115 |
0.009659 |
0.2693 |
b0155 |
clcA |
-5.80 |
0.214551 |
108 -- 124 |
25 -- 40 |
H(+)/Cl(-) exchange transporter |
|
_____________107_______________125\n_____________|_________________|\n5'-AGU...UUUGU__________C___A__CUUUG...UAG-3'\n______________GCAUUUGAAA_AUU_CG\n______________|||:||:|||_|||_||\n______________CGUGAAUUUU_UAA_GC\n3'-UUU...UUCUU__________U______AAUGU...CAA-5'\n_____________|_________________|\n_____________41________________24\n |
109 -- 115 |
33 -- 39 |
-11.0899 kcal/mol |
3.63771 kcal/mol |
1.64821 kcal/mol |
107 125@LB@ | |@LB@5'-AGU...UUUGU C A CUUUG...UAG-3'@LB@ GCAUUUGAAA AUU CG@LB@ |||:||:||| ||| ||@LB@ CGUGAAUUUU UAA GC@LB@3'-UUU...UUCUU U AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -5.80 kcal/mol@LB@Hybridization Energy -11.0899 kcal/mol@LB@Unfolding Energy - mRNA 3.63771 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 108 -- 124@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 33 -- 39@LB@ |
55 |
0.002761 |
0.1597 |
b0238 |
gpt |
-5.76 |
0.219641 |
15 -- 42 |
30 -- 59 |
xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase |
|
_____________14_____________________________43\n_____________|______________________________|\n5'-AUG...ACACA____AG____________UAUG________UACCA...UUG-3'\n______________AGAC__GCUU__GCGAGA____UUUGAGAA\n______________|:||__||||__||:|||____:||:|:||\n______________UUUG__CGAA__CGUUCU____GAAUUUUU\n3'-UUU...CCUAC____AA____UU______UCGU________UAAGC...CAA-5'\n_____________|______________________________|\n_____________60_____________________________29\n |
36 -- 42 |
30 -- 36 |
-17.3334 kcal/mol |
5.3037 kcal/mol |
6.27042 kcal/mol |
14 43@LB@ | |@LB@5'-AUG...ACACA AG UAUG UACCA...UUG-3'@LB@ AGAC GCUU GCGAGA UUUGAGAA@LB@ |:|| |||| ||:||| :||:|:||@LB@ UUUG CGAA CGUUCU GAAUUUUU@LB@3'-UUU...CCUAC AA UU UCGU UAAGC...CAA-5'@LB@ | |@LB@ 60 29@LB@@LB@@LB@Energy -5.76 kcal/mol@LB@Hybridization Energy -17.3334 kcal/mol@LB@Unfolding Energy - mRNA 5.3037 kcal/mol@LB@Unfolding Energy - sRNA 6.27042 kcal/mol@LB@@LB@Position - mRNA 15 -- 42@LB@Position - sRNA 30 -- 59@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 30 -- 36@LB@ |
130 |
0.01234 |
0.3033 |
b2958 |
yggN |
-5.61 |
0.236844 |
227 -- 233 |
35 -- 41 |
DUF2884 family putative periplasmic protein |
|
_____________226_____234\n_____________|_______|\n5'-ACG...GCGGC_______UCAGU...UUG-3'\n______________AGCACUU\n______________|||||||\n______________UCGUGAA\n3'-UUU...GUUCU_______UUUUU...CAA-5'\n_____________|_______|\n_____________42______34\n |
227 -- 233 |
35 -- 41 |
-8.1936 kcal/mol |
0.976472 kcal/mol |
1.6033 kcal/mol |
226 234@LB@ | |@LB@5'-ACG...GCGGC UCAGU...UUG-3'@LB@ AGCACUU@LB@ |||||||@LB@ UCGUGAA@LB@3'-UUU...GUUCU UUUUU...CAA-5'@LB@ | |@LB@ 42 34@LB@@LB@@LB@Energy -5.61 kcal/mol@LB@Hybridization Energy -8.1936 kcal/mol@LB@Unfolding Energy - mRNA 0.976472 kcal/mol@LB@Unfolding Energy - sRNA 1.6033 kcal/mol@LB@@LB@Position - mRNA 227 -- 233@LB@Position - sRNA 35 -- 41@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 35 -- 41@LB@ |
169 |
0.01902 |
0.3625 |
b0858 |
ybjO |
-5.59 |
0.239654 |
140 -- 156 |
25 -- 43 |
DUF2593 family inner membrane protein |
|
_____________139__________________157\n_____________|____________________|\n5'-AUG...UGGCU____A_______________CCAAC...UUA-3'\n______________GAAG_CACU___AAAAUUUG\n______________||||_||||___||||||:|\n______________CUUC_GUGA___UUUUAAGC\n3'-UUU...UCGUU_________AUU________AAUGU...CAA-5'\n_____________|____________________|\n_____________44___________________24\n |
150 -- 156 |
25 -- 31 |
-11.6219 kcal/mol |
2.26879 kcal/mol |
3.76226 kcal/mol |
139 157@LB@ | |@LB@5'-AUG...UGGCU A CCAAC...UUA-3'@LB@ GAAG CACU AAAAUUUG@LB@ |||| |||| ||||||:|@LB@ CUUC GUGA UUUUAAGC@LB@3'-UUU...UCGUU AUU AAUGU...CAA-5'@LB@ | |@LB@ 44 24@LB@@LB@@LB@Energy -5.59 kcal/mol@LB@Hybridization Energy -11.6219 kcal/mol@LB@Unfolding Energy - mRNA 2.26879 kcal/mol@LB@Unfolding Energy - sRNA 3.76226 kcal/mol@LB@@LB@Position - mRNA 140 -- 156@LB@Position - sRNA 25 -- 43@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 25 -- 31@LB@ |
176 |
0.02022 |
0.37 |
b0495 |
ybbA |
-5.55 |
0.244939 |
212 -- 247 |
24 -- 59 |
putative ABC transporter ATPase |
|
_____________211___________________________________248\n_____________|_____________________________________|\n5'-GCC...GCGGA____A_____G____UCAUCAU___________C___CGGUC...UCA-3'\n______________AAAC_UUGUU_AAGU________CUUAAGAAGU_CGU\n______________||||_|||:|_|||:________|||||:||:|_|||\n______________UUUG_AACGA_UUCG________GAAUUUUUUA_GCA\n3'-UUU...CCUAC__________A____UUCUUCGU__________A___AUGUG...CAA-5'\n_____________|_____________________________________|\n_____________60____________________________________23\n |
235 -- 241 |
30 -- 36 |
-18.4731 kcal/mol |
6.64875 kcal/mol |
6.27609 kcal/mol |
211 248@LB@ | |@LB@5'-GCC...GCGGA A G UCAUCAU C CGGUC...UCA-3'@LB@ AAAC UUGUU AAGU CUUAAGAAGU CGU@LB@ |||| |||:| |||: |||||:||:| |||@LB@ UUUG AACGA UUCG GAAUUUUUUA GCA@LB@3'-UUU...CCUAC A UUCUUCGU A AUGUG...CAA-5'@LB@ | |@LB@ 60 23@LB@@LB@@LB@Energy -5.55 kcal/mol@LB@Hybridization Energy -18.4731 kcal/mol@LB@Unfolding Energy - mRNA 6.64875 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 212 -- 247@LB@Position - sRNA 24 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 30 -- 36@LB@ |
73 |
0.004067 |
0.1794 |
b1244 |
oppB |
-5.52 |
0.247965 |
106 -- 113 |
36 -- 43 |
oligopeptide ABC transporter permease |
|
_____________105______114\n_____________|________|\n5'-UCC...AUUGU________AAUGG...GCC-3'\n______________GAAGCACU\n______________||||||||\n______________CUUCGUGA\n3'-UUU...UCGUU________AUUUU...CAA-5'\n_____________|________|\n_____________44_______35\n |
107 -- 113 |
36 -- 42 |
-11.7212 kcal/mol |
2.50266 kcal/mol |
3.69444 kcal/mol |
105 114@LB@ | |@LB@5'-UCC...AUUGU AAUGG...GCC-3'@LB@ GAAGCACU@LB@ ||||||||@LB@ CUUCGUGA@LB@3'-UUU...UCGUU AUUUU...CAA-5'@LB@ | |@LB@ 44 35@LB@@LB@@LB@Energy -5.52 kcal/mol@LB@Hybridization Energy -11.7212 kcal/mol@LB@Unfolding Energy - mRNA 2.50266 kcal/mol@LB@Unfolding Energy - sRNA 3.69444 kcal/mol@LB@@LB@Position - mRNA 106 -- 113@LB@Position - sRNA 36 -- 43@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 36 -- 42@LB@ |
96 |
0.007122 |
0.239 |
b2060 |
wzc |
-5.51 |
0.249431 |
285 -- 291 |
37 -- 43 |
colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase |
|
_____________284_____292\n_____________|_______|\n5'-GAA...UCAUU_______GCUGG...GGG-3'\n______________GAAGCGC\n______________|||||:|\n______________CUUCGUG\n3'-UUU...UCGUU_______AAUUU...CAA-5'\n_____________|_______|\n_____________44______36\n |
285 -- 291 |
37 -- 43 |
-9.9751 kcal/mol |
0.803081 kcal/mol |
3.6595 kcal/mol |
284 292@LB@ | |@LB@5'-GAA...UCAUU GCUGG...GGG-3'@LB@ GAAGCGC@LB@ |||||:|@LB@ CUUCGUG@LB@3'-UUU...UCGUU AAUUU...CAA-5'@LB@ | |@LB@ 44 36@LB@@LB@@LB@Energy -5.51 kcal/mol@LB@Hybridization Energy -9.9751 kcal/mol@LB@Unfolding Energy - mRNA 0.803081 kcal/mol@LB@Unfolding Energy - sRNA 3.6595 kcal/mol@LB@@LB@Position - mRNA 285 -- 291@LB@Position - sRNA 37 -- 43@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 37 -- 43@LB@ |
145 |
0.01456 |
0.3231 |
b1529 |
marC |
-5.50 |
0.250589 |
206 -- 227 |
39 -- 59 |
UPF0056 family inner membrane protein |
|
_____________205____________________228\n_____________|______________________|\n5'-UGG...AUGUU__________A______UU___CUGGG...GCA-3'\n______________AGAUUUGUUU_AAGCAA__GGC\n______________|:|:|||:||_||||||__:||\n______________UUUGAACGAA_UUCGUU__UCG\n3'-UUU...CCUAC_________________CU___UGAAU...CAA-5'\n_____________|______________________|\n_____________60_____________________38\n |
207 -- 213 |
52 -- 58 |
-17.1508 kcal/mol |
5.49588 kcal/mol |
6.15149 kcal/mol |
205 228@LB@ | |@LB@5'-UGG...AUGUU A UU CUGGG...GCA-3'@LB@ AGAUUUGUUU AAGCAA GGC@LB@ |:|:|||:|| |||||| :||@LB@ UUUGAACGAA UUCGUU UCG@LB@3'-UUU...CCUAC CU UGAAU...CAA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -5.50 kcal/mol@LB@Hybridization Energy -17.1508 kcal/mol@LB@Unfolding Energy - mRNA 5.49588 kcal/mol@LB@Unfolding Energy - sRNA 6.15149 kcal/mol@LB@@LB@Position - mRNA 206 -- 227@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 52 -- 58@LB@ |
148 |
0.01496 |
0.3255 |
b2202 |
napC |
-5.47 |
0.254772 |
189 -- 211 |
26 -- 46 |
quinol dehydrogenase electron source for NapAB |
|
_____________188_____________________212\n_____________|_______________________|\n5'-ACG...GGAAA_______U____A__________UGACC...GUU-3'\n______________UAAGAGG_UAUU_UGGGAAAUUC\n______________:||||:|_:|:|_|:::||||||\n______________GUUCUUC_GUGA_AUUUUUUAAG\n3'-UUU...AAUUC_______________________CAAUG...CAA-5'\n_____________|_______________________|\n_____________47______________________25\n |
205 -- 211 |
26 -- 32 |
-14.2639 kcal/mol |
2.66276 kcal/mol |
6.13041 kcal/mol |
188 212@LB@ | |@LB@5'-ACG...GGAAA U A UGACC...GUU-3'@LB@ UAAGAGG UAUU UGGGAAAUUC@LB@ :||||:| :|:| |:::||||||@LB@ GUUCUUC GUGA AUUUUUUAAG@LB@3'-UUU...AAUUC CAAUG...CAA-5'@LB@ | |@LB@ 47 25@LB@@LB@@LB@Energy -5.47 kcal/mol@LB@Hybridization Energy -14.2639 kcal/mol@LB@Unfolding Energy - mRNA 2.66276 kcal/mol@LB@Unfolding Energy - sRNA 6.13041 kcal/mol@LB@@LB@Position - mRNA 189 -- 211@LB@Position - sRNA 26 -- 46@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 26 -- 32@LB@ |
97 |
0.007216 |
0.239 |
b2021 |
hisC |
-5.42 |
0.261518 |
59 -- 66 |
37 -- 44 |
histidinol-phosphate aminotransferase |
|
_____________58_______67\n_____________|________|\n5'-GUU...UUUCC________AUGAC...GGC-3'\n______________AGAAGCGC\n______________||||||:|\n______________UCUUCGUG\n3'-UUU...UUCGU________AAUUU...CAA-5'\n_____________|________|\n_____________45_______36\n |
60 -- 66 |
37 -- 43 |
-11.6623 kcal/mol |
1.85203 kcal/mol |
4.39141 kcal/mol |
58 67@LB@ | |@LB@5'-GUU...UUUCC AUGAC...GGC-3'@LB@ AGAAGCGC@LB@ ||||||:|@LB@ UCUUCGUG@LB@3'-UUU...UUCGU AAUUU...CAA-5'@LB@ | |@LB@ 45 36@LB@@LB@@LB@Energy -5.42 kcal/mol@LB@Hybridization Energy -11.6623 kcal/mol@LB@Unfolding Energy - mRNA 1.85203 kcal/mol@LB@Unfolding Energy - sRNA 4.39141 kcal/mol@LB@@LB@Position - mRNA 59 -- 66@LB@Position - sRNA 37 -- 44@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 37 -- 43@LB@ |