| 112 |
0.003634 |
0.1131 |
b1473 |
yddG |
-8.08 |
0.286569 |
177 -- 226 |
24 -- 55 |
aromatic amino acid exporter |
|
_____________176________________________________________________227\n_____________|__________________________________________________|\n5'-GCG...UUAAC__C___A_______AACA_C____AUGACACGACAAAAA___________AGGGC...CGG-3'\n______________GG_AAG_GAGACAA____G_GAGC_______________GCAACGCUCAU\n______________||_|||_:||||||____|_||||_______________|||||||:|||\n______________CC_UUC_UUCUGUU____C_CUCG_______________CGUUGCGGGUA\n3'-UUU...UUUUU______A_______AUA_________________________________GCGAA...ACG-5'\n_____________|__________________________________________________|\n_____________56_________________________________________________23\n |
216 -- 222 |
28 -- 34 |
-30.4707 kcal/mol |
9.38627 kcal/mol |
13.0079 kcal/mol |
176 227@LB@ | |@LB@5'-GCG...UUAAC C A AACA C AUGACACGACAAAAA AGGGC...CGG-3'@LB@ GG AAG GAGACAA G GAGC GCAACGCUCAU@LB@ || ||| :|||||| | |||| |||||||:|||@LB@ CC UUC UUCUGUU C CUCG CGUUGCGGGUA@LB@3'-UUU...UUUUU A AUA GCGAA...ACG-5'@LB@ | |@LB@ 56 23@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -30.4707 kcal/mol@LB@Unfolding Energy - mRNA 9.38627 kcal/mol@LB@Unfolding Energy - sRNA 13.0079 kcal/mol@LB@@LB@Position - mRNA 177 -- 226@LB@Position - sRNA 24 -- 55@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 104 |
0.00334 |
0.1114 |
b1923 |
fliC |
-7.97 |
0.300066 |
194 -- 205 |
75 -- 89 |
flagellar filament structural protein (flagellin) |
|
_____________193_____________206\n_____________|_______________|\n5'-GUU...GGAUA_______________ACAAG...CUU-3'\n______________ACGAAUCA__UG_GC\n______________||||||||__||_||\n______________UGCUUAGU__AC_CG\n3'-UUU...CAGCA________UA__A__AUACG...ACG-5'\n_____________|_______________|\n_____________90______________74\n |
195 -- 201 |
82 -- 88 |
-12.363 kcal/mol |
2.14901 kcal/mol |
2.24483 kcal/mol |
193 206@LB@ | |@LB@5'-GUU...GGAUA ACAAG...CUU-3'@LB@ ACGAAUCA UG GC@LB@ |||||||| || ||@LB@ UGCUUAGU AC CG@LB@3'-UUU...CAGCA UA A AUACG...ACG-5'@LB@ | |@LB@ 90 74@LB@@LB@@LB@Energy -7.97 kcal/mol@LB@Hybridization Energy -12.363 kcal/mol@LB@Unfolding Energy - mRNA 2.14901 kcal/mol@LB@Unfolding Energy - sRNA 2.24483 kcal/mol@LB@@LB@Position - mRNA 194 -- 205@LB@Position - sRNA 75 -- 89@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 117 |
0.00395 |
0.1189 |
b3447 |
ggt |
-7.92 |
0.307079 |
7 -- 34 |
69 -- 94 |
gamma-glutamyltranspeptidase |
|
_____________6____________________________35\n_____________|____________________________|\n_____5'-GUUAGG_____UCA____AUUAA__G________AAGCC...CGU-3'\n______________GUUGU___GAGU_____UG_GCUGUGCA\n______________||:||___||:|_____||_|||:||||\n______________CAGCA___CUUA_____AC_CGAUACGU\n3'-UUU...AGCCG_____UG_____GUUA___A________CAUUA...ACG-5'\n_____________|____________________________|\n_____________95___________________________68\n |
28 -- 34 |
69 -- 75 |
-19.4914 kcal/mol |
6.89072 kcal/mol |
4.68367 kcal/mol |
6 35@LB@ | |@LB@ 5'-GUUAGG UCA AUUAA G AAGCC...CGU-3'@LB@ GUUGU GAGU UG GCUGUGCA@LB@ ||:|| ||:| || |||:||||@LB@ CAGCA CUUA AC CGAUACGU@LB@3'-UUU...AGCCG UG GUUA A CAUUA...ACG-5'@LB@ | |@LB@ 95 68@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -19.4914 kcal/mol@LB@Unfolding Energy - mRNA 6.89072 kcal/mol@LB@Unfolding Energy - sRNA 4.68367 kcal/mol@LB@@LB@Position - mRNA 7 -- 34@LB@Position - sRNA 69 -- 94@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 108 |
0.003432 |
0.1114 |
b3159 |
yhbV |
-7.84 |
0.318675 |
148 -- 178 |
4 -- 39 |
U32 peptidase family protein |
|
_____________147___________________________________179\n_____________|_____________________________________|\n5'-GUG...CCGAA__CA_____A_______U_____________A_____GUAAA...AUC-3'\n______________GG__CGCAA___CCA_C_CUUGGCG___CAU_UCACC\n______________||__|||||___|||_|_||||:||___|||_|||||\n______________CC__GCGUU___GGU_G_GAACUGC___GUA_AGUGG\n3'-UUU...UUAUA__UC_____GCG___A_C_______AAC_________ACG-5'\n_____________|_____________________________________|\n_____________40____________________________________3\n |
163 -- 169 |
15 -- 21 |
-29.1995 kcal/mol |
6.07879 kcal/mol |
15.29 kcal/mol |
147 179@LB@ | |@LB@5'-GUG...CCGAA CA A U A GUAAA...AUC-3'@LB@ GG CGCAA CCA C CUUGGCG CAU UCACC@LB@ || ||||| ||| | ||||:|| ||| |||||@LB@ CC GCGUU GGU G GAACUGC GUA AGUGG@LB@3'-UUU...UUAUA UC GCG A C AAC ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -29.1995 kcal/mol@LB@Unfolding Energy - mRNA 6.07879 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 148 -- 178@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 154 |
0.005979 |
0.1368 |
b4136 |
dsbD |
-7.81 |
0.321864 |
41 -- 58 |
35 -- 56 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________40______________________59\n_____________|_______________________|\n5'-UGC...UUACU___A___________________AAGAA...CGG-3'\n______________GGG_AGGUAAG_C____UGGAGC\n______________:||_|:|||||_|____||||||\n______________UCC_UUCAUUC_G____ACCUCG\n3'-UUU...UUUUU___________U_UUAU______CGUUG...ACG-5'\n_____________|_______________________|\n_____________57______________________34\n |
45 -- 51 |
47 -- 53 |
-17.7247 kcal/mol |
5.71782 kcal/mol |
4.15888 kcal/mol |
40 59@LB@ | |@LB@5'-UGC...UUACU A AAGAA...CGG-3'@LB@ GGG AGGUAAG C UGGAGC@LB@ :|| |:||||| | ||||||@LB@ UCC UUCAUUC G ACCUCG@LB@3'-UUU...UUUUU U UUAU CGUUG...ACG-5'@LB@ | |@LB@ 57 34@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -17.7247 kcal/mol@LB@Unfolding Energy - mRNA 5.71782 kcal/mol@LB@Unfolding Energy - sRNA 4.15888 kcal/mol@LB@@LB@Position - mRNA 41 -- 58@LB@Position - sRNA 35 -- 56@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 140 |
0.005308 |
0.1336 |
b0055 |
djlA |
-7.67 |
0.341620 |
49 -- 94 |
41 -- 89 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________48_________________________________________________95\n_____________|__________________________________________________|\n5'-GAC...GAAUA__________G______G___C_GC___G__U__C_______U_______CAAAU...UUG-3'\n______________GCG__UCAGU_GUGUUA_GCA_G__AUU_AA_GA___AGGUA_GAUAAUG\n______________:||__|||:|_|||:||_|||_|__|||_||_:|___|:|||_||:|||:\n______________UGC__AGUUA_CACGAU_CGU_C__UAA_UU_UU___UUCAU_CUGUUAU\n3'-UUU...CAGCA___UU_____A______A_____AU___G__U__UCC_____U_______ACCUC...ACG-5'\n_____________|__________________________________________________|\n_____________90_________________________________________________40\n |
88 -- 94 |
41 -- 47 |
-26.3807 kcal/mol |
12.8315 kcal/mol |
5.88014 kcal/mol |
48 95@LB@ | |@LB@5'-GAC...GAAUA G G C GC G U C U CAAAU...UUG-3'@LB@ GCG UCAGU GUGUUA GCA G AUU AA GA AGGUA GAUAAUG@LB@ :|| |||:| |||:|| ||| | ||| || :| |:||| ||:|||:@LB@ UGC AGUUA CACGAU CGU C UAA UU UU UUCAU CUGUUAU@LB@3'-UUU...CAGCA UU A A AU G U UCC U ACCUC...ACG-5'@LB@ | |@LB@ 90 40@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -26.3807 kcal/mol@LB@Unfolding Energy - mRNA 12.8315 kcal/mol@LB@Unfolding Energy - sRNA 5.88014 kcal/mol@LB@@LB@Position - mRNA 49 -- 94@LB@Position - sRNA 41 -- 89@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 168 |
0.006702 |
0.1406 |
b2051 |
wcaH |
-7.67 |
0.342256 |
86 -- 123 |
5 -- 40 |
GDP-mannose mannosyl hydrolase |
|
_____________85_______________________________________124\n_____________|________________________________________|\n5'-GCG...ACUGC____U___AC_____UG____A_______UG_________GAAAU...UUG-3'\n______________UGGA_GUG__GCGCC__CAUC_GCUUGGC___GUA_UCAC\n______________||||_|:|__:||||__||||_|||||:|___|:|_||||\n______________ACCU_CGC__UGCGG__GUAG_CGAACUG___CGU_AGUG\n3'-UUU...GUUAU________GU___________________CAA___A____GACG-5'\n_____________|________________________________________|\n_____________41_______________________________________4\n |
108 -- 114 |
16 -- 22 |
-36.6804 kcal/mol |
13.756 kcal/mol |
15.262 kcal/mol |
85 124@LB@ | |@LB@5'-GCG...ACUGC U AC UG A UG GAAAU...UUG-3'@LB@ UGGA GUG GCGCC CAUC GCUUGGC GUA UCAC@LB@ |||| |:| :|||| |||| |||||:| |:| ||||@LB@ ACCU CGC UGCGG GUAG CGAACUG CGU AGUG@LB@3'-UUU...GUUAU GU CAA A GACG-5'@LB@ | |@LB@ 41 4@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -36.6804 kcal/mol@LB@Unfolding Energy - mRNA 13.756 kcal/mol@LB@Unfolding Energy - sRNA 15.262 kcal/mol@LB@@LB@Position - mRNA 86 -- 123@LB@Position - sRNA 5 -- 40@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 123 |
0.004425 |
0.1258 |
b2535 |
csiE |
-7.63 |
0.347411 |
1 -- 40 |
5 -- 36 |
stationary phase inducible protein |
|
______________1_______________________________________41\n______________|_______________________________________|\n___________5'-__AG___UAA____UGA_____A_C___AUAAU_______AAAAC...UGG-3'\n______________GC__AAC___CCCA___UCGCU_G_ACG_____CAUUCAC\n______________||__|||___||||___|||||_|_|||_____|||||||\n______________CG__UUG___GGGU___AGCGA_C_UGC_____GUAAGUG\n3'-UUU...UACCU__CG___C______________A_____AAC_________GACG-5'\n_____________|________________________________________|\n_____________37_______________________________________4\n |
34 -- 40 |
5 -- 11 |
-25.9316 kcal/mol |
3.04784 kcal/mol |
15.2569 kcal/mol |
1 41@LB@ | |@LB@ 5'- AG UAA UGA A C AUAAU AAAAC...UGG-3'@LB@ GC AAC CCCA UCGCU G ACG CAUUCAC@LB@ || ||| |||| ||||| | ||| |||||||@LB@ CG UUG GGGU AGCGA C UGC GUAAGUG@LB@3'-UUU...UACCU CG C A AAC GACG-5'@LB@ | |@LB@ 37 4@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -25.9316 kcal/mol@LB@Unfolding Energy - mRNA 3.04784 kcal/mol@LB@Unfolding Energy - sRNA 15.2569 kcal/mol@LB@@LB@Position - mRNA 1 -- 40@LB@Position - sRNA 5 -- 36@LB@Position Seed - mRNA 34 -- 40@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 158 |
0.006224 |
0.1377 |
b3553 |
ghrB |
-7.62 |
0.349627 |
252 -- 258 |
1 -- 7 |
glyoxylate/hydroxypyruvate reductase B |
|
_____________251_____259\n_____________|_______|\n5'-UCA...UGCAA_______AAGAG...CAC-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
252 -- 258 |
1 -- 7 |
-12.8134 kcal/mol |
2.86334 kcal/mol |
2.34039 kcal/mol |
251 259@LB@ | |@LB@5'-UCA...UGCAA AAGAG...CAC-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.62 kcal/mol@LB@Hybridization Energy -12.8134 kcal/mol@LB@Unfolding Energy - mRNA 2.86334 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 252 -- 258@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 190 |
0.008377 |
0.1548 |
b3167 |
rbfA |
-7.61 |
0.351010 |
14 -- 35 |
19 -- 38 |
30s ribosome binding factor |
|
_____________13_____________________36\n_____________|______________________|\n5'-AUU...UCAUC___A_C______A_________AAGGU...GCA-3'\n______________GAG_U_CAACGU_CCAUUGCUU\n______________|||_:_|||||:_||||:||||\n______________CUC_G_GUUGCG_GGUAGCGAA\n3'-UUU...UAUAC_____C________________CUGCA...ACG-5'\n_____________|______________________|\n_____________39_____________________18\n |
29 -- 35 |
19 -- 25 |
-22.6036 kcal/mol |
2.81921 kcal/mol |
12.1801 kcal/mol |
13 36@LB@ | |@LB@5'-AUU...UCAUC A C A AAGGU...GCA-3'@LB@ GAG U CAACGU CCAUUGCUU@LB@ ||| : |||||: ||||:||||@LB@ CUC G GUUGCG GGUAGCGAA@LB@3'-UUU...UAUAC C CUGCA...ACG-5'@LB@ | |@LB@ 39 18@LB@@LB@@LB@Energy -7.61 kcal/mol@LB@Hybridization Energy -22.6036 kcal/mol@LB@Unfolding Energy - mRNA 2.81921 kcal/mol@LB@Unfolding Energy - sRNA 12.1801 kcal/mol@LB@@LB@Position - mRNA 14 -- 35@LB@Position - sRNA 19 -- 38@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 19 -- 25@LB@ |
