71 |
0.01891 |
0.6733 |
lmo2349 |
N/A |
-17.22 |
0.037183 |
66 -- 119 |
160 -- 206 |
amino acid ABC transporter substrate-binding protein |
|
_____________65______________________________________________________________________________________________________________________120\n_____________|_______________________________________________________________________________________________________________________|\n5'-ACC...GCACU___A_______CUUCUGCCAGA___________UG_______GA_____A__U__________________UU_______C__UUUU_A_______GA_G___________U_______UUAUG...AAG-3'\n______________GAC_CUUGGAA___________AAACA__UCCA__GUUGCUG__UAUGU_UC__GCGCC________GCGG__AUGAGGU_UA____G_ACAUGAG__A_ACGGC____GA_GUGGGUG\n______________|||_||:|:||___________|||||__||||__|||||::__:||||_||__|||||________:|||__||||||:_||____|_||||||:__|_|||||____||_:||::||\n______________CUG_GAGCUUU___________UUUGU__AGGU__CAACGGU__GUACA_AG__CGCGG________UGCC__UACUCCG_AU____C_UGUACUU__U_UGCCG____CU_UACUUAC\n___3'-GUUUUUUU___C_______A_______________AA____CG_______A_________CC_____AUACGUAU____C________U_______________GA_G_____GUUA__C_______UUUUG...GGA-5'\n_____________|_______________________________________________________________________________________________________________________|\n_____________207_____________________________________________________________________________________________________________________159\n |
107 -- 113 |
161 -- 167 |
-71.8793 kcal/mol |
29.0166 kcal/mol |
34.5254 kcal/mol |
65 120@LB@ | |@LB@5'-ACC...GCACU A CUUCUGCCAGA UG GA A U UU C UUUU A GA G U UUAUG...AAG-3'@LB@ GAC CUUGGAA AAACA UCCA GUUGCUG UAUGU UC GCGCC GCGG AUGAGGU UA G ACAUGAG A ACGGC GA GUGGGUG@LB@ ||| ||:|:|| ||||| |||| |||||:: :|||| || ||||| :||| ||||||: || | ||||||: | ||||| || :||::||@LB@ CUG GAGCUUU UUUGU AGGU CAACGGU GUACA AG CGCGG UGCC UACUCCG AU C UGUACUU U UGCCG CU UACUUAC@LB@ 3'-GUUUUUUU C A AA CG A CC AUACGUAU C U GA G GUUA C UUUUG...GGA-5'@LB@ | |@LB@ 207 159@LB@@LB@@LB@Energy -17.22 kcal/mol@LB@Hybridization Energy -71.8793 kcal/mol@LB@Unfolding Energy - mRNA 29.0166 kcal/mol@LB@Unfolding Energy - sRNA 34.5254 kcal/mol@LB@@LB@Position - mRNA 66 -- 119@LB@Position - sRNA 160 -- 206@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 161 -- 167@LB@ |
72 |
0.01905 |
0.6733 |
lmo2074 |
N/A |
-18.09 |
0.024896 |
131 -- 158 |
147 -- 174 |
|
|
_____________130___________________159\n_____________|_____________________|\n5'-AUG...GAAAU________A____________AUAAG...CGC-3'\n______________UAAUG_GA_GAAUGGGAACAA\n______________:||||_||_|||||::|||||\n______________GUUAC_CU_CUUACUUUUGUU\n3'-GUU...UGCCG_____U__A____________UAUUA...GGA-5'\n_____________|_____________________|\n_____________175___________________146\n |
144 -- 150 |
154 -- 160 |
-16.7779 kcal/mol |
1.50572 kcal/mol |
0.962339 kcal/mol |
130 159@LB@ | |@LB@5'-AUG...GAAAU A AUAAG...CGC-3'@LB@ UAAUG GA GAAUGGGAACAA@LB@ :|||| || |||||::|||||@LB@ GUUAC CU CUUACUUUUGUU@LB@3'-GUU...UGCCG U A UAUUA...GGA-5'@LB@ | |@LB@ 175 146@LB@@LB@@LB@Energy -18.09 kcal/mol@LB@Hybridization Energy -16.7779 kcal/mol@LB@Unfolding Energy - mRNA 1.50572 kcal/mol@LB@Unfolding Energy - sRNA 0.962339 kcal/mol@LB@@LB@Position - mRNA 131 -- 158@LB@Position - sRNA 147 -- 174@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 154 -- 160@LB@ |
73 |
0.0193 |
0.6733 |
lmo0405 |
N/A |
-18.50 |
0.020574 |
154 -- 209 |
155 -- 199 |
phosphate transporter |
|
_____________153____________210\n_____________|______________|\n5'-GUG...UUAUG________U_____UACGA...CGA-3'\n______________AUGACGGG_AUGAG\n______________||:|||||_|||||\n______________UAUUGCCC_UACUC\n3'-GUU...AUACG______________CGUAU...GGA-5'\n_____________|______________|\n_____________200____________154\n |
50 -- 56 |
202 -- 208 |
-16.311 kcal/mol |
2.72131 kcal/mol |
0.386761 kcal/mol |
153 210@LB@ | |@LB@5'-GUG...UUAUG U UACGA...CGA-3'@LB@ AUGACGGG AUGAG@LB@ ||:||||| |||||@LB@ UAUUGCCC UACUC@LB@3'-GUU...AUACG CGUAU...GGA-5'@LB@ | |@LB@ 200 154@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -16.311 kcal/mol@LB@Unfolding Energy - mRNA 2.72131 kcal/mol@LB@Unfolding Energy - sRNA 0.386761 kcal/mol@LB@@LB@Position - mRNA 154 -- 209@LB@Position - sRNA 155 -- 199@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 202 -- 208@LB@ |
74 |
0.01955 |
0.6733 |
lmo0190 |
ipk |
-17.49 |
0.032930 |
174 -- 210 |
154 -- 192 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
|
_____________173_______________________________________211\n_____________|_________________________________________|\n5'-AUA...AAAAG____UU_________GA___________AA___________GCAUU...CAA-3'\n______________AGAU__UGAAC_GCG__GGCCA___AGA__AAUGAAAAUAA\n______________|||:__|||||_:|:__|||||___|||__||||||||:||\n______________UCUG__ACUUG_UGU__CCGGU___UCU__UUACUUUUGUU\n3'-GUU...CCGUA____U______A___G______UAC___AC___________UAUUA...GGA-5'\n_____________|_________________________________________|\n_____________193_______________________________________153\n |
204 -- 210 |
154 -- 160 |
-28.6344 kcal/mol |
5.15958 kcal/mol |
12.1365 kcal/mol |
173 211@LB@ | |@LB@5'-AUA...AAAAG UU GA AA GCAUU...CAA-3'@LB@ AGAU UGAAC GCG GGCCA AGA AAUGAAAAUAA@LB@ |||: ||||| :|: ||||| ||| ||||||||:||@LB@ UCUG ACUUG UGU CCGGU UCU UUACUUUUGUU@LB@3'-GUU...CCGUA U A G UAC AC UAUUA...GGA-5'@LB@ | |@LB@ 193 153@LB@@LB@@LB@Energy -17.49 kcal/mol@LB@Hybridization Energy -28.6344 kcal/mol@LB@Unfolding Energy - mRNA 5.15958 kcal/mol@LB@Unfolding Energy - sRNA 12.1365 kcal/mol@LB@@LB@Position - mRNA 174 -- 210@LB@Position - sRNA 154 -- 192@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 154 -- 160@LB@ |
75 |
0.01961 |
0.6733 |
lmo0383 |
N/A |
-20.23 |
0.008871 |
224 -- 265 |
150 -- 186 |
methylmalonate-semialdehyde dehydrogenase |
|
_____________223________________________________________266\n_____________|__________________________________________|\n5'-UUC...UUAAA_______AUUG_____G______UC___A_U___________AUAUG...AAG-3'\n______________GAAUUAU____ACGGC_AAUGGG__GAG_G_AAGACAGAUAA\n______________|||:||:____|||||_||||:|__||:_|_||:|||:||||\n______________CUUGAUG____UGCCG_UUACUC__CUU_C_UUUUGUUUAUU\n3'-GUU...CUGUA________________G______UA___A_____________ACUAA...GGA-5'\n_____________|__________________________________________|\n_____________187________________________________________149\n |
257 -- 263 |
152 -- 158 |
-34.2826 kcal/mol |
8.25616 kcal/mol |
13.66 kcal/mol |
223 266@LB@ | |@LB@5'-UUC...UUAAA AUUG G UC A U AUAUG...AAG-3'@LB@ GAAUUAU ACGGC AAUGGG GAG G AAGACAGAUAA@LB@ |||:||: ||||| ||||:| ||: | ||:|||:||||@LB@ CUUGAUG UGCCG UUACUC CUU C UUUUGUUUAUU@LB@3'-GUU...CUGUA G UA A ACUAA...GGA-5'@LB@ | |@LB@ 187 149@LB@@LB@@LB@Energy -20.23 kcal/mol@LB@Hybridization Energy -34.2826 kcal/mol@LB@Unfolding Energy - mRNA 8.25616 kcal/mol@LB@Unfolding Energy - sRNA 13.66 kcal/mol@LB@@LB@Position - mRNA 224 -- 265@LB@Position - sRNA 150 -- 186@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 152 -- 158@LB@ |
76 |
0.01998 |
0.6733 |
lmo1751 |
N/A |
-17.90 |
0.027246 |
260 -- 292 |
176 -- 211 |
Uncharacterized RNA methyltransferase lmo1751 |
|
_____________259______________293\n_____________|________________|\n5'-GAA...GGCAA____CUU_________UCCCU...CAU-3'\n______________GGGA____UGGAAGCA\n______________|:||____||:||:||\n______________CUCU____ACUUUUGU\n3'-GUU...GGUUA____ACUU________UUAUU...GGA-5'\n_____________|________________|\n_____________212______________175\n |
203 -- 209 |
155 -- 161 |
-10.7582 kcal/mol |
2.48877 kcal/mol |
0.929544 kcal/mol |
259 293@LB@ | |@LB@5'-GAA...GGCAA CUU UCCCU...CAU-3'@LB@ GGGA UGGAAGCA@LB@ |:|| ||:||:||@LB@ CUCU ACUUUUGU@LB@3'-GUU...GGUUA ACUU UUAUU...GGA-5'@LB@ | |@LB@ 212 175@LB@@LB@@LB@Energy -17.90 kcal/mol@LB@Hybridization Energy -10.7582 kcal/mol@LB@Unfolding Energy - mRNA 2.48877 kcal/mol@LB@Unfolding Energy - sRNA 0.929544 kcal/mol@LB@@LB@Position - mRNA 260 -- 292@LB@Position - sRNA 176 -- 211@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 155 -- 161@LB@ |
77 |
0.02006 |
0.6733 |
lmo1400 |
N/A |
-17.16 |
0.038248 |
136 -- 215 |
157 -- 223 |
N-acetyltransferase |
|
_____________135_____________216\n_____________|_______________|\n5'-AAA...GUUUU_______________AUUUU...AAG-3'\n______________UGAG_UGAGUGGAAA\n______________||||_|||:||:|||\n______________ACUC_ACUUACUUUU\n3'-GUU...CGGUU____U__________GUUUA...GGA-5'\n_____________|_______________|\n_____________224_____________156\n |
209 -- 215 |
157 -- 163 |
-14.2437 kcal/mol |
2.95971 kcal/mol |
0.905109 kcal/mol |
135 216@LB@ | |@LB@5'-AAA...GUUUU AUUUU...AAG-3'@LB@ UGAG UGAGUGGAAA@LB@ |||| |||:||:|||@LB@ ACUC ACUUACUUUU@LB@3'-GUU...CGGUU U GUUUA...GGA-5'@LB@ | |@LB@ 224 156@LB@@LB@@LB@Energy -17.16 kcal/mol@LB@Hybridization Energy -14.2437 kcal/mol@LB@Unfolding Energy - mRNA 2.95971 kcal/mol@LB@Unfolding Energy - sRNA 0.905109 kcal/mol@LB@@LB@Position - mRNA 136 -- 215@LB@Position - sRNA 157 -- 223@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 157 -- 163@LB@ |
78 |
0.02097 |
0.6733 |
lmo1196 |
N/A |
-18.80 |
0.017871 |
157 -- 213 |
158 -- 203 |
cobalt-precorrin-6Y C(15)-methyltransferase |
|
_____________156_________________________________________________________214\n_____________|___________________________________________________________|\n5'-CCU...AACCA____AA___GCAAAAAAAUAC_________GUAG____G_U__U_______AGA_____UAUUU...AAA-3'\n______________GAGG__GUA____________GAUAUGAAU____UGGU_A_UG_AGAUGAA___UGAAG\n______________||||__:||____________||:|||||:____:||:_|_||_|||||||___||||:\n______________CUCC__UAU____________CUGUACUUG____GCCG_U_AC_UCUACUU___ACUUU\n3'-GUU...CCCUA____G_________________________AUGU____G_U__________________UGUUU...GGA-5'\n_____________|___________________________________________________________|\n_____________204_________________________________________________________157\n |
199 -- 205 |
163 -- 169 |
-30.6214 kcal/mol |
5.96601 kcal/mol |
13.8965 kcal/mol |
156 214@LB@ | |@LB@5'-CCU...AACCA AA GCAAAAAAAUAC GUAG G U U AGA UAUUU...AAA-3'@LB@ GAGG GUA GAUAUGAAU UGGU A UG AGAUGAA UGAAG@LB@ |||| :|| ||:|||||: :||: | || ||||||| ||||:@LB@ CUCC UAU CUGUACUUG GCCG U AC UCUACUU ACUUU@LB@3'-GUU...CCCUA G AUGU G U UGUUU...GGA-5'@LB@ | |@LB@ 204 157@LB@@LB@@LB@Energy -18.80 kcal/mol@LB@Hybridization Energy -30.6214 kcal/mol@LB@Unfolding Energy - mRNA 5.96601 kcal/mol@LB@Unfolding Energy - sRNA 13.8965 kcal/mol@LB@@LB@Position - mRNA 157 -- 213@LB@Position - sRNA 158 -- 203@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
79 |
0.02126 |
0.6733 |
lmo1172 |
N/A |
-17.83 |
0.028138 |
200 -- 242 |
163 -- 210 |
two-component response regulator |
|
_____________199_________243\n_____________|___________|\n5'-CAC...CAGGA___________AAUUG...UAG-3'\n______________AUGAAUGGAAG\n______________|||||||:||:\n______________UACUUACUUUU\n3'-GUU...UACUC___________GUUUA...GGA-5'\n_____________|___________|\n_____________211_________162\n |
214 -- 220 |
157 -- 163 |
-10.013 kcal/mol |
1.15656 kcal/mol |
0.82573 kcal/mol |
199 243@LB@ | |@LB@5'-CAC...CAGGA AAUUG...UAG-3'@LB@ AUGAAUGGAAG@LB@ |||||||:||:@LB@ UACUUACUUUU@LB@3'-GUU...UACUC GUUUA...GGA-5'@LB@ | |@LB@ 211 162@LB@@LB@@LB@Energy -17.83 kcal/mol@LB@Hybridization Energy -10.013 kcal/mol@LB@Unfolding Energy - mRNA 1.15656 kcal/mol@LB@Unfolding Energy - sRNA 0.82573 kcal/mol@LB@@LB@Position - mRNA 200 -- 242@LB@Position - sRNA 163 -- 210@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 157 -- 163@LB@ |
80 |
0.02141 |
0.6733 |
lmo1147 |
N/A |
-19.90 |
0.010431 |
143 -- 214 |
146 -- 207 |
cobalamin biosynthesis protein CopB |
|
_____________142____________________________________________________________________215\n_____________|______________________________________________________________________|\n5'-UAU...AUUUG_______AUUUUUA________A____AUC____UGU_______A_______GAAUGGAC__________UGAUG...CAA-3'\n______________AGCGGGA_______GGGGC_UA_ACGU___GGAU___UACGCGG__AAUGAG________AUGAGUGAAA\n______________|:|||||_______|:|||_||_||:|___|:|:___|||:|||__||||||________||||:|||||\n______________UUGCCCU_______CUCCG_AU_UGUA___CUUG___AUGUGCC__UUACUC________UACUUACUUU\n3'-GUU...ACGUA_______A___________U__C_____________________GG________________________UGUUU...GGA-5'\n_____________|______________________________________________________________________|\n_____________208____________________________________________________________________145\n |
204 -- 210 |
158 -- 164 |
-42.8674 kcal/mol |
12.3523 kcal/mol |
18.5828 kcal/mol |
142 215@LB@ | |@LB@5'-UAU...AUUUG AUUUUUA A AUC UGU A GAAUGGAC UGAUG...CAA-3'@LB@ AGCGGGA GGGGC UA ACGU GGAU UACGCGG AAUGAG AUGAGUGAAA@LB@ |:||||| |:||| || ||:| |:|: |||:||| |||||| ||||:|||||@LB@ UUGCCCU CUCCG AU UGUA CUUG AUGUGCC UUACUC UACUUACUUU@LB@3'-GUU...ACGUA A U C GG UGUUU...GGA-5'@LB@ | |@LB@ 208 145@LB@@LB@@LB@Energy -19.90 kcal/mol@LB@Hybridization Energy -42.8674 kcal/mol@LB@Unfolding Energy - mRNA 12.3523 kcal/mol@LB@Unfolding Energy - sRNA 18.5828 kcal/mol@LB@@LB@Position - mRNA 143 -- 214@LB@Position - sRNA 146 -- 207@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 158 -- 164@LB@ |