STM3630 |
-43 |
-2 |
-21 |
-15 |
6.19 |
GcvB |
51 |
92 |
66 |
72 |
10.1 |
-20.93 |
-37.22 |
-2.02929 |
UUGCAAAGGGCAAAACAACAUACAUCACAAUUGGAGCAGAAG&CUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAA |
(((((((...((.((((((((((((((((((((.((((((((&)))))).))..))))))))))).))))))))).))))))))) |
AAAAAACAAAAAAGGCCGGGCGGUAAAAGCCUUUGCAAAGGGCAAAACAACAUACAUCACAAUUGGAGCAGAAGAAUGAGUAUUUCCUUGAAGAAGUCAGGGAUGCUGAAGCUUGGUUUGAGCCUGGUGGCCAUGACCGUUGCAGCAAGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
9.35e-05 |
0.2036716 |
dppA |
1255154 |
ABC transporter substrate-binding protein |
STM3598 |
58 |
75 |
64 |
70 |
4.01 |
GcvB |
62 |
79 |
67 |
73 |
5.83 |
-15.15 |
-24.99 |
-1.46889 |
AGCACAACGUCACUACCG&CGGUUGUGAUGUUGUGUU |
(((((((((((((.((((&)))).))))))))))))) |
AAAUGGUUCUGGCCUGAUUGUUAUUCAUGUUUUUAUAGCACACGCCACUUAUUAUUUUUAAUUCAGAGGAAGAAAAUGAAAAUUAGAGUUUUCAUGGCCACCGUGUUGCUGCUCAUCAGCCACUGUGUAUUUAGCACAACGUCACUACCG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0086358 |
0.7799855 |
|
1255121 |
putative L-asparaginase |
STM1282 |
56 |
70 |
64 |
70 |
2.38 |
GcvB |
36 |
50 |
36 |
42 |
5.56 |
-14.86 |
-22.8 |
-1.44077 |
CCCAGGAGAACGCGC&GCGUGUUCUGAUGGG |
((((..(((((((((&)))))))))..)))) |
AACAAAAACAACAUCGUUCAUCAUAGUGCUUCGCAGUAAAUGUUCAUAUUGCACCAGGAGUGAGAAAUGGCCGAAAUGACUGAAGUCGCGAAGGGUGUCGCUACACACCAACGUUUAGUGGCUUUAUUAACCCAGGAGAACGCGCGCUAU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0103458 |
0.7883581 |
yeaK |
1252800 |
putative cytoplasmic protein |
STM3843 |
7 |
49 |
43 |
49 |
16.07 |
GcvB |
37 |
85 |
37 |
43 |
13.09 |
-14.9 |
-44.06 |
-1.44465 |
CAUAACGACACUAUCGUCGCCCAGGCAACCCCACCGGGACGCG&CGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUG |
(((((((((((...((((((((((.(((.((((.(((((((((&))))))))).))))...))).))...))..))))))..))))))))))) |
AACGCUUAUCAGGCCUACAAUCAAAAGGCGGUCAUAUGACCGCCUUUUUUUAUUGCAACAAAGUUGAGACUAACCAUGAGCCAUAACGACACUAUCGUCGCCCAGGCAACCCCACCGGGACGCGGUGGCGUGGGUAUCCUGCGUAUUUCC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0100932 |
0.7883581 |
trmE |
1255370 |
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE |
STM1351 |
-23 |
26 |
18 |
24 |
10.93 |
GcvB |
145 |
186 |
147 |
153 |
6.71 |
-15.56 |
-33.2 |
-1.50864 |
GGCAUAAAAGGGGCUACGGCAUUAUGAGUUCGGACAAUAAGGUGAAUGU&ACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCC |
(((......((.(((((..(((((((....((((((....(((((((((&))))))))).))))))..)))))))......))))).))))) |
AACUAUCCUGUCACAUGCGAAAAAAAUUGGACUGGUGAAUCUAUUAAAAGACGGCAUAAAAGGGGCUACGGCAUUAUGAGUUCGGACAAUAAGGUGAAUGUUGACGUCAAAUUGGGCGUAAAUAAAUUUUACGUAGAUGAAGGACACCCA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0066498 |
0.7419678 |
ydiT |
1252869 |
ferredoxin family protein |
STM3720 |
14 |
23 |
14 |
20 |
2.2 |
GcvB |
154 |
163 |
157 |
163 |
1.28 |
-14.11 |
-17.59 |
-1.36805 |
GGAUAGACAG&CUGUCUGUCC |
((((((((((&)))))))))) |
AAGCCGCUCGAAUUAAAGAAAGGACAAUAAGAAAAAAUCUGUAAUUAUAAUAAUUAUGCACUCAGUGAGUAAUUUAUGAGUGAGACAAGGAUAGACAGAAUGUCUAACAUUAAAAGUUAUAUUUCAAACCAAAAAAACAUAAUUCAACAU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.016256 |
0.7979576 |
yibR |
1255244 |
putative inner membrane protein |
STM1564 |
19 |
40 |
32 |
38 |
3.82 |
GcvB |
72 |
90 |
74 |
80 |
4.11 |
-16.06 |
-23.99 |
-1.55712 |
GCAAAUACCUCAGCAGCACAAC&GUUGUGUUGUUGUGUUUGC |
((((((((...(((((((((((&))))))))))))))))))) |
AAUAUUUGCCAUGCUGAAUACGAAUUAAUUUUCUGCGAGCCGUACUAAAUAAAUACAUGUUCACGGAGGCAUUAUAUGUUUACUUAUCACUCAGCAAAUACCUCAGCAGCACAACCGGCCCUGGUCAACGCGAUUGAACAAGGAUUACGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.004788 |
0.6975035 |
yddX |
1253082 |
biofilm-dependent modulation protein |
STM2745 |
-21 |
11 |
-6 |
1 |
8.34 |
GcvB |
36 |
61 |
44 |
50 |
5.69 |
-14.8 |
-28.83 |
-1.43495 |
UGAGCCGACUGAUACCCCAUCAUGAAACGCGC&GCGUGUUCUGAUGGGCUUUUGGCUUA |
((((((((.......(((((((.((.((((((&)))))))))))))))...)))))))) |
AAUCCGUCAGUGGCAACAGCGCCGCACCGUCAUCCGUUAAUCCACGCUCAGGGAUGAGCCGACUGAUACCCCAUCAUGAAACGCGCGCCCUUUCUCUGUAAGCAGUCUCCGGACCGCACGCUCGAAGUGGUGAUCCUUGCCGGAAGCCUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0107353 |
0.7904009 |
|
1254268 |
|
STM3567 |
-51 |
-28 |
-45 |
-39 |
4.12 |
GcvB |
63 |
87 |
75 |
81 |
7.58 |
-15.35 |
-27.05 |
-1.48828 |
AACACCACAACACACGUAACAACC&GGUUGUGAUGUUGUGUUGUUGUGUU |
(((((.(((((((((((.((((((&)))))).)))).))))))).))))) |
AAUCGAAAUAAAGUGCUGAACAAUAACACCACAACACACGUAACAACCAGAAUAAUGGGGAUUAUCAGGAUGAAUAUGAAGGGUAAAACGUUAUUGGCAGGAUGUAUCGCCCUGUCAUUAAGCCAUAUGGCAUUCGCCGACGACAUUAAA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0076089 |
0.7711365 |
livJ |
1255090 |
high-affinity branched-chain amino acid transporter |
STM2818 |
-20 |
-9 |
-20 |
-14 |
2.85 |
GcvB |
153 |
164 |
158 |
164 |
1.39 |
-18.09 |
-22.33 |
-1.75394 |
UGGACAGGCGGG&CCUGUCUGUCCA |
((((((((((((&)))))))))))) |
AAUUGUAGGUUUGGCAUGUAUGGCCGCCAUUACAGUUAUGCUUAUUAAAACGAUUUGGACAGGCGGGAGGUCAAUUUGAUCCCGGACGUAUCACAGGCUCUGGCCUGGCUGGAAAAACAUCCUCAGGCGUUAAAGGGGAUACAGCGCGGG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.001114 |
0.4343002 |
gshA |
1254341 |
glutamate--cysteine ligase |
STM0689 |
-9 |
15 |
5 |
11 |
2.15 |
GcvB |
66 |
90 |
71 |
77 |
6.6 |
-16.13 |
-24.88 |
-1.5639 |
GCAAACCCUAUGGCACAACACACA&UGUGAUGUUGUGUUGUUGUGUUUGC |
((((((...(((((((((((((((&)))).)))))))))))...)))))) |
ACAUGCGGGGGAUACAGGCAACUGACCCGCAACAUCUUACCCAUAAAACAAUAAAGACAGUGGAGAGCAAACCCUAUGGCACAACACACACCUGCAACAUCGCGCGCCGGCACGUUCGGCGCAAUACUGCGCGUGACAAGCGGCAAUUUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0045687 |
0.6975035 |
citA |
1252209 |
citrate-proton symporter |
STM1879 |
-34 |
15 |
6 |
12 |
6.01 |
GcvB |
49 |
86 |
52 |
58 |
10.91 |
-14.44 |
-31.36 |
-1.40005 |
AUAUAACAAAUAUUAACGCAAAAGAAAAAACGACAUGUUGCCAAAAGCC&GGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGU |
((((((((.......((((((........(((((..((.((((((((((&))))))))))..)).)))))....)))))))))))))) |
ACCGGGACUACCAUGCUACGCCGCUGUGUUUGCCGCGUGAUAUAUAACAAAUAUUAACGCAAAAGAAAAAACGACAUGUUGCCAAAAGCCAAUCGAAUUCCCUAUGCCAUGACCGUACAUGGCGAUACGCGCAUUGAUAAUUAUUACUGG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0133605 |
0.7904009 |
ptrB |
1253400 |
oligopeptidase B |
STM2793 |
-73 |
-48 |
-63 |
-57 |
4.05 |
GcvB |
49 |
72 |
56 |
62 |
8.51 |
-14.28 |
-26.84 |
-1.38453 |
CGUUUCGAUUGUAGGCCGAAUAAGCC&GGCUUUUGGCUUACGGUUGUGAUG |
(((..(((((((((((((((..((((&)))))))))))))))))))..))) |
ACCGUUUCGAUUGUAGGCCGAAUAAGCCAGGCGCCAUCCGGUAAACGAGCGCAAUAACAAUAAAGAGGUUUUAGGAUGGGGCAAUUGUCAGAAUCACAUGCAUUAGGGGGCGGGCUGAAAUCACGCCACGUCACCAUGUUAUCGAUCGCC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0147012 |
0.7904009 |
gabP |
1254316 |
GABA permease |
STM3021 |
29 |
67 |
43 |
49 |
10.69 |
GcvB |
50 |
91 |
72 |
78 |
10.46 |
-14.5 |
-35.65 |
-1.40586 |
UGCAACAUGACGCCAUACAACGUCGCUCGCUGCCGGAGC&GCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCA |
(((((((((((...((((((((((((.((..((((((((&)).))))))...))...)))))))))))).))))))).)))) |
ACCUAUCUACUUUAUCGAUGGAUGUUAUCUUUUAGGUAUCACAUUAAACGAUAAAAUAGCGGAAAUUUCUUUAGCUUGAUUAAGAGUAAGGUUUUUUCGUUUAUGCAACAUGACGCCAUACAACGUCGCUCGCUGCCGGAGCGUAUUUUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0128866 |
0.7904009 |
|
1254544 |
putative inner membrane protein |
STM1033 |
42 |
70 |
60 |
66 |
5.67 |
GcvB |
132 |
162 |
137 |
143 |
7.38 |
-15.02 |
-28.07 |
-1.45628 |
GACAGCAGGGAACGGACGCGGGGAGGGAA&UUUCACUUCCUGUACAUUUACCCUGUCUGUC |
((((((((((........(((((((((((&)))).)))))))........))))).))))) |
ACGAAAACCGUAAGCUGGGACUGGUAUUUGAUACUGAUCCGGCACAUGACCCGGGGGAACAGGAUAAUGCCGGAAGUGAAGACAACAGUGGCGGCGAUAAAAAUGCCGCCGGUGAUGACAGCAGGGAACGGACGCGGGGAGGGAAGCAGU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0093682 |
0.7883581 |
|
1252551 |
Gifsy-2 prophage Clp protease-like protein |
STM1498 |
-54 |
-38 |
-48 |
-42 |
4.66 |
GcvB |
76 |
92 |
80 |
86 |
3.94 |
-16.29 |
-24.89 |
-1.57942 |
UUGCGAACACAACGACA&UGUUGUUGUGUUUGCAA |
(((((((((((((((((&))))))))))))))))) |
ACGCGCCCGGAGCUCCCCGUUUUGCGAACACAACGACAUUUAAAACUCUUUUUUGGAUGAGCAUAGUGAGCUGUUAUGAAAAUCACCAACCCUGAGGCAUUAAUGGCGGCCAGUCUCAGCCGACGAAGCCUGGUGAAAACCUCCGCUAUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0041011 |
0.6975035 |
|
1253016 |
dimethyl sulfoxide reductase subunit A |
STM3527 |
-66 |
-47 |
-54 |
-48 |
2.5 |
GcvB |
139 |
163 |
140 |
146 |
4.45 |
-14.85 |
-21.8 |
-1.4398 |
GGACAACAGUUGGUGCAGGA&UCCUGUACAUUUACCCUGUCUGUCC |
(((((((((...((((((((&)))))))).......)))).))))) |
AGCCCGCAGGGACAACAGUUGGUGCAGGAUGUGGGAUAUGUGCCGCUGUAUCCGGCCGCGAAAUAAAGGGACUAAAUGGAAGAGGUUAAAUUAUAUGUGGAACGGGUUGGCAUAGACCCGGCCAGCGGCGCUGAUAUUCGUAUUGCACGG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0104098 |
0.7883581 |
|
1255050 |
similar to E. coli orf hypothetical protein (AAC73602.1) Blastp hit to AAC73602.1 (86 aa) 35% identity in aa 21 - 85 |
STM3680 |
58 |
70 |
64 |
70 |
0.52 |
GcvB |
48 |
60 |
48 |
54 |
4.2 |
-14.26 |
-18.98 |
-1.38259 |
AAGUUAAAAGCCC&GGGCUUUUGGCUU |
(((((((((((((&))))))))))))) |
AGCGGGAAAUCAUUGGCGAAAAAUUCACCAGCACCGUCUACCCUUGUGGAGUACCUUUACAAUAAGGAGUUGGUCAUGACGAACAAUCCCCCUUCAACACGUAUUCAGCCAGGUGAAUACGGGUACCCACUGAAGUUAAAAGCCCGCUAU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0148769 |
0.7904009 |
aldB |
1255204 |
aldehyde dehydrogenase |
STM1179 |
22 |
44 |
38 |
44 |
7.1 |
GcvB |
35 |
58 |
35 |
41 |
5.79 |
-16.06 |
-28.95 |
-1.55712 |
GCCAAAACCGGUCUGGACGCGCA&UGCGUGUUCUGAUGGGCUUUUGGC |
(((((((((..((.(((((((((&))))))))).))..)).))))))) |
AGGUUAUCACCAGCGUAGAUGAGAACGAAGGGCGAGCUAACCAACUGCUGUCGAUGAGUUAAUACAGGACAUUUUAUGAUCAGUUCAUUAUGGAUCGCCAAAACCGGUCUGGACGCGCAGCAAACCAAUAUGGAUGUGAUUGCCAAUAAC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.004788 |
0.6975035 |
flgG |
1252697 |
flagellar basal-body rod protein FlgG |
STM3083 |
-36 |
-6 |
-13 |
-7 |
4.19 |
GcvB |
130 |
160 |
131 |
137 |
6.26 |
-15.04 |
-25.49 |
-1.45822 |
CAGAAUUGGUAAACAAAACAGGAGUGGGAAA&UUUUUCACUUCCUGUACAUUUACCCUGUCUG |
((((...((((((....((((((((((((((&)))))))).))))))...))))))...)))) |
AGUGUGAUCAUAUUCACGGAUUUUGGUAUGGUGUUUAAGCAGAAUUGGUAAACAAAACAGGAGUGGGAAAAAUUCAUGGACACCAUAGCUCGCCAGUUAGACGCCGCAAGGCACCAAUUCAAAACGACUUAUUCACGUCAGGGAAUGGAA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.009252 |
0.7883581 |
|
1254606 |
fructuronate reductase |
STM0670 |
-75 |
-37 |
-67 |
-61 |
8.3 |
GcvB |
36 |
78 |
63 |
69 |
10.84 |
-14.61 |
-33.75 |
-1.41653 |
AUACUGGUCACAACCGCGCCAAAGCAUUACACUAUGCGC&GCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGU |
((((...(((((((((.((((((((....((..((((((&))))))..))....)))).))))...)))))))))....)))) |
AUACUGGUCACAACCGCGCCAAAGCAUUACACUAUGCGCCCUGCUUUUCAGCCACUAUUUCGCAAGAGCAAGUCGAUGACUAAAAAACUCCAUAUUAAAACCUGGGGCUGUCAGAUGAACGAGUACGAUUCAUCGAAGAUGGCCGAUCUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0120567 |
0.7904009 |
miaB |
1252190 |
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB |
STM1856 |
-40 |
-18 |
-39 |
-33 |
1.92 |
GcvB |
64 |
87 |
80 |
86 |
7.14 |
-17.01 |
-26.07 |
-1.64922 |
AACACAACAUAUAACAUUAUAAC&GUUGUGAUGUUGUGUUGUUGUGUU |
(((((((((((((((((((((((&))))))))))))))).)))))))) |
AUAUCUGUAUGGCUGCUUUUAAGCAACAAUACUCUAACACAACAUAUAACAUUAUAACUUACAAUAGGUUAACAAAUGGAAUUACAGCUUAUGCUUAACCACUUUUUCGAGCGCGUCAGAAAGGAUGCAAAUUUCAACGCAUUUCUAAUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0024848 |
0.659913 |
|
1253375 |
similar to E. coli orf hypothetical protein (AAC74245.1) Blastp hit to AAC74245.1 (134 aa) 40% identity in aa 1 - 127 |
STM1715 |
-75 |
-43 |
-52 |
-46 |
2.7 |
GcvB |
42 |
71 |
45 |
51 |
9.85 |
-16.36 |
-28.91 |
-1.5862 |
AUCAAUUUCCUGUGAGAAUAUUUGCCCAUCAGA&UCUGAUGGGCUUUUGGCUUACGGUUGUGAU |
((((.....(((((((.......((((((((((&))))))))))......)))))))...)))) |
AUCAAUUUCCUGUGAGAAUAUUUGCCCAUCAGAAGUGCUCAGCGUAGACUAAUCUCCUUGUUUAAGGAGUAAAAAAUGCAUAAAGAGACGCAACCUAUCGAUCGCGAAACACUGUUGCUUGAAGCCAACAAAAUUAUUCGGGAACAUGAA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0039103 |
0.6975035 |
yciN |
1253234 |
similar to E. coli orf hypothetical protein (AAC74355.1) Blastp hit to AAC74355.1 (83 aa) 92% identity in aa 1 - 83 |
STM2526 |
-32 |
-17 |
-31 |
-25 |
0.58 |
GcvB |
71 |
86 |
79 |
85 |
3.06 |
-14.36 |
-18 |
-1.39229 |
ACAUAACAACAGAACA&UGUUGUGUUGUUGUGU |
(((((((((((.((((&)))).))))))))))) |
AUCCAUAGGCAAUUGAUGGGAUGCUCUUUAUAAUCCGCGCCUGACAUAACAACAGAACAUAUUUCAGAGGUAAACAUGGCUAUUGAACGGACUUUUUCCAUCAUUAAACCCAACGCGGUGGCAAAAAACGUUAUUGGCAGCAUCUUUGCG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0140165 |
0.7904009 |
ndk |
1254048 |
nucleoside-diphosphate kinase |
STM1953 |
-28 |
28 |
18 |
24 |
12.25 |
GcvB |
31 |
87 |
36 |
42 |
16.22 |
-18.8 |
-47.27 |
-1.82278 |
AACACACCACAACGUUACCGGAGGCUCAAUGCCACUACAUCACUUAACGCGCUUCC&GGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUU |
((((((((((((((((((((.((((.(((.(((....(((((...(((((((((((&)))).))))))).))))))))..))))))).)))...))))))))))..)).))))) |
AUCGGCGCCUUUUUUAUUUCCGUUAGAUCAACGUGCAUAAUAAAAAGAACACACCACAACGUUACCGGAGGCUCAAUGCCACUACAUCACUUAACGCGCUUCCCUCGCCUGGAGUUUAUCGGCGCGCCGACCCCGCUCGAAUACCUGCCG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0006334 |
0.3847632 |
yedO |
1253474 |
D-cysteine desulfhydrase |
STM1057 |
1 |
43 |
4 |
10 |
7.59 |
GcvB |
37 |
81 |
72 |
78 |
10.7 |
-14.2 |
-32.49 |
-1.37678 |
AUGACACAACAGCCACAAGCCAAAUACCGCCAUGACUAUCGCG&CGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGU |
(((((((((((..(((((((((((.....((((......((((&)))).....))))...)))))))......)))).))))))))))) |
AUUCUGCGUAGCGCGAUUUGCGCAACAGGAAUAGACUGGAGUCGACACUCUACACAAAGAUGCGAAAGGUUUUUUAUGACACAACAGCCACAAGCCAAAUACCGCCAUGACUAUCGCGCGCCGGAUUACCAGAUUACUGAUAUUGACUUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0154155 |
0.7979576 |
pepN |
1252575 |
aminopeptidase N |
STM3257 |
-68 |
-44 |
-63 |
-57 |
1.65 |
GcvB |
46 |
81 |
70 |
76 |
9.96 |
-13.98 |
-25.59 |
-1.35545 |
ACAAAACAACAUUACGAAAGCCUAU&AUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGU |
((((.((((((((((((((((((((&))))))))...........)))))))))))).)))) |
CAAAAUCACAAAACAACAUUACGAAAGCCUAUAAAUUCUUUCGAAGAAGAAAAACGAAAGAACUCGGAGAUAAAAGUGAAAGAAAUAAUUGCUCGUCAUAAAGCAGGAGAACAUCUGGGCAUCUGUUCAGUUUGUUCUGCUCAUCCCCUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0175423 |
0.8300455 |
|
1254780 |
D-tagatose-16-bisphosphate aldolase subunit GatZ |
STM0085 |
63 |
75 |
69 |
75 |
2.29 |
GcvB |
152 |
164 |
152 |
158 |
1.44 |
-14.92 |
-18.65 |
-1.44659 |
UGAACAGGCAGGG&CCCUGUCUGUCCA |
((.((((((((((&)))))))))).)) |
CAAUAAUAUUCACUAUUAGCCUGGCGAAUUUGUCACUACACUUUGUAAUAAAAAACAGAUCAUCACAGGCUAAUCAUGAUCCUCAUUAUUUAUGCGCAUCCGUAUCCGCAUCAUUCUCAUGCGAAUAAGCGGAUGCUUGAACAGGCAGGG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.009969 |
0.7883581 |
yabF |
1251603 |
glutathione-regulated potassium-efflux system ancillary protein KefF |
STM0369 |
2 |
69 |
8 |
14 |
12.59 |
GcvB |
31 |
91 |
80 |
86 |
17.22 |
-18.82 |
-48.63 |
-1.82471 |
UGACAGACACGACGAUCCUGCAAAACAACACGCAUGUCAUUAAGCCUAAAAAAUCGGUCGCGCUUUCC&GGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCA |
((.((((((((((((.....((..(((((.((...((((..(((((((.....((((.((((..((((&))))..))))..))))))))))).))))...)))))))..)).....)))))))))))))) |
CACUACGUUUAACCCGCCUACGGUACGGCCUACACGCCUCAAUACCCUACACAUUACAAUAAUGACGAGGACAAUAUGACAGACACGACGAUCCUGCAAAACAACACGCAUGUCAUUAAGCCUAAAAAAUCGGUCGCGCUUUCCGGCGUA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0006231 |
0.3847632 |
prpC |
1251888 |
2-methylcitrate synthase |
STM1257 |
-35 |
-12 |
-32 |
-26 |
7.95 |
GcvB |
166 |
189 |
180 |
186 |
6.29 |
-13.92 |
-28.16 |
-1.34963 |
UGUGGUGGUGCUUAAUCGAUCGCU&AGUGAUUAAUGUAGCACCGCCAUA |
((((((((((((..((..((((((&))))))..))..)))))))))))) |
CACUAUUAGUGUUUGCCGGAAAUACGAUUUCAGCCUGGCUUGUGGUGGUGCUUAAUCGAUCGCUGGAGCGUCCCGAUGCUCUAUAAUCCUGCCCCGACGUUGUUUCGUCUGCUCCUCUCCGUUACCUGUCUGCUGUUUAUUGCCGGAUAC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.018166 |
0.8371189 |
|
1252775 |
peptide ABC transporter permease |
STM0604 |
4 |
22 |
15 |
21 |
2.05 |
GcvB |
62 |
80 |
63 |
69 |
6.09 |
-15.71 |
-23.85 |
-1.52318 |
CAACACCGACUCACAACCG&CGGUUGUGAUGUUGUGUUG |
(((((.(((((((((((((&))))))))).))))))))) |
CAGUCCGACAAAACCUAAGAAUUACCAGCGUUAUAACGAACGUAUGAAAGCUAAACGCCAGGAAUGGGGGAUCUUAUGCAACACCGACUCACAACCGAAAUAACUCACUUUCUCUCUGAACUGCCUGAAGAGGAGAGGAUCGCCGCCAUU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0060327 |
0.7419678 |
ybdM |
1252124 |
similar to E. coli orf hypothetical protein (AAC73702.1) Blastp hit to AAC73702.1 (209 aa) 77% identity in aa 5 - 209 |
STM3251 |
-5 |
39 |
5 |
11 |
7.81 |
GcvB |
45 |
87 |
72 |
78 |
12.16 |
-20.16 |
-40.13 |
-1.95464 |
AACGCAUGAACAUAACAAUCGCAACAUUGGGUGAAUUGCUCGUC&GAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUU |
((((((..(((((((((.(((((((..((((..((..(((((((&)))))))..))..))))..))))))))))))))))..)))))) |
CCAACAGCUAUACCAAUAACGAAUGUCUGACCUGGAUAAACCCGACCCUGCAUCAGGCAAGAUGAAGGACAACGCAUGAACAUAACAAUCGCAACAUUGGGUGAAUUGCUCGUCGAGUUUCUGGCAAAAAAAGAGAACCAGGGAUUUUCC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0001949 |
0.2200421 |
|
1254774 |
sugar kinase |
STM4250 |
10 |
38 |
18 |
24 |
10.09 |
GcvB |
49 |
80 |
66 |
72 |
9.49 |
-14.64 |
-34.22 |
-1.41944 |
CAGCGCACCAUUACACUGAGCGAGAAGCC&GGCUUUUGGCUUACGGUUGUGAUGUUGUGUUG |
(((((((.(((((((((((((.(((((((&))))))).)))..))).))))))).))))))) |
CCCCGCUGGCUUUUACCUUUUCCAGACUUGCUGCACACUAUUCAGGAGACGUUUGUUUUUAGGAAGGAGCAGCCUAUGUGGUAUCAGCGCACCAUUACACUGAGCGAGAAGCCGCGCGGGUUUCAUCUGAUAACAGAUGAAAUUACCGAU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0118389 |
0.7904009 |
yjbQ |
1255776 |
similar to E. coli orf hypothetical protein (AAC77026.1) Blastp hit to AAC77026.1 (138 aa) 78% identity in aa 1 - 138 |
STM3236 |
25 |
40 |
34 |
40 |
5.36 |
GcvB |
154 |
169 |
154 |
160 |
2.34 |
-15.54 |
-23.24 |
-1.5067 |
CAAUGUGGACAGGCAG&CUGUCUGUCCAUAGUG |
((.(((((((((((((&))))))))))))).)) |
CCGGGCAGAAUAUCUGGCUAACAAUGCAGCGUCCAGCCCCUUAACAUAAAAGGAAGUAAAGAGAGGUUAAUAACGAUGAUUACGACCCGAACCGCCAAACAAUGUGGACAGGCAGACUACGGAUGGCUACAGGCCCGCUAUACCUUCUCC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0067362 |
0.7419678 |
yhaK |
1254759 |
similar to E. coli orf hypothetical protein (AAC76141.1) Blastp hit to AAC76141.1 (233 aa) 84% identity in aa 1 - 233 |
STM4465 |
-72 |
-28 |
-55 |
-49 |
17.78 |
GcvB |
43 |
78 |
56 |
62 |
9.94 |
-15.94 |
-43.66 |
-1.54548 |
ACAGAGCGCGCAUAACCGUGGGCCGGAUAAGCGCAGCGCCAUCAG&CUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGU |
(((.(((...(((((((((((((((((.......(((.(((((((&)))))))))))))))))))))))))))..))).))) |
CCUACAGAGCGCGCAUAACCGUGGGCCGGAUAAGCGCAGCGCCAUCAGGCAAUUCAUUUUAACAAGGAUAUUGUAAUGGUUAUUUCACUGAAAAAUCGUAACUUUUUGAAGCUGCUUGACUACACCCCGGCGGAAAUCCAACACCUCAUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.005186 |
0.7318742 |
|
1255991 |
putative ornithine carbamoyltransferase |
STM2328 |
11 |
48 |
11 |
17 |
9.42 |
GcvB |
32 |
75 |
69 |
75 |
13.51 |
-14.14 |
-37.07 |
-1.37096 |
CAACAUCCACUGAAGUCAUCGCUCAUCACUGGGCAUUC&GAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUG |
((((((((((((((((((..((((((((....((((((&))))))......))))))))...)))))).))).)).))))))) |
CCUCCCCAUGAAUCGAUGUGGCGCCCAUCUGCCGUAAAGAGCAGAGAAACUGGCGCUACUUUUGAUGAGUAAGCAAUGAGUAUGUCAACAUCCACUGAAGUCAUCGCUCAUCACUGGGCAUUCGCUAUCUUUCUUAUCGUUGCCAUUGGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0159714 |
0.7979576 |
nuoA |
1253850 |
NADH-quinone oxidoreductase subunit A |
STM0680 |
-43 |
-18 |
-25 |
-19 |
4.75 |
GcvB |
71 |
90 |
72 |
78 |
4.12 |
-14.91 |
-23.78 |
-1.44562 |
GCAAAUACAAAAAGUACGACGCAACA&UGUUGUGUUGUUGUGUUUGC |
(((((((((......(((((((((((&)))))))))))))))))))) |
CCUUCCACGCCUUUGCGGCAUUUUUUAGUCAAGCAAAUACAAAAAGUACGACGCAACAGAUUAACGGAGAAGGCUAUGUGUUCUAUUUUCGGCGUAUUCGAUAUCAAAACAGAUGCAGCGGAACUGCGUAAAAAAGCCCUUGAACUGUCA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0100309 |
0.7883581 |
asnB |
1252200 |
asparagine synthetase B |
STM1789 |
-10 |
11 |
5 |
11 |
3.84 |
GcvB |
35 |
55 |
35 |
41 |
5.74 |
-17.32 |
-26.9 |
-1.67928 |
AGGAGCCCUCAUGAAUGCGCA&UGCGUGUUCUGAUGGGCUUUU |
(((((((((((.(((((((((&)))))))))))).)))))))) |
CGAUACGGUGAUCUCCACCAUGAUCAAUGGCUAUCGCAGCCAUAAAUUCCCCAAACCGCACGACAAGGAGCCCUCAUGAAUGCGCAACGCGUAGUGGUGAUGGGGUUAGGAAACCUGCUGUGGGCCGAUGAAGGAUUCGGUAUCCGGGUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0019866 |
0.598099 |
|
1253308 |
hydrogenase expression/formation protein |
STM2189 |
-6 |
10 |
2 |
8 |
3.03 |
GcvB |
155 |
171 |
158 |
164 |
2.56 |
-15.31 |
-20.9 |
-1.4844 |
AUCAUUAUGGGCAGCA&UGUCUGUCCAUAGUGAU |
((((((((((((((((&)).)))))))))))))) |
CGCAGACCGGAUAACGUAUUUCUUUUGCCAUCCGGCGCGGAUAGUCAUAAUUAAAAAGGCCGACAGGGUAUCAUUAUGGGCAGCACGAUUUCUCCGCCGUCGGGUGAAUAUUUGUUGGAAAUGCGUGGCAUUAACAAAUCAUUUCCCGGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0078051 |
0.7711365 |
mglA |
1253711 |
galactose/methyl galactoside ABC transporter ATP-binding protein MglA |
STM4007 |
-39 |
-20 |
-26 |
-20 |
2.82 |
GcvB |
63 |
85 |
63 |
69 |
7.27 |
-13.85 |
-23.94 |
-1.34284 |
CACGACGACCGACCAUGACC&GGUUGUGAUGUUGUGUUGUUGUG |
((((((((((((((((((((&)))))))..)))).))))))))) |
CGGCGACACGGCCAGCAGAAUUGAAGAUCUCGUUACCACGACGACCGACCAUGACCAAUCCGGGAGAGUACAAGUAUGUCCGCUGAACACGUUUUGACGAUGCUGAACGAGCACGAAGUGAAGUUUGUCGAUCUGCGCUUCACCGAUACC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0189185 |
0.8629894 |
glnA |
1255533 |
type I glutamate--ammonia ligase |
STM0330 |
-25 |
-8 |
-14 |
-8 |
4.13 |
GcvB |
152 |
170 |
152 |
158 |
2.51 |
-14.16 |
-20.8 |
-1.3729 |
UCAUUACUUCAGGCAGGG&CCCUGUCUGUCCAUAGUGA |
((((((...(((((((((&)))))))))....)))))) |
CGGCGAUGGUUGCGGCGGCGGCGGUAGCGGGGCAUCUGGUCGAUGUUCGGUCAUUACUUCAGGCAGGGGAAUAAGAUGGAUACGUUUAAGCAAAUCAGCGGGCGAAUUGCGCCGAUGCUGGAACCGAAUAUCGACACUGAUGUGAUUAUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0157842 |
0.7979576 |
|
1251849 |
3-isopropylmalate dehydratase small subunit |
STM3261 |
59 |
74 |
68 |
74 |
0.94 |
GcvB |
54 |
69 |
54 |
60 |
6.65 |
-14.26 |
-21.85 |
-1.38259 |
CACAACUGCAAGCCGA&UUGGCUUACGGUUGUG |
((((((((.(((((((&))))))).)))))))) |
CGGCGCUACAGCAAAGUCAAAUCGCCUCUUAAUUUUAGGGGAGCAAUCGCUCCCCUCACCUUCCUGGAGAAUGUUAUGAAAUCAGUGGUUAUUCACGCUGAGGGAGACGUGCGCGUUGAAGAACGUCCCUUACCACAACUGCAAGCCGAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0148769 |
0.7904009 |
|
1254784 |
galactitol-1-phosphate 5-dehydrogenase |
STM0283 |
41 |
60 |
54 |
60 |
3.62 |
GcvB |
152 |
169 |
152 |
158 |
2.38 |
-16.47 |
-22.47 |
-1.59687 |
CAGUAUGUGGCGUGACGGGG&CCCUGUCUGUCCAUAGUG |
((.((((.(((..(((((((&))))))).))))))).)) |
CGGUGGCGGAUAACGGCAGUAAAGCCGGGCGGGCGAAAAACCGUCGGGUGGAAAUUCUGGUAGUGGAGUGAAUGAAUGAUGAAAAAAUCAACCUAUGAUGUGUCUCAUCAUUCGGCAGUAUGUGGCGUGACGGGGGAUUAUUAUCGGAUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0036267 |
0.6975035 |
|
1251802 |
|
STM4228 |
-39 |
-26 |
-33 |
-27 |
7 |
GcvB |
1 |
15 |
2 |
8 |
4.12 |
-14.12 |
-25.24 |
-1.36902 |
UCCGGCCAGGAAGU&ACUUCCUGAGCCGGA |
((((((((((((((&)))))))).)))))) |
CGUAGGCCUGAUAAGCGCAGCGCCAUCAGGCACAUCUCCGGCCAGGAAGUUUCAACGCUGUAGAGGAAAACCCCCAUGGAUGUCAUUAAAAAGAAACACUGGUGGCAAAGCGACCAGCUUAAAUGGUCAGUAAUUGGUCUGCUGGGCCUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0161607 |
0.7979576 |
malF |
1255754 |
maltose ABC transporter permease MalF |
PSLT042 |
2 |
70 |
53 |
59 |
9.48 |
GcvB |
37 |
91 |
47 |
53 |
14.15 |
-14.17 |
-37.8 |
-1.37387 |
UGCCGAUCAUAGCAGCAAUUCCUGAUGAAGAACGACAACUGAUGCGCAAAGAGGCCCAACAAACCCACG&CGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCA |
((.(((.(((((((((........((((......(((((((....((..(((((((((.((....((((&))))...)).))))))))).))...)))))))....))))))))))))).))))) |
CUGAAAGGGAACUCAGCCCGGAUUGUGCGAUCUGAUCAAUCGCCAAACAUCACAAAUCACCAACCGGACUGAGCGAUGCCGAUCAUAGCAGCAAUUCCUGAUGAAGAACGACAACUGAUGCGCAAAGAGGCCCAACAAACCCACGAUAAA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0156913 |
0.7979576 |
|
1256195 |
putative integrase protein |
STM0022 |
-74 |
-55 |
-63 |
-57 |
2.39 |
GcvB |
127 |
147 |
129 |
135 |
5.89 |
-14.36 |
-22.64 |
-1.39229 |
UGUUGGGAGGCGAGAAAGGG&CCCUUUUUCACUUCCUGUACA |
(((..(((((.(((((((((&))))))))).)))))...))) |
CUGUUGGGAGGCGAGAAAGGGGCGUUACGCGCGUCACUGCGCGUAACAAACCGACGGCAUCAGGAUAUUACGCAGAUGAAAAAAAACGUACCGAUUUUCCUUCGAUUAUUGCUACUGCUGUCGGCGGCCGGCCUGUCGUUUGCCGCGCAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0140165 |
0.7904009 |
bcfB |
1251540 |
fimbrial chaperone protein |
STM0001 |
-71 |
-15 |
-35 |
-29 |
4 |
GcvB |
141 |
186 |
155 |
161 |
8.64 |
-18.71 |
-31.35 |
-1.81405 |
GGCGGGCAGAUACUUUAACCAAUAUAGGAAUACAAGACAGACAAAUAAAAAUGACAG&CUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCC |
(((((((...(((.((((.((.(((.((........(((((((......((((((((&)))).)))).....)))))))))))).)).)))).))))).))))) |
CUUAGGCGGGCAGAUACUUUAACCAAUAUAGGAAUACAAGACAGACAAAUAAAAAUGACAGAGUACACAACAUCCAUGAACCGCAUCAGCACCACCACCAUUACCACCAUCACCAUUACCACAGGUAACGGUGCGGGCUGACGCGUACAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0006816 |
0.3847632 |
thrL |
1251519 |
thr operon leader peptide |
STM3093 |
-66 |
-41 |
-47 |
-41 |
4.25 |
GcvB |
72 |
101 |
72 |
78 |
11.77 |
-15.59 |
-31.61 |
-1.51155 |
GCGGACUGAUUGCAUACAGACACAAC&GUUGUGUUGUUGUGUUUGCAAUUGGUCUGC |
((((((((((((((((((.(((((((&)))))))...)))))..))))))))))))) |
CUUUCCUGAGCGGACUGAUUGCAUACAGACACAACUUUCGUUACGUUGCGGGCUCGUUUUGCUAUGGAGUGUGCAAUGUACCGUAAUUUUUCUUUUGCCGCUGCGUUGCUGGCCGCAGCGUUUUCAGGCCAGGCCCUGGCCGAUGGCAUU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.006522 |
0.7419678 |
endA |
1254616 |
deoxyribonuclease I |
STM3609 |
2 |
53 |
15 |
21 |
10.96 |
GcvB |
25 |
91 |
71 |
77 |
19.1 |
-17.04 |
-47.1 |
-1.65213 |
UGCAAGCAACCGCCACAACACUCGACCAUGAGCAGGAACAUGUUCCGGUAAA&UUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCA |
((((((((.....(((((((..(((((.(((((..(((((((((((((((((&))))))))))..))))))).............))))).)))))...)))))))......)))))))) |
CUUUUGUUACACAUUGAAAUAUAACUUUUGCUGUGCGUAAUAUGGCUAUUCGUUCGCUAAAAAUAAGAAAAUAGUAUGCAAGCAACCGCCACAACACUCGACCAUGAGCAGGAACAUGUUCCGGUAAACUCACGCAAUAAAGUCGUUAUU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0024321 |
0.659913 |
yhjE |
1255132 |
MFS transporter |
STM4014 |
56 |
73 |
63 |
69 |
5.12 |
GcvB |
36 |
58 |
40 |
46 |
5.66 |
-15.86 |
-26.64 |
-1.53772 |
GCCCCCAUCAGAGCAAGC&GCGUGUUCUGAUGGGCUUUUGGC |
(((((((((((((((.((&)).)))))))))))).....))) |
GAAGCUCUGGAGCCUGAUGAUUACGAUGGCGAUAUUUAUAUGAAUGCGAUGUACACCGAGUGAUUGAGUAGGGGAAUGUGCACAUUCCCCUACUCAACGAUAAAGGGAUUUAUUGUGAUUACGCUCAUUGGCCCCCAUCAGAGCAAGCGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0054675 |
0.7419678 |
|
1255540 |
putative periplasmic protein |
STM3665 |
-33 |
-19 |
-27 |
-21 |
0.57 |
GcvB |
154 |
169 |
156 |
162 |
2.34 |
-15.78 |
-18.69 |
-1.52997 |
CACUUUGACAGACAG&CUGUCUGUCCAUAGUG |
((((..(((((((((&)))))))))...)))) |
GACCCCCAUUUGCGCCCCGCCAUUUGUAGCGUUAUGGUUAUCCACUUUGACAGACAGUUCGAUAGAUCACCCGUUAUGACAUUUUCACUUUUCGGCGAUAAAUUUACCCGCCAUUCAGGCAUUACCCGCCUGAUGGAGGAUCUCAACGAC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0057627 |
0.7419678 |
avtA |
1255189 |
valine--pyruvate transaminase |
STM2355 |
-57 |
-39 |
-48 |
-42 |
3.35 |
GcvB |
72 |
91 |
75 |
81 |
4.11 |
-16.13 |
-23.59 |
-1.5639 |
UGCAAACACACAACGCCAC&GUUGUGUUGUUGUGUUUGCA |
((((((((((((((((.((&)).))))))).))))))))) |
GACCUGCAUGAAAAAGUCUGCAAACACACAACGCCACGUAAAACAUAAGAAAAUGACGCCACUUGAGGGGUAUGUAUGAAGAAGACCGUUCUCGCUUUGUCUUUGCUGAUAGGUCUGGGCGCGACGGCGGCCAGUUACGCCGCGCUCCCG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0045687 |
0.6975035 |
argT |
1253877 |
histidine ABC transporter substrate-binding protein HisJ |
STM3495 |
52 |
64 |
57 |
63 |
3.25 |
GcvB |
181 |
193 |
182 |
188 |
2.72 |
-16.35 |
-22.32 |
-1.58523 |
GCAAUAUGGCGGU&ACCGCCAUAUUGC |
(((((((((((((&))))))))))))) |
GCCAACCACAGAAAAAUGUUUAUUGGACAGGGUGCGACUGACCACGCCUGACAGACUUAGUAAGAUGGGGAAAGCAUGAGCACCAUUCUGAUUUUUAUAGCUGCUUUGCUGGCCUGCUCUCUACUGGCAAUAUGGCGGUUCCGGGUAAAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0039371 |
0.6975035 |
yrfF |
1255018 |
Intracellular growth attenuator protein igaA |
STM0399 |
-32 |
12 |
5 |
11 |
6.25 |
GcvB |
43 |
76 |
44 |
50 |
9.83 |
-15.64 |
-31.72 |
-1.51639 |
ACAACAUCACCAUCCACAGGCAGUAAGACUUUAUGACCCAUCAG&CUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGU |
((((((((((...((..((((...(((.........((((((((&)))))))))))...))))..))..)))))))))) |
GCCGCUUUAUAAUCCUCCGGGAAAGGCAAAAAUUUUAAUGUUUACAACAUCACCAUCCACAGGCAGUAAGACUUUAUGACCCAUCAGUUAAAAUCGCGCGAUAUCAUCGCCCUGGGCUUUAUGACAUUUGCGCUGUUCGUUGGCGCAGGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.006314 |
0.7419678 |
brnQ |
1251918 |
branched-chain amino acid transport system II carrier protein |
STM0069 |
-71 |
-52 |
-71 |
-65 |
3.48 |
GcvB |
60 |
81 |
75 |
81 |
6.88 |
-14.87 |
-25.23 |
-1.44174 |
ACAGCACAUGCGCAACCGUA&UACGGUUGUGAUGUUGUGUUGU |
((((((((..((((((((((&))))))))))....)))))))) |
GCCUACAGCACAUGCGCAACCGUAGACCGGAUAAGGUGUUUACGCCGCCAUCCGGCAAAAAACCGAGGUACAACUAUGAGCUAUUACGCCUUUGAAGGACUGAUCCCGGUGGUGCAUCCGGACGCGUUUGUCCACCCCAGCGCCGUGCUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0102821 |
0.7883581 |
caiE |
1251587 |
phenylacetic acid degradation protein PaaY |
STM4312 |
-24 |
24 |
-20 |
-14 |
11.29 |
GcvB |
53 |
90 |
80 |
86 |
9.63 |
-13.95 |
-34.87 |
-1.35254 |
GCUCACGCAACAAUUAAGCUGACUAUGGAUACACAACCGUCCGCCGAA&UUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGC |
((..(((((((((...(((.........((.(((((((((..((((((&))))))..))))))))))))))...)))))))))..)) |
GCGAUAAUAUCACUAACAUCAAUACACCGACCUUUAUCGGGUCGCUUAGAAGCUCACGCAACAAUUAAGCUGACUAUGGAUACACAACCGUCCGCCGAACCAACGUUGGGAUCGACUGUUAGCAGUCUGGAUAACACCGUCACCCUUAAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0178517 |
0.8311163 |
|
1255838 |
|
STM0532 |
-28 |
7 |
-7 |
-1 |
2.42 |
GcvB |
131 |
164 |
138 |
144 |
7.56 |
-14.18 |
-24.16 |
-1.37484 |
UGGACAACAAAUAGUAAAAGGAUAGGGAAUGAAAA&UUUUCACUUCCUGUACAUUUACCCUGUCUGUCCA |
(((((((((....(((((...(((((((.((((((&)))))).)))))))...)))))..))).)))))) |
GCGCUGGGGCACACCUCUGGUGCGGAUACGCUGCUGGGGUUCUGGCUUGGACAACAAAUAGUAAAAGGAUAGGGAAUGAAAACGUUGGUAGUUGCUCUUGGCGGCAACGCAUUAUUGCAGCGCGGAGAAGCGCUAACGGCAGAGAAUCAA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0155989 |
0.7979576 |
arcC |
1252052 |
putative carbamate kinase |
STM1787 |
-64 |
2 |
-37 |
-31 |
11.4 |
GcvB |
34 |
90 |
54 |
60 |
15.42 |
-16.39 |
-43.21 |
-1.58911 |
GUAAACGCCACAAACAACAGUUAGCGCAAGCCGAACAACAGCCGGACAAUGAGGAUAAACAGGCAU&AUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGC |
((((((((.((((((((((.....((.((((((((....((((.....((.((....((((.((((&)))).)))))).)).)))))))))))).)).......)))))).)))).)))))))) |
GCUCAACCAACGUAAACGCCACAAACAACAGUUAGCGCAAGCCGAACAACAGCCGGACAAUGAGGAUAAACAGGCAUGAGUAACCAGUAUCAAACCCAGGGUUAUACCGUUAACGACGCCGGCCGUCGUCUGAUCGUGGACCCGAUUACC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0038311 |
0.6975035 |
|
1253306 |
[Ni/Fe] hydrogenase large subunit |
STM2384 |
-30 |
-16 |
-22 |
-16 |
0.56 |
GcvB |
77 |
90 |
77 |
83 |
3.93 |
-14.64 |
-19.13 |
-1.41944 |
GCAAACGACAACAAC&GUUGUUGUGUUUGC |
((((((.((((((((&)))))))))))))) |
GCUCGCGGCCCGUGAACAUUUCAAUAUUUAUAAAGAUUAAAACACGCAAACGACAACAACGAUAACGGAGCCGUGAUGGCAGGAAACACAAUUGGACAACUCUUUCGCGUAACCACUUUCGGCGAAUCACACGGGCUGGCGCUUGGGUGU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0118389 |
0.7904009 |
aroC |
1253906 |
chorismate synthase |
STM0804 |
-70 |
-36 |
-55 |
-49 |
9.43 |
GcvB |
36 |
76 |
53 |
59 |
10.8 |
-14.05 |
-34.28 |
-1.36223 |
AUAUCAUUGCGCCGCAGCUGGAUGCCCGUACACGC&GCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGU |
(((.((((((.(((.(((((((.((((((((((((&))))))....)))))).)))))))..)))..)))))).))) |
GGAGAAUAUCAUUGCGCCGCAGCUGGAUGCCCGUACACGCCCAUGUAAUUUUCACCCUCAUUUAAAGAAAUAACGAUGUCGCAAUUAACCCAUAUAAACGCCGCAGGCGAAGCGCACAUGGUGGACGUUUCCGCGAAAGCGGAAACCGUU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0168389 |
0.8089837 |
moaC |
1252324 |
molybdenum cofactor biosynthesis protein C |
STM3984 |
-15 |
-3 |
-10 |
-4 |
0.93 |
GcvB |
148 |
161 |
149 |
155 |
1.2 |
-14.06 |
-16.19 |
-1.3632 |
ACAGAAGGGUAAA&UUUACCCUGUCUGU |
(((((((((((((&)))))))).))))) |
GGCAGAGAUCACGCUCUCGUGGGGCGAUGUGCUAAGAUGCGGGAACUUGAGGUCAAAAAAACAGAAGGGUAAAAAAUGGAAUCACUGGCCGCGCUCUAUAAAAAUCAUAUUGUUACCUUACAAGAACGGACGCGCGAUGUUCUGGCGCGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0167404 |
0.8089837 |
pepQ |
1255510 |
Xaa-Pro dipeptidase |
STM3574 |
-53 |
-35 |
-43 |
-37 |
7.7 |
GcvB |
150 |
169 |
152 |
158 |
2.39 |
-15.48 |
-25.57 |
-1.50088 |
CACUAUAACGGGCAGGGUA&UACCCUGUCUGUCCAUAGUG |
((((((.((((((((((((&))))))))))))..)))))) |
GGCCGUGACGGUCAGAUGACAACACUAUAACGGGCAGGGUAUGCUUAUUUCCGCAUUUUCUGACAGGUUAACAGUAUGAGUAAGCCACCGCUUUUCUUCAUUAUAAUCAUUGCAUUAAUCGUAGUUGCCGCGUCGUUCCGCUUCGUUCAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0070016 |
0.7528387 |
yhhM |
1255097 |
similar to E. coli putative receptor (AAC76492.1) Blastp hit to AAC76492.1 (119 aa) 84% identity in aa 1 - 116 |
STM1871 |
-72 |
-28 |
-46 |
-40 |
5.98 |
GcvB |
143 |
187 |
154 |
160 |
6.86 |
-14.41 |
-27.25 |
-1.39714 |
UGGCGAUACAGGACAGGAAAUUACAACGGACGGUGGAUCAGGUAC&GUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCA |
(((((.......(((...((((((.((((((((.((.....((((&)))).....)))))))))).....))))))..))).....))))) |
GGCUGGCGAUACAGGACAGGAAAUUACAACGGACGGUGGAUCAGGUACAACUUCAUAGCGCAAAACCACACGCCAGUGGCGCUUAUUGAAAAACUAAAAGGAACGGACUCAUUCACUGUGUCCGCAUGGAUUGAUCGCUAUGAGGUUUUA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0136032 |
0.7904009 |
|
1253392 |
putative phage integrase protein |
STM1538 |
-52 |
-14 |
-43 |
-37 |
3.31 |
GcvB |
51 |
90 |
75 |
81 |
10.1 |
-16.93 |
-30.34 |
-1.64147 |
GCAAUAAAAACAACACGUCAUCAGAAAACGCUCCGGAAG&CUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGC |
((((....((((((((..(((((.((..((..(((((((&)))))))....)).)).)))))..))))))))....)))) |
GGUGAGCGCCAUAAAACAUGCCCGCAAUAAAAACAACACGUCAUCAGAAAACGCUCCGGAAGAGAAAAAAUAAUUAUGGCAUAUCCUUAUCAGACUCAGGGUUUUACGCUGGACAAUAGCGGACGGCGAAUUGUGGUCGAUCCGGUUACU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0026303 |
0.659913 |
|
1253056 |
putative hydrogenase-1 large subunit |
STM1098 |
-69 |
-36 |
-51 |
-45 |
4.7 |
GcvB |
62 |
90 |
69 |
75 |
8.25 |
-18.25 |
-31.2 |
-1.76945 |
GCAUUUGCACAAUAACGACGACAUCAAUCAACUG&CGGUUGUGAUGUUGUGUUGUUGUGUUUGC |
(((....(((((((((.(((((((((..((((((&))))))))))))))))))))))))..))) |
GGUUUCGCAUUUGCACAAUAACGACGACAUCAAUCAACUGGAUAAGCUGCUGAAAUAACGCGGCAGGAGGUUCUCAUGCAAGUAGAUGAACAACGUCUGCGUUUUCGCGAUGCGAUGGCAAGUCUGGCGGCAGCGGUCAACAUCGUAACC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0009836 |
0.4343002 |
hpaC |
1252616 |
4-hydroxyphenylacetate 3-monooxygenase reductase component |
STM3089 |
56 |
73 |
67 |
73 |
1.87 |
GcvB |
157 |
174 |
157 |
163 |
3.11 |
-16.07 |
-21.05 |
-1.55809 |
UUAAUCAGUAUGGAUGGA&UCUGUCCAUAGUGAUUAA |
(((((((.((((((((((&)))))))))).))))))) |
GUAAAAAGGUGUUUUGCCAUAUUUAAUUUCACCUAAGGAGAAUUUAGUUAGCUCAAACUGUUGUGCGGAAUAGUCAUGACAGAAGAUUCUACCAUGAGUCUGAAGGUUGCUGACACUGGCAGUCUGAGUGUUAAUCAGUAUGGAUGGAUU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0047561 |
0.6975035 |
yqgD |
1254612 |
similar to E. coli orf hypothetical protein (AAC75978.1) Blastp hit to AAC75978.1 (83 aa) 52% identity in aa 1 - 78 |
STM3810 |
-30 |
-11 |
-21 |
-15 |
3.57 |
GcvB |
72 |
91 |
77 |
83 |
4.11 |
-14.7 |
-22.38 |
-1.42526 |
UGCAAAUAACGACAACCAAC&GUUGUGUUGUUGUGUUUGCA |
((((((((.(((((((((((&)))).))))))))))))))) |
GUACUGGUGAUGUUAUUUUUAGCAACGGAUCGCUAUAACUCAUCAUGCAAAUAACGACAACCAACAGAUGAAUGAGUGAUGAUAAAAAACGUGUGGUUAACGCUGAUAAUAUGGAAUGGGAUGCUUUUAUUAAGCGGUUGUUCAAGCGUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0114137 |
0.7904009 |
yidQ |
1255337 |
putative outer membrane lipoprotein |
STM0412 |
27 |
72 |
27 |
33 |
5.33 |
GcvB |
35 |
73 |
67 |
73 |
10.95 |
-14.92 |
-31.2 |
-1.44659 |
ACAUUACUUCCGGCGAUGCCACCAGCCUAAAAACAGACCUGUCGCA&UGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGU |
(((((((..((......((((..((((((....((((.....((((&))))...)))).))))))..))))....))..))))))) |
GUCGUGGGUUACAACUUCUAAACCUGCAAAAAAGGCCAGAGGUCGUCCUCUGGCCCGUUUCGGGCGCAUGCUGCCAUGCGGCGGCGAGUCGCGCCCACUUCACAUUACUUCCGGCGAUGCCACCAGCCUAAAAACAGACCUGUCGCAAUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.009969 |
0.7883581 |
|
2673775 |
putative inner membrane protein |
STM3600 |
-75 |
-47 |
-55 |
-49 |
1.65 |
GcvB |
155 |
182 |
157 |
163 |
6.06 |
-15.65 |
-23.36 |
-1.51736 |
GUGGAAUAUUAAUUACAUCAGGAUGGAUA&UGUCUGUCCAUAGUGAUUAAUGUAGCAC |
(((..(((((((((((....(((((((((&)))))))))...)))))))))))..))) |
GUGGAAUAUUAAUUACAUCAGGAUGGAUAAAAAAGCAGGGACGCUUUUUAUUGUAAAGACAAACAAGGAAUAAUGAUGAGCAUCAGCGUAUUGGGUAUUGGCGACAACGUUGUCGAUAAAUACCUGCAUUCCGGCAUCAUGUACCCCGGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0062731 |
0.7419678 |
|
1255123 |
fructoselysine 6-kinase |
STM1822 |
43 |
69 |
62 |
68 |
6.4 |
GcvB |
162 |
185 |
163 |
169 |
6.16 |
-14.36 |
-26.92 |
-1.39229 |
GUGGUGAUCUACAAUAAUACGCUGUGG&CCAUAGUGAUUAAUGUAGCACCGC |
((((((..(((((.((((.((((((((&)))))))))))).))))))))))) |
GUUACAGAGGUGACGGCGGCGCCACAUUGUGGCAGUCUUGAACCAUUCAAAUGAAAAGCAAAUGAGGAAUAAGUAAUGUCUAUCGUGCGUAUUGAUGCCGAAGAUCGUUGGUCAGACGUGGUGAUCUACAAUAAUACGCUGUGGUAUACC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0140165 |
0.7904009 |
yoaB |
1253341 |
similar to E. coli orf hypothetical protein (AAC74879.1) Blastp hit to AAC74879.1 (130 aa) 92% identity in aa 17 - 130 |
STM1743 |
-4 |
21 |
9 |
15 |
7.67 |
GcvB |
35 |
59 |
41 |
47 |
5.79 |
-18.01 |
-31.47 |
-1.74618 |
AGCCAUGAGCUUAUCAGAAACCGCA&UGCGUGUUCUGAUGGGCUUUUGGCU |
(((((..((((((((((((..((((&))))..))))))))))))..))))) |
GUUAUUCUGUUUUAACUUUAUUGGCGAUGGCCUGCGUGAUGCCCUCGACCCGAAAGAUCGUUAAGGAGUACAGCCAUGAGCUUAUCAGAAACCGCAACUCAGGCGCCGCAACCGGCGAAUGUACUGCUGGAGGUAAACGAUCUUCGUGUU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0011849 |
0.4343002 |
oppD |
1253262 |
oligopeptide ABC transporter ATP-binding protein OppD |
STM3344 |
-70 |
-27 |
-61 |
-55 |
11.46 |
GcvB |
48 |
102 |
83 |
89 |
15.57 |
-18.35 |
-45.38 |
-1.77915 |
CGCGGGCAACGAGCACAACCACGCGGCACAGCAACCGCAAGUUC&GGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCG |
(((((((..((((((((((.((((((((((.((((((.((((((&))))))........)))))))).)))))))).))))))))))......))))))) |
GUUUACGCGGGCAACGAGCACAACCACGCGGCACAGCAACCGCAAGUUCUUGACAUCUAAUCGGGAUUAUAGGCAAUGGCUGAAAAUCAAUACUACGGCACUGGUCGCCGCAAAAGUUCCGCAGCUCGCGUGUUCAUCAAACCGGGCAAC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0009093 |
0.4343002 |
rpsI |
1254867 |
30S ribosomal protein S9 |
STM2096 |
18 |
30 |
24 |
30 |
4.12 |
GcvB |
152 |
164 |
152 |
158 |
1.44 |
-14.39 |
-19.95 |
-1.3952 |
UGGUAAGACAGGG&CCCUGUCUGUCCA |
(((..((((((((&))))))))..))) |
UACUCAAUGGGUAAACAAUGUUAAAAGUGGGGCGUAUCAGAGUUGGAUAGAACAGAACUAUGAAGGACGCCAGUAAUGAAUAUCUUACUUUUUGGUAAGACAGGGCAAGUAGGCUGGGAGUUGCAACGUUCUCUGGCACCGGUAGGGAAU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0137672 |
0.7904009 |
rfbD |
1253617 |
dTDP-4-dehydrorhamnose reductase |
STM2179 |
-46 |
-27 |
-33 |
-27 |
2.39 |
GcvB |
69 |
90 |
69 |
75 |
6.4 |
-14.7 |
-23.49 |
-1.42526 |
GCAAACAUAAAAACAACAUC&GAUGUUGUGUUGUUGUGUUUGC |
((((((((((..((((((((&))))))))....)))))))))) |
UAUCGCUCACUCUACAAACUCGUAACAUAGCAAACAUAAAAACAACAUCUAUCUCCCUGCACUGAGGCAUUAGCUAUGACUCAACGACGUGAUCUACAAGCCCUUAUUGAUGCCGCGCCCGUCGGCAAAAUGCAGUGGCGCGUUAUCAUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0114137 |
0.7904009 |
|
1253701 |
4-hydroxybenzoate transporter |
STM1749 |
51 |
71 |
52 |
58 |
3.05 |
GcvB |
36 |
55 |
48 |
54 |
5.61 |
-15.39 |
-24.05 |
-1.49216 |
AAAAGCCCAGCGUGAAUAUGC&GCGUGUUCUGAUGGGCUUUU |
(((((((((....((((((((&))))))))...))))))))) |
UAUCGUCGAUCUGUCUAUACUCACGUAUCGCGCAGAUGAUUUACUAAAAAAGUUUAACAUUAUCAGGAGAGCAUUAUGGCUGUUACUAAUGUCGCUGAACUUAACGCACUCGUAGAGCGUGUAAAAAAAGCCCAGCGUGAAUAUGCCAGU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0074172 |
0.7711365 |
adhE |
1253268 |
bifunctional acetaldehyde-CoA/alcohol dehydrogenase |
STM3707 |
-35 |
-23 |
-34 |
-28 |
0.72 |
GcvB |
147 |
159 |
152 |
158 |
1.1 |
-17.94 |
-19.76 |
-1.73939 |
AGGCAGGGUAAAU&AUUUACCCUGUCU |
(((((((((((((&))))))))))))) |
UAUGGCGGCUUAAUAGUUUCUUAAUAGAGCCACAGUAUAAAGGCAGGGUAAAUUAAGGUUUUUCUGGUAAUCGUUAUGAAAAAUAGUAAAACCAAAGUGAGUAUCAUUGUCCCGUUAUAUAAUGCGGGAGCGGAUUUUAAUGCUUGCAUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0012502 |
0.4343002 |
yibD |
1255231 |
putative glycosyltransferase |
STM0516 |
31 |
40 |
32 |
38 |
3.24 |
GcvB |
154 |
163 |
156 |
162 |
1.28 |
-14.42 |
-18.94 |
-1.39811 |
GGACAGGCAG&CUGUCUGUCC |
((((((((((&)))))))))) |
UAUUGGCCUUCUUGCAUAAGAUGAACAUAUUGUUCAUUGUUUAUGCUCAUAUUUUGGGCCGGAGUUAACGUAAAUAUGACGGAAGUAAGACGACGCGGCAGGCCAGGACAGGCAGAGCCGACUGCGCAGAAAGGCGCUCAGGCGCUGGAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0135219 |
0.7904009 |
allR |
1252036 |
transcriptional regulator |
STM4558 |
-7 |
58 |
24 |
30 |
12.74 |
GcvB |
36 |
91 |
63 |
69 |
14.51 |
-14.84 |
-42.09 |
-1.43883 |
UGCGAACAUGAACACGAUUUCUAUCCUCAGCACGACCGAUCUCCCCGCAGCCUGGCAGAUUGAGC&GCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCA |
(((((((((((((((((..........((.((((((((.....((...((((...((((....((&))....))))...))))...))....)))))))).))))))))..))))))))))) |
UCACGACGCCGGCGUUUAAUGAACUCCGGGCAAACCCGGCGGCACGCGCCGCACUAUGGCAACAAAUCUGCGAACAUGAACACGAUUUCUAUCCUCAGCACGACCGAUCUCCCCGCAGCCUGGCAGAUUGAGCAACGCGCUCAUGCGUUU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0104742 |
0.7883581 |
rimI |
1256084 |
ribosomal-protein-alanine N-acetyltransferase |
STM4083 |
-40 |
-22 |
-40 |
-34 |
2.95 |
GcvB |
138 |
155 |
149 |
155 |
2.38 |
-13.8 |
-19.13 |
-1.33799 |
AGGGUAAACUGUAGCGGAA&UUCCUGUACAUUUACCCU |
((((((((.((((..((((&))))..)))))))))))) |
UCACGAUUAAAACGAUAACUGUCGGGCUUGUCAAAAGGGUAAACUGUAGCGGAAGGCAAAAUAUAAGGAACUUACAUGACCAUACAGCAAUGGUUAUUCUCAUUUAAAGGGCGUAUCGGACGCCGUGAUUUCUGGAUUUGGAUCGGCCUC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0194729 |
0.8669559 |
yiiR |
1255610 |
similar to E. coli orf hypothetical protein (AAC76903.1) Blastp hit to AAC76903.1 (146 aa) 90% identity in aa 1 - 141 |
STM1571 |
-69 |
-46 |
-53 |
-47 |
3 |
GcvB |
65 |
89 |
66 |
72 |
6.66 |
-15.24 |
-24.9 |
-1.47761 |
CAGUCACAAAGCAUGACAUCACAA&UUGUGAUGUUGUGUUGUUGUGUUUG |
((..((((((((((((((((((((&))))))))))))))).)))))..)) |
UCAGGACAGUCACAAAGCAUGACAUCACAAAAAGCAACGCUAAUAGGGCUUGUUGCCAUCGUUCUGUGGAGCACGAUGGUUGGGUUAAUUCGCGGCGUCAGCGAAGGUCUCGGACCGGUAGGCGGCGCAGCCAUGAUCUAUUCAUUAAGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0081593 |
0.7799855 |
yddG |
1253089 |
putative permease |
STM0900 |
-48 |
-8 |
-15 |
-9 |
13.44 |
GcvB |
36 |
81 |
37 |
43 |
10.87 |
-14.38 |
-38.69 |
-1.39423 |
ACAAUGCUGACCAUCACGCCAAAUUUUGCCCAGGAACGCGC&GCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGU |
(((((((....((((((((((((....(((((.((((((((&))))))))...))))).))))))........))))))..))))))) |
UCAUUAUCGCAUCGAUAUGGGGGCUGGACAAUGCUGACCAUCACGCCAAAUUUUGCCCAGGAACGCGCGCUGAACAUGCUGCGCCGCGACUGGAAGUCGCAUAAUACUUUUAUGGUGUAUGCACCCACUGGCAGCGGCAAAACGGGGUUA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0138499 |
0.7904009 |
|
1252419 |
putative Fels-1 prophage DNA or RNA helicases of superfamily II |
STM3786 |
27 |
38 |
30 |
36 |
0.47 |
GcvB |
178 |
189 |
180 |
186 |
2.94 |
-14.4 |
-17.81 |
-1.39617 |
UGUGGUGGUGUU&AGCACCGCCAUA |
((((((((((((&)))))))))))) |
UCCUGACAGGCCAGAACGUCGACAGUUAUAAAUUUACCGUUAUGAUGGGCAUCCUGUUUGGUGACGGAUGUGCGCAUGAUUUGGUUGAUUCUGGCCACGUUUGUGGUGGUGUUUAUUGUGGGGUUUCGGGUGCUGACAUCGGAUACCCGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.013685 |
0.7904009 |
yicN |
1255310 |
similar to E. coli orf hypothetical protein (AAC76686.1) Blastp hit to AAC76686.1 (159 aa) 82% identity in aa 10 - 159 |
STM3523 |
7 |
24 |
10 |
16 |
5.8 |
GcvB |
72 |
89 |
80 |
86 |
4.11 |
-15.15 |
-25.06 |
-1.46889 |
CAAACACAACGGCAUGAC&GUUGUGUUGUUGUGUUUG |
((((((((((((((((((&)))))))))))))))))) |
UCGAGAUAUUUUUCCAGGCCGGGUAGGGCGAAUGCCGCUAUCCGGCGCAAGGUUGGUUACUUUCAGAGAUUAUUCAUGAAACAAACACAACGGCAUGACGCGAUCAUUGAACUGGUAAAAAAACAGGGGUACGUCAGUACGGAAGAGCUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0086358 |
0.7799855 |
glpR |
1255046 |
DeoR/GlpR family transcriptional regulator |
STM0510 |
-35 |
-21 |
-32 |
-26 |
1.34 |
GcvB |
66 |
80 |
71 |
77 |
3.96 |
-16.54 |
-21.84 |
-1.60365 |
CGGCACAGCAUCACA&UGUGAUGUUGUGUUG |
(((((((((((((((&))))))))))))))) |
UCGUUUGGGCCAAAACAGACGAUGCCGCAUGAACGGCAUCCGGCACAGCAUCACACUAUUUAAAAUGGAGAAAUUAUGGGAUUGCGUCAGAGUUUACGCAUUGCGGCCAGCACGCUAUUACUGGCCUGCGGAUUACAGUUUGCCCAUGCC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.003456 |
0.6975035 |
sfbA |
1252030 |
metal ABC transporter substrate-binding protein |
STM4398 |
-30 |
6 |
-22 |
-16 |
2.15 |
GcvB |
125 |
169 |
153 |
159 |
9.4 |
-19.27 |
-30.82 |
-1.86835 |
CACAACACAGACAGGUACAGGAAGAAAAACAUGGUA&UACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUG |
(((...(((((((((((((((((((((((...((((&)))).))))))..)))))))).......))))))))).....))) |
UGAUAACAGGAUCGUCGUAUCAUAGACCAAAGGCCGUAGAGCCCGCACAACACAGACAGGUACAGGAAGAAAAACAUGGUAGAUCAGGUAAAAGUCGCAGCCGACGAACAGGCUCCGGCUGAACAGUCGCUACGGCGCAAUCUUACAAAC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.000428 |
0.3847632 |
cycA |
1255924 |
D-serine/D-alanine/glycine transporter |
STM0470 |
27 |
75 |
69 |
75 |
7.67 |
GcvB |
38 |
91 |
38 |
44 |
13.89 |
-14.3 |
-35.86 |
-1.38647 |
UGCAAAACAACGGCAUCCGGAUUGCCAGAUAGUCAAACGCAAAGGACGC&GUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCA |
(((((((((((((((.(((....((((((.((((........(((((((&)))))))....))))))))))...)))...........))))))))).)))))) |
UGAUAGCGAAAGUAGCGCCGCACGCUUCCAGAAACGUUUCGGUCAUUUUAUCGGCGCUAAACGGGGGUAAAUGAAAUGCAGGUGUUAAACUCACUUCGCAAUGCAAAACAACGGCAUCCGGAUUGCCAGAUAGUCAAACGCAAAGGACGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0145273 |
0.7904009 |
rpmJ2 |
1251990 |
50S ribosomal protein L36 |
STM2801 |
35 |
49 |
42 |
48 |
3.54 |
GcvB |
151 |
164 |
152 |
158 |
1.44 |
-15.18 |
-20.16 |
-1.47179 |
UGGAAAAGGCAGGGU&ACCCUGUCUGUCCA |
((((..(((((((((&))))))))).)))) |
UGGACUUUUCUGAAAGCGUUGAUAACGCGCUAUCGGGUAAGGUAAGCCCGCAGUACAAGAGAAUGAGGAUAAAAUAUGUAUUUACGACCUGACGAGGUGGCGCGGGUACUGGAAAAGGCAGGGUUUACCGUCGAUGUGGUGACGAAUAAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0084743 |
0.7799855 |
ygaC |
1254324 |
similar to E. coli orf hypothetical protein (AAC75718.1) Blastp hit to AAC75718.1 (114 aa) 88% identity in aa 1 - 112 |
STM3909 |
-34 |
-14 |
-24 |
-18 |
1.56 |
GcvB |
67 |
88 |
71 |
77 |
6.32 |
-21.24 |
-29.12 |
-2.05935 |
AAGCGCGACACACAACAUCAC&GUGAUGUUGUGUUGUUGUGUUU |
(((((((((((((((((((((&))))))))))).)))))))))) |
UGGGUUCAUUCGCACAGAUAGCAAUCUGUAAACCGAACAAUAAGCGCGACACACAACAUCACGGAGUACACCAUCAUGGCUAACUACUUUAAUACACUGAAUCUGCGCCAGCAGCUGGCGCAGUUGGGUAAAUGCCGCUUUAUGGGCCGC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
6.85e-05 |
0.2036716 |
ilvC |
1255435 |
ketol-acid reductoisomerase |
STM1287 |
4 |
34 |
28 |
34 |
7.83 |
GcvB |
47 |
79 |
47 |
53 |
9.82 |
-14.28 |
-31.93 |
-1.38453 |
AGCAUAGUAUUCAAUACCGUAGCCAAGCCCA&UGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUU |
((((((((((.((..((((((((((((((((&)))))))..))).))))))..)))))))))))) |
UGUUGCAAUGCUGGCUGAUAUCGCCCUGUCACGUCCCGCUUAUGCUAUACCCAUUCUUCACAGCGAGUAAGACGAAUGAGCAUAGUAUUCAAUACCGUAGCCAAGCCCAGCGGCAGUCUGUGUAACUUAUCCUGCAAGUACUGUUUCUAU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0147012 |
0.7904009 |
|
1252805 |
anaerobic sulfatase maturase |
STM0849 |
-26 |
-9 |
-22 |
-16 |
4.38 |
GcvB |
140 |
162 |
152 |
158 |
4.45 |
-17.84 |
-26.67 |
-1.7297 |
GACAGGCAGGGUUUCAGG&CCUGUACAUUUACCCUGUCUGUC |
((((((((((((..((((&)))).......)))))))))))) |
UGUUGCGCGGCCGCUGCAGGAUAAUGCGCUCUCGCGCUUAUAACAUUCAGACAGGCAGGGUUUCAGGAGAACAACAUGACGCAAUUUAUUACGCAUAAAUGGCUGGCGGCGCUGGGACUGGCCUCAUCCAUUGCGGCUUUUCCGGCCCUG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0013491 |
0.4351811 |
yliB |
1252368 |
glutathione ABC transporter substrate-binding protein GsiB |
STM0634 |
20 |
62 |
49 |
55 |
5.65 |
GcvB |
35 |
77 |
39 |
45 |
11 |
-16.39 |
-33.04 |
-1.58911 |
CAGAAAGACAACCGGCCGAUCAACACCUACAGGACAAACCGCA&UGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUG |
((.((..((((((((((((......(((((((((((...((((&))))))))))).))))...)))))...)))))))....)).)) |
UUAAAACCAACCCAUAAAUGCAAAAUAUACUAUUUCAUCUAUUAUUCAUAAUACGAAUGAAUUCGGAGCCAGAGCGUGAGUGAUAAUAAUCAGGCAGAAAGACAACCGGCCGAUCAACACCUACAGGACAAACCGCAAAUUUUCAGAACA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0038311 |
0.6975035 |
ybeF |
1252154 |
putative LysR family transcriptional regulator |
STM1107 |
4 |
61 |
6 |
12 |
17.59 |
GcvB |
36 |
82 |
74 |
80 |
10.87 |
-20.55 |
-49.01 |
-1.99245 |
AGCGACACAUCAUCUGCACUUCCGGAAAGCCCCGAGUCUGUCAGUUCGCACAACGCGC&GCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUU |
(((((((((.((((...((..(((..(((((...((((((((((.......(((((((&)))))))))))))))))...))))).)))..)))))).))))))))) |
UUAAGCCUGGCCCCGUAAGCGCAGCGCUACCGGGCAACCGUAGUACCCUACAAAAUUCCCAUCAGAGGAAAAAAAAUGAGCGACACAUCAUCUGCACUUCCGGAAAGCCCCGAGUCUGUCAGUUCGCACAACGCGCUCAGCACGGGUCAA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0001353 |
0.2036716 |
hpaX |
1252625 |
4-hydroxyphenylacetate permease |
STM1524 |
-72 |
-45 |
-52 |
-46 |
2.44 |
GcvB |
148 |
177 |
149 |
155 |
4.5 |
-15.64 |
-22.58 |
-1.51639 |
AUAUUAUUCAUUUUUCAGAAAGGGUAAA&UUUACCCUGUCUGUCCAUAGUGAUUAAUGU |
((((((.(((((...((((.((((((((&)))))))).)))).....))))).)))))) |
UUAAUAUUAUUCAUUUUUCAGAAAGGGUAAAGGGCGUCAUGAUGGUACAACUCCCCUGAUAACGAGAGAAAGAACAUGACCAUGAUGACUGCAACACAGGCGUUAUCCGUGAAUCCUGCGACCGGCCAGACGCUGGCGGCAAUGCCCUGG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.006314 |
0.7419678 |
yneI |
1253042 |
putative succinate-semialdehyde dehydrogenase |
STM3076 |
-22 |
13 |
-22 |
-16 |
5.91 |
GcvB |
35 |
75 |
69 |
75 |
10.97 |
-14.34 |
-31.22 |
-1.39035 |
CAACAUCCGAUCUGGAGUCAAAAUGUCCUCACGUA&UGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUG |
((((((((((((...((((((((.((((.((((((&)))))).......))))))))))))...))))).))))))) |
UUCCGGCGUAGCCCAAAACGCGCUGUCGUCAAGUCGUUACGGGCAUGGCCUUUCAACAUCCGAUCUGGAGUCAAAAUGUCCUCACGUAAAGAGCUUGCCAAUGCUAUUCGUGCGCUGAGCAUGGACGCAGUACAGAAAGCCAAGUCCGGU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0141849 |
0.7904009 |
tktA |
1254599 |
transketolase |
STM1576 |
4 |
30 |
4 |
10 |
5.35 |
GcvB |
61 |
86 |
80 |
86 |
7.74 |
-14.27 |
-27.36 |
-1.38356 |
ACACGACAAAACGAGAAUUAUAACCGU&ACGGUUGUGAUGUUGUGUUGUUGUGU |
(((((((((.((((..(((((((((((&))))))))))).)))).))))))))) |
UUCUCAAAAGAGCGCGUGACGCUCUGUCUCUUUUUUGUGUUUUUCUUCAAAUGAUAUGCGCAUGUGAGGGGUAAAAUGACACGACAAAACGAGAAUUAUAACCGUUAUCUCUUGAGUGACUGGCGACCCGAAAAUCCAGCCUUCUGGGAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0147888 |
0.7904009 |
narU |
1253094 |
nitrate/nitrite transporter NarU |
STM2573 |
-66 |
-17 |
-37 |
-31 |
7.72 |
GcvB |
42 |
84 |
53 |
59 |
12.2 |
-13.97 |
-33.89 |
-1.35448 |
AUAACGAAAAAAUAUGUCGCAACGGUUUUAGCCAAAAUUCAUUAAUCAGA&UCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGU |
(((((((......((((((((((.((...((((((((.......((((((&))))))....)))))))).)).))))))))))....))))))) |
UUGACCCUGAUAACGAAAAAAUAUGUCGCAACGGUUUUAGCCAAAAUUCAUUAAUCAGAUAAUAAGGAAAUAAAAAUGAAAAUUGCAAUCGCAGGUGCAGGCGCUAUGGGAUGUCGUUUUGGCUAUAUGCUGCUGGAGGCCGGGCACGAC |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0176449 |
0.8300455 |
|
1254095 |
2-dehydropantoate 2-reductase |
STM3564 |
-44 |
-17 |
-25 |
-19 |
1.58 |
GcvB |
65 |
90 |
67 |
73 |
6.67 |
-14.37 |
-22.62 |
-1.39326 |
GCAAAAAACAAAACAUAUAACAUCACGA&UUGUGAUGUUGUGUUGUUGUGUUUGC |
((((...(((.(((((((((((((((((&)))))))))))))).))).))))))) |
UUUAUAAAAAGUACAGUCUGCUUUUUAACCAGCAAAAAACAAAACAUAUAACAUCACGAAUGGGGAUACAGGCACAUGAAACGGAAAGCGAAAACAAUAAUCGCAGGGAUUGUUGCAUUAGCAGUCUCGCAGGGGGCAAUGGCAGAUGAU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.013933 |
0.7904009 |
livK |
1255087 |
leucine ABC transporter subunit substrate-binding protein LivK |
STM2909 |
41 |
74 |
68 |
74 |
7.52 |
GcvB |
47 |
83 |
47 |
53 |
11.67 |
-16.31 |
-35.5 |
-1.58135 |
CGAUGAUGCAGCAGUAUCUCAAGCUGAAAGCCCA&UGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUG |
(((((((((((((..(((..((((((((((((((&))))))))))))))..))).....))))))))))))) |
UUUAUGUGAGUUUAUAAGGGUUUUACCUGGGGCCACAUGAGCACUUGAAAGAAUAAAAAAACGAGUAAAAUCAAUAUGAAUGAGUCAUUUGAUAAGGACUUCUCCAACCACACCCCGAUGAUGCAGCAGUAUCUCAAGCUGAAAGCCCAG |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0040457 |
0.6975035 |
mutS |
1254432 |
DNA mismatch repair protein MutS |
STM2925 |
58 |
74 |
59 |
65 |
5.88 |
GcvB |
153 |
170 |
163 |
169 |
2.49 |
-14.45 |
-22.82 |
-1.40102 |
UCACUAUGGCUGGCAGG&CCUGUCUGUCCAUAGUGA |
(((((((((..((((((&))))))...))))))))) |
UUUCCCGUGUUCACUUAAUGCGUUGCACGGUUCUUACGUCACUGGUUGUUAACCAAAUUUUUUCCUGGGGGAUAAAUGAGCGCGGGAAGCCCAAAAUUCACCGUUAGUCGCAUUGCGGCACUAUCACUGGUUUCACUAUGGCUGGCAGGU |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0132805 |
0.7904009 |
nlpD |
1254448 |
lipoprotein NlpD |
STM1129 |
-11 |
38 |
28 |
34 |
12.17 |
GcvB |
139 |
186 |
143 |
149 |
8.7 |
-15.3 |
-36.17 |
-1.48343 |
GGCGGAACUGGAUGUCACUAUUAGCCAGGCUGGAACAAAGUGUACACGA&UCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCC |
(((((..((..((.(((((((....(((((.((....(((((((((.((&)).)))))))))..)).)))))...)))))))...))..))..))))) |
UUUUGCUUGAUGUAGCAACACUCCAAGACAUAACAUAAAACGGAGCAAAACUUCAAAUAUAUAAGGCGGAACUGGAUGUCACUAUUAGCCAGGCUGGAACAAAGUGUACACGAAAACGGUGGGCUGAUUGUCUCAUGCCAACCGGUACCA |
ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGAUGGGCUUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGCGAUUCAGACCACGGUAGCGAGACUACCCUUUUUCACUUCCUGUACAUUUACCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCAUAUUGCGGUGCUUU |
0.0078548 |
0.7711365 |
|
1252647 |
N-acetylmannosamine-6-phosphate 2-epimerase |