101 |
0.005112 |
0.1728 |
stm0113 |
leuA |
-13.72 |
0.187230 |
187 -- 230 |
37 -- 84 |
2-isopropylmalate synthase |
|
_____________186_____________________231\n_____________|_______________________|\n5'-AUA...UGGAG____G_____________G____AGCAA...UGG-3'\n______________ACAA_GAC_C_ACAUCAU_AGCC\n______________||||_:||_|_||||||:_|:||\n______________UGUU_UUG_G_UGUAGUG_UUGG\n3'-UUU...GUUUG____G___U_U____________CAUUC...UCA-5'\n_____________|_______________________|\n_____________85______________________36\n |
196 -- 202 |
67 -- 73 |
-19.8594 kcal/mol |
2.76514 kcal/mol |
8.15907 kcal/mol |
186 231@LB@ | |@LB@5'-AUA...UGGAG G G AGCAA...UGG-3'@LB@ ACAA GAC C ACAUCAU AGCC@LB@ |||| :|| | ||||||: |:||@LB@ UGUU UUG G UGUAGUG UUGG@LB@3'-UUU...GUUUG G U U CAUUC...UCA-5'@LB@ | |@LB@ 85 36@LB@@LB@@LB@Energy -13.72 kcal/mol@LB@Hybridization Energy -19.8594 kcal/mol@LB@Unfolding Energy - mRNA 2.76514 kcal/mol@LB@Unfolding Energy - sRNA 8.15907 kcal/mol@LB@@LB@Position - mRNA 187 -- 230@LB@Position - sRNA 37 -- 84@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 67 -- 73@LB@ |
102 |
0.005164 |
0.1728 |
stm0668 |
ybeY |
-18.23 |
0.034693 |
146 -- 193 |
37 -- 81 |
rRNA maturation RNase YbeY |
|
_____________145__________________________________________194\n_____________|____________________________________________|\n5'-UCC...AAAAC____________UUG____________G_______GU_______AGGAG...CGC-3'\n______________GCAAA_GCGGCG___GCGGCA____GA_CGUAAGC__GAAGCCC\n______________|||||_:|::|:___:|::||____:|_|||||||__:||||||\n______________CGUUU_UGUUGU___UGUUGU____UU_GCAUUCG__UUUCGGG\n3'-UUU...GUUAA_____G______UG_______AGUG__G_______GU_______UAGUC...UCA-5'\n_____________|____________________________________________|\n_____________82___________________________________________36\n |
178 -- 184 |
48 -- 54 |
-38.2699 kcal/mol |
15.4401 kcal/mol |
16.4278 kcal/mol |
145 194@LB@ | |@LB@5'-UCC...AAAAC UUG G GU AGGAG...CGC-3'@LB@ GCAAA GCGGCG GCGGCA GA CGUAAGC GAAGCCC@LB@ ||||| :|::|: :|::|| :| ||||||| :||||||@LB@ CGUUU UGUUGU UGUUGU UU GCAUUCG UUUCGGG@LB@3'-UUU...GUUAA G UG AGUG G GU UAGUC...UCA-5'@LB@ | |@LB@ 82 36@LB@@LB@@LB@Energy -18.23 kcal/mol@LB@Hybridization Energy -38.2699 kcal/mol@LB@Unfolding Energy - mRNA 15.4401 kcal/mol@LB@Unfolding Energy - sRNA 16.4278 kcal/mol@LB@@LB@Position - mRNA 146 -- 193@LB@Position - sRNA 37 -- 81@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 48 -- 54@LB@ |
103 |
0.005167 |
0.1728 |
stm2670 |
aroF |
-17.31 |
0.049328 |
173 -- 242 |
25 -- 90 |
3-deoxy-7-phosphoheptulonate synthase |
|
_____________172______________________________________________________________________243\n_____________|________________________________________________________________________|\n5'-CUU...CUAUC_______AGAA__G____G_____C___AU____A_____A_G____U___UAACG_______CA_______ACAGG...AGG-3'\n______________GCAAACA____AA_ACAG_AUCGC_AUC____GC_AAAAG_C_CG_C_GAA_____UACGUAU__CCGAUGA\n______________|||||||____||_|||:_|||:|_|:|____||_|||||_|_|:_|_|||_____:|||:||__|||||:|\n______________CGUUUGU____UU_UGUU_UAGUG_UGG____CG_UUUUC_G_GU_G_CUU_____GUGCGUA__GGCUAUU\n3'-UUU...GUUAA_______GUUG__G____G_____U___CAUU__G_______G__A_U_______________A________UUGAA...UCA-5'\n_____________|________________________________________________________________________|\n_____________91_______________________________________________________________________24\n |
226 -- 232 |
34 -- 40 |
-46.7665 kcal/mol |
10.372 kcal/mol |
24.1795 kcal/mol |
172 243@LB@ | |@LB@5'-CUU...CUAUC AGAA G G C AU A A G U UAACG CA ACAGG...AGG-3'@LB@ GCAAACA AA ACAG AUCGC AUC GC AAAAG C CG C GAA UACGUAU CCGAUGA@LB@ ||||||| || |||: |||:| |:| || ||||| | |: | ||| :|||:|| |||||:|@LB@ CGUUUGU UU UGUU UAGUG UGG CG UUUUC G GU G CUU GUGCGUA GGCUAUU@LB@3'-UUU...GUUAA GUUG G G U CAUU G G A U A UUGAA...UCA-5'@LB@ | |@LB@ 91 24@LB@@LB@@LB@Energy -17.31 kcal/mol@LB@Hybridization Energy -46.7665 kcal/mol@LB@Unfolding Energy - mRNA 10.372 kcal/mol@LB@Unfolding Energy - sRNA 24.1795 kcal/mol@LB@@LB@Position - mRNA 173 -- 242@LB@Position - sRNA 25 -- 90@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 34 -- 40@LB@ |
104 |
0.005232 |
0.1728 |
stm0744 |
ybgC |
-16.85 |
0.058772 |
132 -- 175 |
54 -- 90 |
tol-pal system-associated acyl-CoA thioesterase |
|
_____________131_____________________________176\n_____________|_______________________________|\n5'-CUU...ACAAG____U____________UCUUGA________GGCGG...AAA-3'\n______________GCGA_AUACAACGGCAU______GGCAUUAC\n______________||:|_|:|||||::||:______::|||:||\n______________CGUU_UGUGUUGUUGUG______UUGUAGUG\n3'-UUU...GUUAA_______________________________UUGGC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________53\n |
156 -- 162 |
67 -- 73 |
-23.8418 kcal/mol |
6.2547 kcal/mol |
5.68203 kcal/mol |
131 176@LB@ | |@LB@5'-CUU...ACAAG U UCUUGA GGCGG...AAA-3'@LB@ GCGA AUACAACGGCAU GGCAUUAC@LB@ ||:| |:|||||::||: ::|||:||@LB@ CGUU UGUGUUGUUGUG UUGUAGUG@LB@3'-UUU...GUUAA UUGGC...UCA-5'@LB@ | |@LB@ 91 53@LB@@LB@@LB@Energy -16.85 kcal/mol@LB@Hybridization Energy -23.8418 kcal/mol@LB@Unfolding Energy - mRNA 6.2547 kcal/mol@LB@Unfolding Energy - sRNA 5.68203 kcal/mol@LB@@LB@Position - mRNA 132 -- 175@LB@Position - sRNA 54 -- 90@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 67 -- 73@LB@ |
105 |
0.005236 |
0.1728 |
stm4566 |
yjjI |
-12.28 |
0.305832 |
96 -- 137 |
40 -- 77 |
YjjI family glycine radical enzyme |
|
_____________95________________138\n_____________|_________________|\n5'-ACA...UUUUC____________U____CCGGC...UGG-3'\n______________UACAAUAGCGCA_CGUC\n______________:||||:|:|:||_|:||\n______________GUGUUGUUGUGU_GUAG\n3'-UUU...CGUUU____________U____UGUUG...UCA-5'\n_____________|_________________|\n_____________78________________39\n |
167 -- 173 |
74 -- 80 |
-18.3997 kcal/mol |
3.44142 kcal/mol |
3.92987 kcal/mol |
95 138@LB@ | |@LB@5'-ACA...UUUUC U CCGGC...UGG-3'@LB@ UACAAUAGCGCA CGUC@LB@ :||||:|:|:|| |:||@LB@ GUGUUGUUGUGU GUAG@LB@3'-UUU...CGUUU U UGUUG...UCA-5'@LB@ | |@LB@ 78 39@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -18.3997 kcal/mol@LB@Unfolding Energy - mRNA 3.44142 kcal/mol@LB@Unfolding Energy - sRNA 3.92987 kcal/mol@LB@@LB@Position - mRNA 96 -- 137@LB@Position - sRNA 40 -- 77@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 74 -- 80@LB@ |
106 |
0.005253 |
0.1728 |
stm1172 |
flgM |
-15.84 |
0.086212 |
196 -- 254 |
36 -- 82 |
anti-sigma-28 factor FlgM |
|
_____________195________________255\n_____________|__________________|\n5'-GGC...GACGC__G_______________CCGGU...CGU-3'\n______________GC_AAAC_CAGCGACACG\n______________||_||||_||:|:||||:\n______________CG_UUUG_GUUGUUGUGU\n3'-UUU...GUUAA_______U__________UGUAG...UCA-5'\n_____________|__________________|\n_____________83_________________35\n |
263 -- 269 |
74 -- 80 |
-18.0556 kcal/mol |
5.48392 kcal/mol |
3.73436 kcal/mol |
195 255@LB@ | |@LB@5'-GGC...GACGC G CCGGU...CGU-3'@LB@ GC AAAC CAGCGACACG@LB@ || |||| ||:|:||||:@LB@ CG UUUG GUUGUUGUGU@LB@3'-UUU...GUUAA U UGUAG...UCA-5'@LB@ | |@LB@ 83 35@LB@@LB@@LB@Energy -15.84 kcal/mol@LB@Hybridization Energy -18.0556 kcal/mol@LB@Unfolding Energy - mRNA 5.48392 kcal/mol@LB@Unfolding Energy - sRNA 3.73436 kcal/mol@LB@@LB@Position - mRNA 196 -- 254@LB@Position - sRNA 36 -- 82@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 74 -- 80@LB@ |
107 |
0.00529 |
0.1728 |
stm0994 |
mukB |
-11.10 |
0.440174 |
5 -- 20 |
154 -- 167 |
cell division protein MukB |
|
_____________4_________________________21\n_____________|_________________________|\n5'-UGG...UCAGC_______U__________G______AAUAA...CCG-3'\n______________CGGACAG_GG_______A_AGGAAG\n______________|:|||||_||_______|_||||||\n______________GUCUGUC_CC_______U_UCCUUC\n3'-UUU...UACCU__________AUUUACA_G______ACUUU...UCA-5'\n_____________|_________________________|\n_____________168_______________________153\n |
179 -- 185 |
154 -- 160 |
-19.4251 kcal/mol |
3.58038 kcal/mol |
5.99227 kcal/mol |
4 21@LB@ | |@LB@5'-UGG...UCAGC U G AAUAA...CCG-3'@LB@ CGGACAG GG A AGGAAG@LB@ |:||||| || | ||||||@LB@ GUCUGUC CC U UCCUUC@LB@3'-UUU...UACCU AUUUACA G ACUUU...UCA-5'@LB@ | |@LB@ 168 153@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -19.4251 kcal/mol@LB@Unfolding Energy - mRNA 3.58038 kcal/mol@LB@Unfolding Energy - sRNA 5.99227 kcal/mol@LB@@LB@Position - mRNA 5 -- 20@LB@Position - sRNA 154 -- 167@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 154 -- 160@LB@ |
108 |
0.005311 |
0.1728 |
stm2183 |
cdd |
-16.35 |
0.071230 |
31 -- 68 |
151 -- 187 |
cytidine deaminase |
|
_____________30_________________69\n_____________|__________________|\n5'-UGG...AGAUC_____UUAA_________GGCCC...UGA-3'\n______________ACAUA____GACAUAGCA\n______________|||:|____:|||:|:||\n______________UGUGU____UUGUGUUGU\n3'-UUU...ACGUU_____UG___________AGUGU...UCA-5'\n_____________|__________________|\n_____________188________________150\n |
150 -- 156 |
71 -- 77 |
-12.389 kcal/mol |
1.12571 kcal/mol |
3.50787 kcal/mol |
30 69@LB@ | |@LB@5'-UGG...AGAUC UUAA GGCCC...UGA-3'@LB@ ACAUA GACAUAGCA@LB@ |||:| :|||:|:||@LB@ UGUGU UUGUGUUGU@LB@3'-UUU...ACGUU UG AGUGU...UCA-5'@LB@ | |@LB@ 188 150@LB@@LB@@LB@Energy -16.35 kcal/mol@LB@Hybridization Energy -12.389 kcal/mol@LB@Unfolding Energy - mRNA 1.12571 kcal/mol@LB@Unfolding Energy - sRNA 3.50787 kcal/mol@LB@@LB@Position - mRNA 31 -- 68@LB@Position - sRNA 151 -- 187@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 71 -- 77@LB@ |
109 |
0.005328 |
0.1728 |
stm3082 |
N/A |
-12.60 |
0.275269 |
106 -- 154 |
38 -- 90 |
galactonate oxidoreductase |
|
_____________105________________________155\n_____________|__________________________|\n5'-AAU...ACAAC______UUUUUA_______UU_____GGCCU...CGG-3'\n______________GCAGAC______AACAACA__CAGCA\n______________|||:||______|||||||__||:||\n______________CGUUUG______UUGUUGU__GUUGU\n3'-UUU...GUUAA______UG__________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________37\n |
118 -- 124 |
76 -- 82 |
-16.9817 kcal/mol |
2.50135 kcal/mol |
3.80671 kcal/mol |
105 155@LB@ | |@LB@5'-AAU...ACAAC UUUUUA UU GGCCU...CGG-3'@LB@ GCAGAC AACAACA CAGCA@LB@ |||:|| ||||||| ||:||@LB@ CGUUUG UUGUUGU GUUGU@LB@3'-UUU...GUUAA UG AGUGU...UCA-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.9817 kcal/mol@LB@Unfolding Energy - mRNA 2.50135 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 106 -- 154@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 76 -- 82@LB@ |
110 |
0.005337 |
0.1728 |
stm1920 |
cheW |
-12.58 |
0.277263 |
149 -- 192 |
51 -- 90 |
chemotaxis protein CheW |
|
_____________148__________193\n_____________|____________|\n5'-GUC...UGAUU____________AAUAA...UCC-3'\n______________GAGUGAGAAGGG\n______________:|||||:||:||\n______________UUCACUUUUUCC\n3'-UUU...UGUCC____________CAUCA...UCA-5'\n_____________|____________|\n_____________91___________50\n |
188 -- 194 |
128 -- 134 |
-15.4894 kcal/mol |
2.64754 kcal/mol |
3.77328 kcal/mol |
148 193@LB@ | |@LB@5'-GUC...UGAUU AAUAA...UCC-3'@LB@ GAGUGAGAAGGG@LB@ :|||||:||:||@LB@ UUCACUUUUUCC@LB@3'-UUU...UGUCC CAUCA...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -15.4894 kcal/mol@LB@Unfolding Energy - mRNA 2.64754 kcal/mol@LB@Unfolding Energy - sRNA 3.77328 kcal/mol@LB@@LB@Position - mRNA 149 -- 192@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 128 -- 134@LB@ |