178 |
0.008884 |
0.1747 |
b0051 |
rsmA |
-9.94 |
0.250586 |
2 -- 32 |
30 -- 58 |
16S rRNA m(6)A1518 m(6)A1519 dimethyltransferase SAM-dependent |
|
_____________1_______________________________33\n_____________|_______________________________|\n__________5'-G__A___AC___GA______UC__C_______AAAAU...UUA-3'\n______________CG_UGU__CAC__UCAGGG__UU_CCGUGCU\n______________||_|||__|||__||||||__||_||:||||\n______________GC_ACA__GUG__AGUCCC__AA_GGUACGA\n3'-UUU...GUUAA__A___AA___________CU__A_______AUAUU...GCA-5'\n_____________|_______________________________|\n_____________59______________________________29\n |
26 -- 32 |
30 -- 36 |
-26.3106 kcal/mol |
10.5715 kcal/mol |
5.79877 kcal/mol |
1 33@LB@ | |@LB@ 5'-G A AC GA UC C AAAAU...UUA-3'@LB@ CG UGU CAC UCAGGG UU CCGUGCU@LB@ || ||| ||| |||||| || ||:||||@LB@ GC ACA GUG AGUCCC AA GGUACGA@LB@3'-UUU...GUUAA A AA CU A AUAUU...GCA-5'@LB@ | |@LB@ 59 29@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -26.3106 kcal/mol@LB@Unfolding Energy - mRNA 10.5715 kcal/mol@LB@Unfolding Energy - sRNA 5.79877 kcal/mol@LB@@LB@Position - mRNA 2 -- 32@LB@Position - sRNA 30 -- 58@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 30 -- 36@LB@ |
142 |
0.006549 |
0.1605 |
b3902 |
rhaD |
-9.93 |
0.251242 |
192 -- 218 |
44 -- 69 |
rhamnulose-1-phosphate aldolase |
|
_____________191_________________________219\n_____________|___________________________|\n5'-AGA...CAGGA______AACAUGCAAAACA________UCCUG...UGA-3'\n______________ACACAG_____________UUACUCAG\n______________||||||_____________|:||||||\n______________UGUGUC_____________AGUGAGUC\n3'-UUU...UGAUG______GUUAAGCAACAA_________CCCUA...GCA-5'\n_____________|___________________________|\n_____________70__________________________43\n |
212 -- 218 |
44 -- 50 |
-16.231 kcal/mol |
2.20309 kcal/mol |
4.09554 kcal/mol |
191 219@LB@ | |@LB@5'-AGA...CAGGA AACAUGCAAAACA UCCUG...UGA-3'@LB@ ACACAG UUACUCAG@LB@ |||||| |:||||||@LB@ UGUGUC AGUGAGUC@LB@3'-UUU...UGAUG GUUAAGCAACAA CCCUA...GCA-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -16.231 kcal/mol@LB@Unfolding Energy - mRNA 2.20309 kcal/mol@LB@Unfolding Energy - sRNA 4.09554 kcal/mol@LB@@LB@Position - mRNA 192 -- 218@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 44 -- 50@LB@ |
158 |
0.007677 |
0.1668 |
b1267 |
yciO |
-9.92 |
0.252655 |
228 -- 242 |
61 -- 75 |
putative RNA binding protein |
|
_____________227_____________243\n_____________|_______________|\n5'-GCG...AUCCU___A__C________CGUCU...CAA-3'\n______________GAU_AC_CACAGCAA\n______________||:_||_||||||||\n______________CUG_UG_GUGUCGUU\n3'-UUU...CGUUU___A__U________AAGCA...GCA-5'\n_____________|_______________|\n_____________76______________60\n |
236 -- 242 |
61 -- 67 |
-14.6343 kcal/mol |
1.46218 kcal/mol |
3.25399 kcal/mol |
227 243@LB@ | |@LB@5'-GCG...AUCCU A C CGUCU...CAA-3'@LB@ GAU AC CACAGCAA@LB@ ||: || ||||||||@LB@ CUG UG GUGUCGUU@LB@3'-UUU...CGUUU A U AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -14.6343 kcal/mol@LB@Unfolding Energy - mRNA 1.46218 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 228 -- 242@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 61 -- 67@LB@ |
191 |
0.009733 |
0.1776 |
b0190 |
yaeQ |
-9.83 |
0.261410 |
113 -- 128 |
45 -- 75 |
PDDEXK superfamily protein |
|
_____________112_____________________________129\n_____________|_______________________________|\n5'-UAC...AAGGU_______________________________UUUCU...CUU-3'\n______________GACUAUAC_CA______________CACUCA\n______________|||||:||_||______________||||||\n______________CUGAUGUG_GU______________GUGAGU\n3'-UUU...CGUUU________U__CGUUAAGCAACAAA______CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
114 -- 120 |
68 -- 74 |
-15.3898 kcal/mol |
1.82074 kcal/mol |
3.74078 kcal/mol |
112 129@LB@ | |@LB@5'-UAC...AAGGU UUUCU...CUU-3'@LB@ GACUAUAC CA CACUCA@LB@ |||||:|| || ||||||@LB@ CUGAUGUG GU GUGAGU@LB@3'-UUU...CGUUU U CGUUAAGCAACAAA CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -15.3898 kcal/mol@LB@Unfolding Energy - mRNA 1.82074 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 113 -- 128@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 68 -- 74@LB@ |
85 |
0.003677 |
0.1509 |
b0813 |
rhtA |
-9.71 |
0.273689 |
106 -- 123 |
34 -- 46 |
threonine and homoserine efflux system |
|
_____________105________________124\n_____________|__________________|\n5'-CAG...CAAAA_______AAAUU______ACAAA...CAC-3'\n______________CGGGGGA_____UUUUCA\n______________|:|||||_____|||:||\n______________GUCCCCU_____AAAGGU\n3'-UUU...AGUGA__________________ACGAA...GCA-5'\n_____________|__________________|\n_____________47_________________33\n |
106 -- 112 |
40 -- 46 |
-14.6812 kcal/mol |
3.4305 kcal/mol |
1.54427 kcal/mol |
105 124@LB@ | |@LB@5'-CAG...CAAAA AAAUU ACAAA...CAC-3'@LB@ CGGGGGA UUUUCA@LB@ |:||||| |||:||@LB@ GUCCCCU AAAGGU@LB@3'-UUU...AGUGA ACGAA...GCA-5'@LB@ | |@LB@ 47 33@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -14.6812 kcal/mol@LB@Unfolding Energy - mRNA 3.4305 kcal/mol@LB@Unfolding Energy - sRNA 1.54427 kcal/mol@LB@@LB@Position - mRNA 106 -- 123@LB@Position - sRNA 34 -- 46@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 40 -- 46@LB@ |
77 |
0.003184 |
0.1452 |
b4406 |
yaeP |
-9.70 |
0.274250 |
222 -- 254 |
40 -- 71 |
UPF0253 family protein |
|
_____________221________________________________255\n_____________|__________________________________|\n5'-ACC...AGUUA_______A_____A__CG_AAA________C___GACUU...UGC-3'\n______________AUACGCA_GCGGU_CG__G___UCGC_CAG_GGA\n______________|:||:||_||::|_||__|___||:|_|||_|||\n______________UGUGUGU_CGUUA_GC__C___AGUG_GUC_CCU\n3'-UUU...UCUGA_____________A__AA_AA_____A___C___AAAGG...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________39\n |
222 -- 228 |
65 -- 71 |
-25.8836 kcal/mol |
11.435 kcal/mol |
4.74818 kcal/mol |
221 255@LB@ | |@LB@5'-ACC...AGUUA A A CG AAA C GACUU...UGC-3'@LB@ AUACGCA GCGGU CG G UCGC CAG GGA@LB@ |:||:|| ||::| || | ||:| ||| |||@LB@ UGUGUGU CGUUA GC C AGUG GUC CCU@LB@3'-UUU...UCUGA A AA AA A C AAAGG...GCA-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -25.8836 kcal/mol@LB@Unfolding Energy - mRNA 11.435 kcal/mol@LB@Unfolding Energy - sRNA 4.74818 kcal/mol@LB@@LB@Position - mRNA 222 -- 254@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 65 -- 71@LB@ |
164 |
0.007775 |
0.1668 |
b2097 |
fbaB |
-9.67 |
0.277966 |
247 -- 265 |
48 -- 68 |
fructose-bisphosphate aldolase class I |
|
_____________246___________________266\n_____________|_____________________|\n5'-AAU...CCUUU_______C________A_G__AAUUC...AUG-3'\n______________UACAGCA___CGUUGU_U_AC\n______________:||||||___||||||_|_||\n______________GUGUCGU___GCAACA_A_UG\n3'-UUU...GAUGU_______UAA______A_G__AGUCC...GCA-5'\n_____________|_____________________|\n_____________69____________________47\n |
247 -- 253 |
62 -- 68 |
-18.0796 kcal/mol |
4.78239 kcal/mol |
3.63277 kcal/mol |
246 266@LB@ | |@LB@5'-AAU...CCUUU C A G AAUUC...AUG-3'@LB@ UACAGCA CGUUGU U AC@LB@ :|||||| |||||| | ||@LB@ GUGUCGU GCAACA A UG@LB@3'-UUU...GAUGU UAA A G AGUCC...GCA-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -18.0796 kcal/mol@LB@Unfolding Energy - mRNA 4.78239 kcal/mol@LB@Unfolding Energy - sRNA 3.63277 kcal/mol@LB@@LB@Position - mRNA 247 -- 265@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 62 -- 68@LB@ |
113 |
0.004991 |
0.1545 |
b0888 |
trxB |
-9.59 |
0.285839 |
209 -- 223 |
61 -- 75 |
thioredoxin reductase FAD/NAD(P)-binding |
|
_____________208_____________224\n_____________|_______________|\n5'-AAC...GGCAC___CAA_________ACUGC...UGC-3'\n______________GAC___ACACAGUAA\n______________|||___||||||:||\n______________CUG___UGUGUCGUU\n3'-UUU...CGUUU___AUG_________AAGCA...GCA-5'\n_____________|_______________|\n_____________76______________60\n |
217 -- 223 |
61 -- 67 |
-15.4977 kcal/mol |
2.65453 kcal/mol |
3.25399 kcal/mol |
208 224@LB@ | |@LB@5'-AAC...GGCAC CAA ACUGC...UGC-3'@LB@ GAC ACACAGUAA@LB@ ||| ||||||:||@LB@ CUG UGUGUCGUU@LB@3'-UUU...CGUUU AUG AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -15.4977 kcal/mol@LB@Unfolding Energy - mRNA 2.65453 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 209 -- 223@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 61 -- 67@LB@ |
162 |
0.007731 |
0.1668 |
b4202 |
rpsR |
-9.58 |
0.287294 |
60 -- 77 |
62 -- 76 |
30S ribosomal subunit protein S18 |
|
_____________59_________________78\n_____________|__________________|\n5'-CGG...AAACC____CAU___U_______UAACG...UCA-3'\n______________AGGC___UAC_CACAGUA\n______________||:|___|||_|||||:|\n______________UCUG___AUG_GUGUCGU\n3'-UUU...CCGUU__________U_______UAAGC...GCA-5'\n_____________|__________________|\n_____________77_________________61\n |
71 -- 77 |
62 -- 68 |
-14.2281 kcal/mol |
1.39912 kcal/mol |
3.25371 kcal/mol |
59 78@LB@ | |@LB@5'-CGG...AAACC CAU U UAACG...UCA-3'@LB@ AGGC UAC CACAGUA@LB@ ||:| ||| |||||:|@LB@ UCUG AUG GUGUCGU@LB@3'-UUU...CCGUU U UAAGC...GCA-5'@LB@ | |@LB@ 77 61@LB@@LB@@LB@Energy -9.58 kcal/mol@LB@Hybridization Energy -14.2281 kcal/mol@LB@Unfolding Energy - mRNA 1.39912 kcal/mol@LB@Unfolding Energy - sRNA 3.25371 kcal/mol@LB@@LB@Position - mRNA 60 -- 77@LB@Position - sRNA 62 -- 76@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 62 -- 68@LB@ |
148 |
0.006951 |
0.1638 |
b3995 |
rsd |
-9.56 |
0.289012 |
16 -- 28 |
58 -- 70 |
stationary phase protein binds sigma 70 RNA polymerase subunit |
|
_____________15____________29\n_____________|_____________|\n5'-AAU...UUCGC_____________UCCCU...ACU-3'\n______________CAUAUGGCAAUUC\n______________||:|::|||||||\n______________GUGUGUCGUUAAG\n3'-UUU...CUGAU_____________CAACA...GCA-5'\n_____________|_____________|\n_____________71____________57\n |
22 -- 28 |
58 -- 64 |
-15.8606 kcal/mol |
3.09015 kcal/mol |
3.21169 kcal/mol |
15 29@LB@ | |@LB@5'-AAU...UUCGC UCCCU...ACU-3'@LB@ CAUAUGGCAAUUC@LB@ ||:|::|||||||@LB@ GUGUGUCGUUAAG@LB@3'-UUU...CUGAU CAACA...GCA-5'@LB@ | |@LB@ 71 57@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -15.8606 kcal/mol@LB@Unfolding Energy - mRNA 3.09015 kcal/mol@LB@Unfolding Energy - sRNA 3.21169 kcal/mol@LB@@LB@Position - mRNA 16 -- 28@LB@Position - sRNA 58 -- 70@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 58 -- 64@LB@ |