGGUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.4109104	0.8909401	xthA	1726771	exodeoxyribonuclease III
PMM1604	-72	-66	-72	-66	3.57	Yfr1	21	27	21	27	1.88	-6.15	-11.6	-0.675455	UGAGGAG&CUCCUCA	(((((((&)))))))	CCUUGAGGAGAUGUUAUUAAGCCAACAAUUAACCACUCAUUAUGAUUUAUCAUAGUUUAUAUGUAAUUUAUUUCUAUGGAAUUUUCGAAUAAACCAAUACUCCCCGGUUCUAUAGUAGUUGUUAAAGAUGUUAAUUCUAUUUAUAGAGGU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1738046	0.8751146		1725848
PMM0712	-72	-65	-72	-66	1.65	Yfr1	12	19	13	19	5.25	-5.54	-12.44	-0.608458	AUGGGGUU&AACCCCAU	((((((((&))))))))	CGAAUGGGGUUACAGCUGCAGGCUUGCAGAUCUUACUGAAUAUGUAAUCAAAAAAGAGAUUUAAUUUAUGUCUUUAUGAAGUUAUCUAAUAUUCAACAAUAUAGUGUUGUAACAGCAAACUAUUGGGCGUUCACGCUUACUGACGGCGCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2352719	0.8751146		1726305	major facilitator superfamily multidrug-efflux transporter
PMM0913	-47	-41	-47	-41	1.97	Yfr1	14	20	14	20	5.25	-4.18	-11.4	-0.459089	UAUGGGG&CCCCAUA	(((((((&)))))))	CGUUACAACUCAAUGAAGGGGUUGUUUAUAUGGGGCAGAUAGAAGACGAUGAGGAUGCACUAGAUAAAUAUAAGUAUGUCUAGGAAUAUAUCUCUUAAAGAAGCCUUUAAUAUGGCUGGUAAAACUUUAGUUUCAAACAAAUUAAGAAGU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.4170203	0.8909401		1726817	ABC transporter
PMM0483	68	74	68	74	2.68	Yfr1	20	26	20	26	1.88	-4.77	-9.33	-0.523889	GAGGGGU&ACUCCUC	(((((((&)))))))	CUAAUUGACAAAAUUUUUACUUAUUUAUAAGUUAGAACAUCAUGAGAUUUUCUCAAAACUACACUCAUUUAAAUUUUGACUGACAUAUUAAAAACUACUUAUUCUGAAGAAGUAUUCUCUUCAGCUUUAGAACUAAUGCCAGGAGGGGUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3311335	0.8751146	hemL	1726761	glutamate-1-semialdehyde aminotransferase
PMM0843	35	43	37	43	7.01	Yfr1	30	38	30	36	0.34	-4.56	-11.91	-0.500825	GAUUUGGUG&CACCAAAUC	(((((((((&)))))))))	CUCUUGAAAGUGAUGAUUUUCAACCAUCAAUUAGAUAAUCUGAUCUUAACAAAGAGCUAAAGUUAUAAGAUUCAAAUGGUAUCUGCGAGUAUUAAAUCUUCCGAAAUUAGAUUUGGUGAAUGUAAUAAAAAACUUCUUGAAGAAGUCAUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3605969	0.8751146	tldD	1727285	modulator of DNA gyrase TldD
PMM0709	-14	-7	-14	-8	3.69	Yfr1	25	32	26	32	0.54	-7.79	-12.02	-0.855576	GUGUGUGA&UCACACAC	((((((((&))))))))	CUUGUAAAUUUCUUAACCUUACAAAGUUAUAAAAAGUUUGGAUUAACAUCCAUUUUUAAAAGUGUGUGACUUUACAUGAAAUUAUUUCAAAAAUUAAUUGCAGUUCCUGCAGUUAUAUCUAUGAGUACUGGUUUUGCAGUUAACGCUGCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0668803	0.8607323	som	1726265	porin
PMM1083	42	51	42	48	1.5	Yfr1	28	38	32	38	0.34	-7.24	-9.08	-0.795169	GAUUUGGUUG&CACACCAAAUC	((((((((((&)).))))))))	GAAAUACUCAUAAAGUAUUAUUGGCACAUAUAGAAUAUGUUGAAGACAAAUUCUUCUUUAAUAUCUUAAAUGUAAAUGGCAACUUCUUAUUCAAAAUAUUCACCUAAAGGAGAUAUGAUUUGGUUGAUCCUUAGACCAUGGAUAUUACUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0943077	0.8607323		1726933	kinase
PMM0792	57	63	57	63	4.68	Yfr1	21	27	21	27	1.88	-4.64	-11.2	-0.509611	UGAGGAG&CUCCUCA	(((((((&)))))))	GAAAUCUUAAAGGUUAAUCCCGCAGGCAAUUCUGAUGAAAAAACACCUAUAGUAUUAAUAAGGAAUAAUAUAUAAAUGAAACAAGAUUCAAAUCAUAUUUUGAAUUCUAAUAAAGAUAGAAAAGUUACCUUUGAGGAGCUUCAUAUUCGU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3492182	0.8751146		1726832
PMM1647	17	23	17	23	1.9	Yfr1	14	20	14	20	5.25	-4.25	-11.4	-0.466778	UAUGGGG&CCCCAUA	(((((((&)))))))	GAUCUUUUAUCAUUAAAAUUUAAUUUACUUUAUCUUAAAGAAAGCAUAAUUAUAAUAAGAUUCUUUUUUGCAGAUAUGCCAAUACAAAUAAUAUGGGGAAAUGAUUUAAAUGCAAGUAAUAAGUUUAUAAAACAAAUAAUUGAUGAAAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.4063526	0.8909401		1726055	DNA polymerase III subunit delta
PMM1335	-75	-69	-75	-69	0.25	Yfr1	32	38	32	38	0.34	-7.58	-8.17	-0.832511	GAUUUGG&CCAAAUC	(((((((&)))))))	GAUUUGGGAAGGUAAAAGGUGAAGCUCAUGUUGAUGGGAAGUUGGUUUGCUCAGGCGAAUUAAUGUUUUCAUUAGUUGAUUAAAAACAUGGAGAUUAAAAAUACUAAUUUUAAAGGUGCAAUAGUUCAUCCAAAUGCAUUGGUUGAUUCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0764774	0.8607323	lpxA	1726818	UDP-N-acetylglucosamine acyltransferase
PMM0833	48	55	49	55	3.96	Yfr1	22	29	22	28	1.55	-6.17	-11.68	-0.677651	UGUGGGGA&UCCUCACA	((((((((&))))))))	GGCGUUUUGCAGGCAAUAAGAAAAAUAGGUAAAUUUAAUUCGUUAAUUUAUGGACUUGAAAAAUUAAUAUUCUAAAUGCUUAUACCAAUAAAACAAAAUCAAAUAUCUAAACUUAUCCCUUCUGUGGGGACAGGUGGUCAGUUUAAAUAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1720057	0.8751146		1727263
PMM0224	54	72	66	72	5.24	Yfr1	12	29	12	18	9.2	-6.64	-21.08	-0.729271	UGGAGGGGCUGUUGGGGUU&AACCCCAUACUCCUCACA	((((((((....(((((((&)))))))..)))))).))	GGGCUUUUUUUUUAUGUUUAAUUCUCAAUUGAGUUCUUAUAAUAGUUAAUAGAACUUUAAUAAUUUGAUAUUUCAAUGGGUAGCAGUUUUGGUAAAAAUUUUCGUGUAACUACUUUUGGAGAAUCUCAUGGAGGGGCUGUUGGGGUUAUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.13353	0.8751146	aroC	1726421	chorismate synthase
PMM1096	-75	-69	-75	-69	2.62	Yfr1	20	26	20	26	1.88	-6.25	-10.75	-0.686438	GGGGAGU&ACUCCUC	(((((((&)))))))	GGGGAGUGAACUUGAAUAUGUAGAUGAAGUUACUUUAGCAAGAGCCUUAGAAGGAAGAACAAAUUUAAUUUAAAAAUGAAAAAUAAAAAUCAGAUGAAAGUAGAAAAAAUUUUAAGGCUUCCUUCUUGGAUAAAGUUUCCUAUUAGCAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1649446	0.8751146	lipA,lip	1727018	lipoyl synthase
PMM0702	60	66	60	66	4.17	Yfr1	21	27	21	27	1.88	-5.66	-11.71	-0.621638	UGAGGAG&CUCCUCA	(((((((&)))))))	GUAAAAUUUUGACUUAAAUUUUUUCUUACUAAGAUCUAUAAUAUUAAGUGAAUUUAUAUAGUUGAUAAGAAGUUCAUGAAUAGAAAGUCAAAUAAUUCUAAUCCAACUGGAAAUCUAGAUUAUGACAAGAUUCUUGAGGAGGAAAUAAUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2221596	0.8751146		1726540
PMM0387	-68	-62	-68	-62	3.49	Yfr1	25	31	25	31	0.54	-5.21	-9.24	-0.572214	UGUGUGA&UCACACA	(((((((&)))))))	GUCACUUUGUGUGAAAAUGUUUUGGUUUUUUUGUUUCUUUCUAGAUAGCAUUUAAAAGAAAAGACUUAAUUGCUGAUGAAUAUUUUAUUGAUAAAUGGGCCAAACCUUAAUUUGUUGGGUACUAGAGAACCUGAAAUAUAUGGAAAUAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2739089	0.8751146	aroD	1726511	3-dehydroquinate dehydratase
PMM1120	-75	-69	-75	-69	3.56	Yfr1	22	28	22	28	1.55	-7.05	-12.16	-0.774302	GUGAGGA&UCCUCAC	(((((((&)))))))	GUGAGGAAAUUCUCAAGUUAGUGAAUUUUAUUUUUCAUAAUUUCAGUUACUAUAAUUAUUAGAAAACAAAAUAUAUUGAAAAAAAUUGACUUAUUAAAAAAAAUUGAAGAAGCAAAAAUAAAACAAAAAGCAGGAAAUUCUUUAGAGGCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1056045	0.8607323		1726966	TPR repeat-containing sulfotransferase
PMM1561	35	42	35	41	2.45	Yfr1	12	19	13	19	5.25	-4.72	-12.42	-0.518398	AUGGGGUU&AACCCCAU	((((((((&))))))))	GUGGUAAGGCAUCGGGUUUUGGUCUCGACAUUCCUAGGUUCGAAUCCUAGCGGCCCAGUUCUAAAAAUUAGUUGAGUGAGCUCUCAUAAAUUAUUUCUAUUUGAUUUUGAUGGGGUUAUUGUAGAUGGAAUGAAUGAGUACUGGCACAGU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3380285	0.8751146		1726336
PMM1518	58	65	59	65	4.45	Yfr1	30	37	30	36	0.34	-4.51	-9.3	-0.495333	AUUUGGUG&CACCAAAU	((((((((&))))))))	GUUAGAGCAAAUUCCGUCUAAAAUAUCAUUUAAGGCUAAACCCAUUUCUUCUCGUAAAUAAUAAAAAGACAUUUUAUGAAAGAACAUAUAGACCCUACCUCACUAUUUAAGCAAACUAAUUUUUCAAACACUAUUUGGUGGAAAGUAAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3678018	0.8751146		1725898
PMM0835	-64	-58	-64	-58	1.72	Yfr1	21	27	21	27	1.88	-7.8	-11.4	-0.856674	UGAGGAG&CUCCUCA	(((((((&)))))))	GUUUAUUUUUAUGAGGAGAAUCAUAUUAAAUCAUAUGACUAAGUCUUUAAUCUAUUCUUCAAUUAAAUAAUUUCUAUGGAUAAUAAUUCAAAUAGAAAAAUAAUAUUAUUUCUUAUGGAUGAAAUUGGAUUAAACGAGUCUUCGAUUGAG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0664486	0.8607323		1727267
PMM0670	51	61	55	61	1.7	Yfr1	21	31	21	27	1.88	-7.28	-10.86	-0.799562	UGGAUGGGGGG&CUCCUCACACA	((..(((((((&)))))))..))	UAAAAUCAAAAUUAAUUUAACUUGAUUAGUAAUAAAAAUCUUCUCAAAUCAAGUGAAAUAAUUUAAAGGAAUCUUGUGCCUGUUUUACCAAAACAAUUGGUUGUAAUCGGAGAUAGUUCAGUAUAUGGAUGGGGGGAUACUGUAGGAGGA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0920548	0.8607323		1727132	possible role in phosphonate metabolism
PMM1443	61	75	69	75	1.19	Yfr1	19	31	19	25	3.39	-5.46	-10.04	-0.599672	UGUUGUUCAGGAGUA&UACUCCUCACACA	(((.((..(((((((&))))))).)))))	UAAAAUUUUGGAUUGGCGAAUUUUAUAAAAAAAUGGAAGAAUGAAUUAGAAGAUAUUUAAAAACUAAUCUUUUUAAUGGAACCAAAUGUCUACAUUCUAAUUUUACUUAUAAUUAUAAUUUUAGUAGGUUCAGCAUGUUGUUCAGGAGUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2442923	0.8751146		1725821
PMM0303	-70	-64	-70	-64	3.51	Yfr1	30	36	30	36	0.34	-4.75	-8.6	-0.521693	UUUGGUG&CACCAAA	(((((((&)))))))	UAAAGUUUGGUGAUAAAGGGAGCAAAAUUUUAGACCCAAGAUUAGCUCCAAUAAGAGCAAUAAACUGAAAUUUGCAUGAAUGAUAUUUCUGCUUAUAUAAAUUCAGCAAUAUUAAAAAUUCCUUUUAAUUUAUUUAAUAUAAUUUCUCAG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3338823	0.8751146		1725650	tRNA nucleotidyltransferase/poly(A) polymerase
PMM1627	27	33	27	33	2.88	Yfr1	21	27	21	27	1.88	-6.26	-11.02	-0.687536	UGGGGAG&CUCCUCA	(((((((&)))))))	UAAUUAAACUUUAAUUCAAAAAAAAAAAAAUCGUUUUCGAUUAAUUAUUCUUAGUUUAGAAAAAAUUUUUAGUCUAUGAAAAAAACAAAAGUUAUUUGUAUUGGGGAGGCUUUAAUAGAUAGAAUCAAGAAUAAAUCAAAUCAAGAAUUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.164077	0.8751146		1726533	carbohydrate kinase
PMM0797	45	54	45	51	2.64	Yfr1	27	36	30	36	0.34	-6.32	-9.3	-0.694126	UUUGGUGAGU&ACACACCAAA	(((((((.((&)).)))))))	UAAUUACUUCUUAGUAGUACUAUUCAUUAUGUAGUUCUAACUUAGGUUACUACUUUAGUUUAGUAUUUUUUGAAUAUGAAAAUUCUUGUAAUGGGUGGAACAAGAUUUGUUGGCAAGUCUUUGGUGAGUAAAUUGCUAAAUCAAAAUCAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1589414	0.8751146		1727059	mRNA binding protein
PMM0464	64	70	64	70	1.24	Yfr1	20	26	20	26	1.88	-8.22	-11.34	-0.902803	GAGGAGU&ACUCCUC	(((((((&)))))))	UACUAAUAAUCAAAAUUACGCUUUUUAUAAAAAAACAAAUGUUUAUCUAUUUCAAACUAUAAAAUAAGCUCAAUAAUGAAGAGGAAAGAAGAUAGUAAGAAUAAUAAUUAUGAUUCGAUGAGUUUUACUGAUCAUUUAGAGGAGUUAAGG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0502434	0.8607323		1725955	Tat family protein secretion protein
PMM1634	5	11	5	11	1.13	Yfr1	22	28	22	28	1.55	-9.17	-11.85	-1.00714	GUGAGGA&UCCUCAC	(((((((&)))))))	UAUCCCGAUGGUAAAUUUAAUGAAACACCUUUUAAAAAUAACAUUUUAAAAGUUUUAUUUUAUUUUUUAUAUUAAAUGAGUGAGGAAAAAAGAUCUAAUAAAAUCUCCAAUGACUAUGGUGCUGAUCAGAUACAGGUUUUAGAGGGAUUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0251876	0.8607323	gyrB	1725995	DNA gyrase subunit B
PMM0657	-57	-49	-55	-49	4.15	Yfr1	29	37	29	35	0.34	-5.79	-10.28	-0.635916	AUUUGGUGU&ACACCAAAU	(((((((((&)))))))))	UAUCCUUUUUGUUGGCGUAUUUGGUGUCAUUAAAUACUAUAAGUAAUGAUUGAUUAUUUUUUUGAAUAAAUAAUAAUGUGGGAAUUAGAAAAGAUUGCAAAAGUUUUAAAAUAUAGAAUGUUGAAAUCAGAAGAAGGAUUAGAUAAUAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2085211	0.8751146		1726222	vanadium/alternative nitrogenase delt
PMM1319	52	58	52	58	1.76	Yfr1	32	38	32	38	0.34	-5.6	-7.7	-0.615048	GAUUUGG&CCAAAUC	(((((((&)))))))	UAUGUGAAUAAAAAUUGUUAAUUCUUGAGAAAAAUUUUAAAUUUAGAAUAUUAUUAAUUUGUUAUAAAGGUUGAAAUGGUAAAAGGUUUUUCUGAAAGUGAAGUUAAAAAUGAUAAACCUAUUAAGGAUUUGGAAAAAGAGAAAAAAGGG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.228653	0.8751146		1727011	beta-lactamase
PMM1430	68	74	68	74	4.19	Yfr1	29	35	29	35	0.32	-4.71	-9.22	-0.517299	UUGGUGU&ACACCAA	(((((((&)))))))	UAUUAAACCAGUUCAAAGAUCAAUUAUUGAAUUAAGCGAUGAACAAGAUCAACCAGAUUUACUUCCAGGUUAGCUUUGUCAUUUGAAGAAAAUAAUUGGAGAUUAAUUAAAGAUACUAAAAAAGGUAAAUUUUGUUUUUUGAUUGGUGUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3394167	0.8751146		1725815
PMM0389	68	74	68	74	4.35	Yfr1	29	35	29	35	0.32	-4.36	-9.03	-0.478859	UUGGUGU&ACACCAA	(((((((&)))))))	UAUUGAAUCGGAGAUCUUAUCCCAAACGUUUGCUUUGCCAAGAAUUCAUAGUUAAUUGAAUUUUGUUAUUAAUUUAUGGGAAUUAGAAAUACUCUAAAAAAUCUGCUUGGUUUUAAAAGUGAUCUUGCAUCAUUAACAGUAGUUGGUGUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3898285	0.8909401	cobI/cbiL	1726325	precorrin-2 C20-methyltransferase
PMM0876	-43	-36	-43	-37	3.25	Yfr1	20	27	21	27	1.88	-5.23	-10.36	-0.574411	UGGGGGGU&ACUCCUCA	((((((((&))))))))	UCAUACAUUUCUUAAAAAAGGGUUGACGAAUAUGGGGGGUAAAGAGGUAAUAAUUUUAAUAAGGUUUUUUUCAUUAUGGAUUGGGACUUCACUGAAAACAUAGCAUUUAAAUCCCUAAUUGAAGCUUUUAAAGAAUGUGAUGAAACAUCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2714606	0.8751146		1727209
PMM0937	-35	-28	-35	-29	2.53	Yfr1	20	27	21	27	1.88	-6.88	-11.29	-0.75563	UGGGGAGU&ACUCCUCA	((((((((&))))))))	UCCAGACUUCAGUUUUAGAAAUCAUAUUGAUAUACAAAUUUGGGGAGUUGUAAUCUAUUCAAUACAUAGUUACUUAUGAAAAGUAAAAGCUCAAAUACUGAAGCAAUAGCUCUUAUAGAUGCCAAUAAUUUCUACGCAUCGUGCGAACAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1165771	0.8751146	umuC	1725934	UmuC protein
PMM0951	69	75	69	75	1.53	Yfr1	31	37	31	37	0.34	-4.03	-5.9	-0.442615	AUUUGGU&ACCAAAU	(((((((&)))))))	UCUAUGAGUAAAGCAGAGCCUUGGAAUAAAUUUUUACUUUUGAAAAACUACCUUGAAUCAUAAUAAAUUUAAUUAAUGAAUCAUCUUUUUAAGAAAAAUGCAAAACUUGUUUUGAGUAAUGGGAUUACUUUUACUGGUUAUUCAUUUGGU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.4402471	0.8909401	carA	1726175	carbamoyl phosphate synthase small subunit
PMM0503	-73	-67	-73	-67	2.87	Yfr1	21	27	21	27	1.88	-6.83	-11.58	-0.750139	UGAGGAG&CUCCUCA	(((((((&)))))))	UCUGAGGAGCGCUAUUUAUUACGGCUUGAAUUAAACAAUGAUUCAUUAACUUUCUAUUUAAUUACAAAUAUCUUGAUGCACAAUUCAGAAAAUUGCCACGAAAAUGUUUGGAUCCUUUCAGGAACUUCAGAUGGACCAGUCAUAGUUAAC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1199653	0.8751146		1726491	precorrin-6x reductase
PMM0648	50	56	50	56	3.36	Yfr1	20	26	20	26	1.88	-6.12	-11.36	-0.67216	GAGGAGU&ACUCCUC	(((((((&)))))))	UCUUAAGUUGAAAACAAGAAAUAUAUAUUUAACUGAAUGCUAUAUUUGUUGAUAUGAAAAAUAUAAAAGUAGAUUUUGGAUAUAAAUCCUUUUGAUGCAAUCGUAGUAGGUUCAGGAGCAACAGGAGGAGUAGCUGCACUUACUUUGGCC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1765282	0.8751146		1727078	glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
PMM1264	38	44	38	44	3.16	Yfr1	32	38	32	38	0.34	-4.16	-7.66	-0.456893	GAUUUGG&CCAAAUC	(((((((&)))))))	UCUUACCCAAAAAAAAUCAUACAGGUACGGAACUCGUUCUUUUAGUUUAUAAUAAACCCACAAUUGAUAUUAAUCAUGCCAAUAAGACAAGACGAUAAUCAGCCUAAUAGAAGAUUUGGAAUAGUAAAUAUCAUUUUAAUUGGACUCGGA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.420089	0.8909401	ftsH3	1726562	cell division protein FtsH3
PMM1605	-52	-46	-52	-46	2.67	Yfr1	20	26	20	26	1.88	-4.62	-9.17	-0.507415	GGGGAGU&ACUCCUC	(((((((&)))))))	UCUUUAACAACUACUAUAGAACCGGGGAGUAUUGGUUUAUUCGAAAAUUCCAUAGAAAUAAAUUACAUAUAAACUAUGAUAAAUCAUAAUGAGUGGUUAAUUGUUGGCUUAAUAACAUCUCCUCAAGGCAUUAAUGGAAAAAUCAAGAUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3520454	0.8751146	rimM	1726286	16S rRNA-processing protein RimM
PMM0137	-62	-51	-62	-56	2.02	Yfr1	24	36	30	36	1.25	-7.35	-10.62	-0.807251	UUUGGUGCUGGG&CUCACACACCAAA	(((((((.((((&))))..)))))))	UGCCACAAGUGGUUUUGGUGCUGGGUUAAGUUGGGGUGCAGCCCUUAUUCGAUGGGGUUAAAUAAAAGUUUUAUUAUGACAGUCGCAUGGGUAUUCCCUGGUCAGGGUUCACAAAAAAUUGGUAUGGCAAAUAAAGUUAUAGAUUUGCCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0882142	0.8607323	fabD	1725651	malonyl CoA-ACP transacylase
PMM0687	62	68	62	68	2.54	Yfr1	29	35	29	35	0.32	-6.35	-9.21	-0.697421	UUGGUGU&ACACCAA	(((((((&)))))))	UGGAGAGUAAAAAUUCCAACAUAAAUAAGUGAUUCAAAGUUGAUCAAGAAAAGGAGUAAUUAGCUCCCUUUUUUUUUGGAAACUAUUUCUAGAUGUAUUACUAAAUACAUUAAAAGAUUUUAUUUAGAAAUUAUUAUUGGUGUAUUAAUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1564181	0.8751146		1727091
PMM1119	-3	7	1	7	4.08	Yfr1	22	31	22	28	1.55	-11.27	-16.9	-1.23778	UGUGUGAGGA&UCCUCACACA	((((((((((&))))))))))	UGGCCAGCUCGUUUUUUGUCUACUGGUGGUUGUUAAUUCUAGGCAAAUAGAUUAUUUUUAAAUUACUCAAAUUGUGUGAGGAUUUUUAUGAAGCUUUUUAAAAGCUUGUUGGUAGCUCCAGCAACGAUUGGGCUACUAGCUCCAUUUUCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0038187	0.7904709	som	1726740	porin
PMM0229	-75	-67	-73	-67	2.33	Yfr1	22	31	22	28	1.55	-7.62	-11.5	-0.836905	UGGUGAGGA&UCCUCACACA	(((((((((&))))))).))	UGGUGAGGACUUUUGAAACUAAAAGGUAUAAAUUAAUAUCCGAUUACAUUCAUCUUAUUGAAGAGGAACAAUUGGAUGAACGUUAAAUCUAAAGAAUUAAAAGUUAAGGUUCUUUUAUUAAUUACUGGAAGUAUUGCUGCAGUAAGGAUC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0745694	0.8607323	dfp	1727066	p-pantothenate cysteine ligase and p-pantothenenoylcysteine decarboxylase
PMM1613	59	65	59	65	3.28	Yfr1	21	27	21	27	1.88	-6.69	-11.85	-0.734763	UGAGGAG&CUCCUCA	(((((((&)))))))	UGGUUAAUAAACGUUCGCAGAUGGCCUCAAAAACCAACGAAAGAUUUGAUGAAAUUUAUAGCUCUGAAAUAAUAAAUGGAAAGAGAUAAAUUGUUAAAAAAAAUUGAUUCAAUCAAGGAUGAACUUAUUAAUAUGAGGAGGCACAUUCAU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1298531	0.8751146		1726505	zinc metallopeptidase
PMM0120	28	40	34	40	7.1	Yfr1	22	33	22	28	1.59	-5.7	-14.39	-0.626031	GGUUUUGUGGGGA&UCCUCACACACC	(((..((((((((&)))))))).)))	UUAAAUUGAUUACACCAUAAUAAUUACAAUUGAUACAAAAUUUAAAUAGUCUAGAUUUAUUACAUAAUUAAAAAUAUGCGUCUGCUACUCCUUGGAUGUACGGGUUUUGUGGGGAAAGAGUUAGUCCCAGCUUUACUCAAAGAAGGCCAC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2179004	0.8751146		1726347	cell division inhibitor
PMM0135	52	58	52	58	1.81	Yfr1	31	37	31	37	0.34	-4.27	-6.42	-0.468974	AUUUGGU&ACCAAAU	(((((((&)))))))	UUAAUUCUUACAGCAAGAGGUACAGGAUAUCUGUUUCAAAGGAUAGUUGAUAUAUCUCCAUUUGACGGUAAAUAGAUGGAAAAAGAUUCUUCUAUUAAAAAGUCUAGAGCUAUAAGAAGAUUAGUUAUUUGGUAUAAAAGAAAUUCUGCU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.403326	0.8909401	plsX	1726261	glycerol-3-phosphate acyltransferase PlsX
PMM1480	-65	-49	-65	-59	5.66	Yfr1	21	38	32	38	2.28	-4.76	-12.7	-0.522791	GAUUUGGCUACCUGGAG&CUCCUCACACACCAAAUC	(((((((......((((&)))).......)))))))	UUAGUGCAAGGAUUUGGCUACCUGGAGAUAUGAUGUCACCUGCUCCGAUUAAUUAAUCUUUAUUAUUAUUUGAUAAUGACUAAAAGAAAGGAUAUACAAAAUGAAAGUUUGGCAGAAAUAGCAAUAGAUCCAGAUGUUUUAGCUAAAGAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3325064	0.8751146		1725972
PMM1423	36	42	36	42	1.62	Yfr1	31	37	31	37	0.34	-4.08	-6.04	-0.448106	AUUUGGU&ACCAAAU	(((((((&)))))))	UUAUCAAAAAGCUAAGAAUAGUUAAGCAGGCAAAUCCAUCUAGUAUUUGUGACUCUGUUCUUAAAAGUUAAAAAAAUGCAAUUAAAGUCUUUUACACCAUUGGUUGCAGUAUUUGGUACUUCAUUUCUUAUAACUAUUACUUUGAUUAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.4324518	0.8909401		1726752
PMM1454	19	25	19	25	2.68	Yfr1	30	36	30	36	0.34	-5.35	-8.37	-0.587591	UUUGGUG&CACCAAA	(((((((&)))))))	UUCCUAAAAGUUAAUGUUGCUUUUAAUUCUUAUUAGCAAUAUUUAAAAAUAAUUUUUUAAUUUCAACUGAAAGAUAUGUUGGCCUUUGAUUUUUUUGGUGCUACUGAAGGUGGUUUAUUUGAUAUAAAUGCCACUUUGCCUCUCAUGGCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2570582	0.8751146	atpG	1725865	ATP synthase F0F1 subunit B'
PMM1091	59	66	59	65	0.8	Yfr1	31	38	32	38	0.34	-7.76	-8.9	-0.852281	GAUUUGGU&ACCAAAUC	((((((((&))))))))	UUCUAAAAUAUGAUGUCCUUCCUGAUCGCUUUAUCAAACAAAGUUAGGUACAUUUAAUAUAAUUUAAAUUUCGAUGUGAAUUUUUGGGGGUUUAUAAACUUAAAAUUUUUACUAGAUGUACUAUUUGCUCUAGGAUUUGGUCUUUUAUUA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0681888	0.8607323		1726919
PMM0285	-70	-64	-70	-64	4.05	Yfr1	22	28	22	28	1.55	-5.21	-10.81	-0.572214	GUGGGGA&UCCUCAC	(((((((&)))))))	UUCUAGUGGGGAUGAAAUUCUUGACGCAAAAACCGUUACGGCUUGGUUUAGAGCUAAACAAUUGUUAGAUAAAUUAUGAAUAAACCUAGAAUACUUUUUUGGCAUAGAAAGGAUUUAAGAAUAUUUGAUAAUCAAGCUUUAAUCAAAGCA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2739089	0.8751146	phr	1727219	DNA photolyase
PMM0693	-39	-31	-37	-31	3.95	Yfr1	29	37	29	35	0.34	-6.63	-10.92	-0.728173	AUUUGGUGU&ACACCAAAU	(((((((((&)))))))))	UUCUGAAGCCCUAAAAAAAAAUUUAAUUCCGAAUUCAUUUGGUGUAAUGGAAAGGAUUUUAGUUAUAAUUUGAAAAUGUCAGAAAGUAAAAGUCCAUUAGACAGAAUUUAUAGAUUAAUAGCAUCGCAUGCUUGGAUGACUGAGAACGAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.1342748	0.8751146		1726684
PMM1538	29	35	29	35	1.17	Yfr1	25	31	25	31	0.54	-7.18	-8.89	-0.788579	UGUGUGA&UCACACA	(((((((&)))))))	UUCUGCUGAUAUAAAACAAAAAAUGGCUUGUCGAUGAUGUACAAUAUGGAAUUAACAUUUUAAUGAGAAAACCUUAUGAAGGUUAGAGCCUCAGUAAAAAAAAUGUGUGACAAAUGUCGUGUUAUUCGUAGACAUGGCAGGGUAAUGGUU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.0977678	0.8607323	rpmJ	1725644	50S ribosomal protein L36
PMM0131	37	43	37	43	3.64	Yfr1	23	29	23	29	0.92	-5.11	-9.67	-0.561231	UGUGGGG&CCUCACA	(((((((&)))))))	UUUAAUAAAGUCUAUAACAUUUAUUACUAUAGUAAUUAAUACAAGCAAGUAUUACUAUGCUUUCAUCGCAAAAAUAUGAAUAGUAUUCAAUUAAAUAUUACCGGUAUGAAAUGUGGGGGUUGUGUUAACACGGUAGAAAAUAUAUUAAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2863537	0.8751146		1727221	P-type ATPase transporter for copper
PMM1216	37	43	37	43	2.02	Yfr1	32	38	32	38	0.34	-4.53	-6.89	-0.49753	GGUUUGG&CCAAAUC	(((((((&)))))))	UUUCUCCAGCUUUUACAUCAAGUUUCUCACUGGCAGAUUUAAUAAUUAAUUCUUCAAAAUUAAAUAAAGAAUAAUAUGGACAAAAAGUUAAAAGUUUUAUUAUUAGCGGCAGGUUUGGGAACAAGAUUAAAACCAUUAACAAAUAAUGUC	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3649114	0.8751146		1726669	sugar-phosphate nucleotidyl transferase
PMM1485	49	58	49	55	3.89	Yfr1	28	38	32	38	0.34	-4.87	-9.1	-0.534872	GAUUUGGUUG&CACACCAAAUC	((((((((((&)).))))))))	UUUUGAUUAUUUUUCUAAAAGUUAAGUCAAAUUUAUGGUAAUUAGCAAAUCUUACAUAAUGGCGGGUUUUCUUGGAUGAGCAGUAGCGCUUUACAGAUAGCUAAAACAGCAACUUAUCUACCAGAUUUGGUUGAAGUACAAAGGGCAAGU	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.3175766	0.8751146	rpoB	1726754	DNA-directed RNA polymerase subunit beta
PMM0933	32	38	32	38	2.03	Yfr1	32	38	32	38	0.34	-5.33	-7.7	-0.585394	GAUUUGG&CCAAAUC	(((((((&)))))))	UUUUUUGAUAAGCCCAUACUAUUUAGUAAAGAUAUAAGAUGUACAUUUAAUUUAAACAUAUUAUUUCUAUUUUGGAUGAAUUUUAAGAACCAUCAUCAAAAAAAAAGAUUUGGACAACAUUGGUUGGUUAAUAAUCUGAUAUUAGAGAAA	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2594242	0.8751146	ksgA	1725616	dimethyladenosine transferase
PMM1592	-72	-66	-72	-66	2.5	Yfr1	30	36	30	36	0.34	-5.87	-8.71	-0.644702	UUUGGUG&CACCAAA	(((((((&)))))))	UUUUUUGGUGAAACCUGGACUGAAAAUUUUAUUAAUAAUUUUCUUUUUACUUUAAAUCAUAAUCCUCUAAAAUAAAUGUUAAUUCAAAAUACUAUUUUUUAUAGCCAAGAAUGGCGAUGGGCUAAAUUUAUAAAAUUCUUAAUUUCUCAG	AGGAUGGGGGAAACCCCAUACUCCUCACACACCAAAUCGCCCGAUUUAUCGGGCUUUUUU	0.2004204	0.8751146	pebB	1726486	phycoerythrobilin:ferredoxin oxidoreductase

Details of Selected Interaction Download Interaction Details

Target

Query

Energy

Hybridization Energy

Unfolding Energy - Target

Unfolding Energy - Query

Position - Target

Position - Query

Position Seed - Target

Position Seed - Query

Job resubmission

Use the following button if you want to resubmit the job with altered input or parameterization:

usability assessment

Please support us by filling this short quality survey for evaluating this

service.

When using IntaRNA please cite :

Martin Mann, Patrick R. Wright, and Rolf Backofen
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
Nucleic Acids Research, 2017, 45 (W1), W435–W439.
Patrick R. Wright, Jens Georg, Martin Mann, Dragos A. Sorescu, Andreas S. Richter, Steffen Lott, Robert Kleinkauf, Wolfgang R. Hess, and Rolf Backofen
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
Nucleic Acids Research, 2014, 42 (W1), W119-W123.
Anke Busch, Andreas S. Richter, and Rolf Backofen
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
Bioinformatics, 2008, 24 (24), 2849-56.
Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.

Results are computed with IntaRNA version 3.1.3 linking Vienna RNA package 2.4.14

Main Menu

Freiburg RNA Tools

Interaction Prediction

Seq-Str Alignment

CRISPR

Sequence Design

Splicing

SNP & Mutation

Classification

Gene set extension

MoDPepInt Server

CPSP-Tools Server

Galaxy-FR

CMV server

Teaching