| 11 |
3.674e-05 |
0.01134 |
b2099 |
yegU |
-10.44 |
0.033453 |
166 -- 229 |
3 -- 59 |
ADP-ribosylglycohydrolase family protein |
|
_____________165_________________________________________________________________230\n_____________|___________________________________________________________________|\n5'-GUG...UCGAU____G____AU____U___CAC______AAGUUAAA_____AC________AU______G_______UUAUG...CAC-3'\n______________GAUC_CGAU__UGCG_UGA___AAGGGG________UGAAA___AGAACGU____UCUC_GUGCUCU\n______________:|||_||||__|:||_|||___||::||________|||||___|||||:|____:|||_||:|:||\n______________UUAG_GCUA__AUGC_ACU___UUUUCC________ACUUU___UCUUGUA____GGAG_CAUGGGA\n3'-AUU...UCGGU___________________UCA______AG___________CUA_______GAAU____A_______UG-5'\n_____________|___________________________________________________________________|\n_____________60__________________________________________________________________2\n |
223 -- 229 |
3 -- 9 |
-36.2809 kcal/mol |
13.1575 kcal/mol |
12.7026 kcal/mol |
165 230@LB@ | |@LB@5'-GUG...UCGAU G AU U CAC AAGUUAAA AC AU G UUAUG...CAC-3'@LB@ GAUC CGAU UGCG UGA AAGGGG UGAAA AGAACGU UCUC GUGCUCU@LB@ :||| |||| |:|| ||| ||::|| ||||| |||||:| :||| ||:|:||@LB@ UUAG GCUA AUGC ACU UUUUCC ACUUU UCUUGUA GGAG CAUGGGA@LB@3'-AUU...UCGGU UCA AG CUA GAAU A UG-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -36.2809 kcal/mol@LB@Unfolding Energy - mRNA 13.1575 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 166 -- 229@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 12 |
3.867e-05 |
0.01134 |
b0728 |
sucC |
-9.87 |
0.049323 |
145 -- 186 |
43 -- 73 |
succinyl-CoA synthetase beta subunit |
|
_____________144_________________________________________187\n_____________|___________________________________________|\n5'-CGC...GAUAC_____________UACGGUUUAAA____AA_____________GAUGG...AAG-3'\n______________GAAAUAUUCGGUC___________AGAU__CGAUUAC_UGAAG\n______________:||||||||:|:|___________|:||__|||||||_|||||\n______________UUUUAUAAGUCGG___________UUUA__GCUAAUG_ACUUC\n3'-AUU...GCCGA____________________________G________C_____AUUUU...AUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________42\n |
175 -- 181 |
49 -- 55 |
-26.5157 kcal/mol |
7.48621 kcal/mol |
9.17828 kcal/mol |
144 187@LB@ | |@LB@5'-CGC...GAUAC UACGGUUUAAA AA GAUGG...AAG-3'@LB@ GAAAUAUUCGGUC AGAU CGAUUAC UGAAG@LB@ :||||||||:|:| |:|| ||||||| |||||@LB@ UUUUAUAAGUCGG UUUA GCUAAUG ACUUC@LB@3'-AUU...GCCGA G C AUUUU...AUG-5'@LB@ | |@LB@ 74 42@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -26.5157 kcal/mol@LB@Unfolding Energy - mRNA 7.48621 kcal/mol@LB@Unfolding Energy - sRNA 9.17828 kcal/mol@LB@@LB@Position - mRNA 145 -- 186@LB@Position - sRNA 43 -- 73@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 13 |
4.485e-05 |
0.01183 |
b0511 |
ybbW |
-13.60 |
0.002717 |
173 -- 210 |
18 -- 58 |
putative allantoin transporter |
|
_____________172________________________________________211\n_____________|__________________________________________|\n5'-UGG...ACGUU_______________AU____________UUU__________AGAGA...UUA-3'\n______________AUUCGA_UACGUGAA__UAAGAGG___GA___AUGGAACAUC\n______________||:|||_||||||||__|||:|||___||___||:|||||||\n______________UAGGCU_AUGCACUU__AUUUUCC___CU___UAUCUUGUAG\n3'-AUU...CGGUU______A________C________AGA__UUC__________AAUGG...AUG-5'\n_____________|__________________________________________|\n_____________59_________________________________________17\n |
204 -- 210 |
18 -- 24 |
-34.0515 kcal/mol |
8.25655 kcal/mol |
12.1809 kcal/mol |
172 211@LB@ | |@LB@5'-UGG...ACGUU AU UUU AGAGA...UUA-3'@LB@ AUUCGA UACGUGAA UAAGAGG GA AUGGAACAUC@LB@ ||:||| |||||||| |||:||| || ||:|||||||@LB@ UAGGCU AUGCACUU AUUUUCC CU UAUCUUGUAG@LB@3'-AUU...CGGUU A C AGA UUC AAUGG...AUG-5'@LB@ | |@LB@ 59 17@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -34.0515 kcal/mol@LB@Unfolding Energy - mRNA 8.25655 kcal/mol@LB@Unfolding Energy - sRNA 12.1809 kcal/mol@LB@@LB@Position - mRNA 173 -- 210@LB@Position - sRNA 18 -- 58@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 14 |
5.486e-05 |
0.01183 |
b0420 |
dxs |
-9.76 |
0.053178 |
24 -- 31 |
1 -- 8 |
1-deoxyxylulose-5-phosphate synthase thiamine triphosphate-binding FAD-requiring |
|
_____________23_______32\n_____________|________|\n5'-ACC...GUACC________ACUUC...ACG-3'\n______________UACCCUGC\n______________||||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
25 -- 31 |
1 -- 7 |
-13.3609 kcal/mol |
1.5078 kcal/mol |
2.11603 kcal/mol |
23 32@LB@ | |@LB@5'-ACC...GUACC ACUUC...ACG-3'@LB@ UACCCUGC@LB@ ||||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -13.3609 kcal/mol@LB@Unfolding Energy - mRNA 1.5078 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 24 -- 31@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 15 |
5.569e-05 |
0.01183 |
b1761 |
gdhA |
-12.26 |
0.008568 |
280 -- 294 |
40 -- 56 |
glutamate dehydrogenase NADP-specific |
|
_____________279_______________295\n_____________|_________________|\n5'-UAA...GCAAG___UU____________UGACCA-3'\n______________CCG____CGUGAAGUAA\n______________|||____||||||||||\n______________GGC____GCACUUCAUU\n3'-AUU...GUUUA___UAAU__________UUCCA...AUG-5'\n_____________|_________________|\n_____________57________________39\n |
288 -- 294 |
40 -- 46 |
-17.1153 kcal/mol |
1.5283 kcal/mol |
3.34823 kcal/mol |
279 295@LB@ | |@LB@5'-UAA...GCAAG UU UGACCA-3'@LB@ CCG CGUGAAGUAA@LB@ ||| ||||||||||@LB@ GGC GCACUUCAUU@LB@3'-AUU...GUUUA UAAU UUCCA...AUG-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -17.1153 kcal/mol@LB@Unfolding Energy - mRNA 1.5283 kcal/mol@LB@Unfolding Energy - sRNA 3.34823 kcal/mol@LB@@LB@Position - mRNA 280 -- 294@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 16 |
5.617e-05 |
0.01183 |
b0116 |
lpd |
-12.59 |
0.006546 |
264 -- 293 |
29 -- 63 |
dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
|
_____________263__________________________________294\n_____________|____________________________________|\n5'-CCG...CCGCU___U____________C___UUU_____________ACCGUAA-3'\n______________GCC___UCCG_UUGCG_UGA______AGGUCUGGAA\n______________|||___||||_||:||_|||______|||||||:||\n______________CGG___AGGC_AAUGC_ACU______UCCAGACUUU\n3'-AUU...UAAGU___UUU____U_________UCAUUU__________CUAUC...AUG-5'\n_____________|____________________________________|\n_____________64___________________________________28\n |
286 -- 292 |
30 -- 36 |
-30.8342 kcal/mol |
7.36676 kcal/mol |
10.8887 kcal/mol |
263 294@LB@ | |@LB@5'-CCG...CCGCU U C UUU ACCGUAA-3'@LB@ GCC UCCG UUGCG UGA AGGUCUGGAA@LB@ ||| |||| ||:|| ||| |||||||:||@LB@ CGG AGGC AAUGC ACU UCCAGACUUU@LB@3'-AUU...UAAGU UUU U UCAUUU CUAUC...AUG-5'@LB@ | |@LB@ 64 28@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -30.8342 kcal/mol@LB@Unfolding Energy - mRNA 7.36676 kcal/mol@LB@Unfolding Energy - sRNA 10.8887 kcal/mol@LB@@LB@Position - mRNA 264 -- 293@LB@Position - sRNA 29 -- 63@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 17 |
5.719e-05 |
0.01183 |
b3675 |
yidG |
-12.05 |
0.010096 |
82 -- 130 |
1 -- 56 |
inner membrane protein |
|
_____________81_____________________________________________________________131\n_____________|______________________________________________________________|\n5'-CGC...UUGCG_________CAAU_A_____CGAUGC__________GG________________________ACCAA...CGU-3'\n______________CUGGUUACG____G_AAAAG______GUCUGAAAGA___________ACCU____GCCCUAC\n______________|:|:|||||____|_|||||______||||||||||___________||||____:||||||\n______________GGCUAAUGC____C_UUUUC______CAGACUUUCU___________UGGA____UGGGAUG\n3'-AUU...GUUUA_________ACUU_A_____________________AUCUUGUAGAA____GACA_______-5'\n_____________|_____________________________________________________________|\n_____________57____________________________________________________________1\n |
124 -- 130 |
1 -- 7 |
-38.348 kcal/mol |
13.6157 kcal/mol |
12.7022 kcal/mol |
81 131@LB@ | |@LB@5'-CGC...UUGCG CAAU A CGAUGC GG ACCAA...CGU-3'@LB@ CUGGUUACG G AAAAG GUCUGAAAGA ACCU GCCCUAC@LB@ |:|:||||| | ||||| |||||||||| |||| :||||||@LB@ GGCUAAUGC C UUUUC CAGACUUUCU UGGA UGGGAUG@LB@3'-AUU...GUUUA ACUU A AUCUUGUAGAA GACA -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -38.348 kcal/mol@LB@Unfolding Energy - mRNA 13.6157 kcal/mol@LB@Unfolding Energy - sRNA 12.7022 kcal/mol@LB@@LB@Position - mRNA 82 -- 130@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 18 |
6.719e-05 |
0.01313 |
b2935 |
tktA |
-10.85 |
0.025018 |
263 -- 275 |
52 -- 64 |
transketolase 1 thiamine triphosphate-binding |
|
_____________262___________276\n_____________|_____________|\n5'-AAG...CAGAA_____________CACCC...UGG-3'\n______________AGCCAAAUCCGGU\n______________|||||||||||:|\n______________UCGGUUUAGGCUA\n3'-AUU...AUAAG_____________AUGCA...AUG-5'\n_____________|_____________|\n_____________65____________51\n |
269 -- 275 |
52 -- 58 |
-21.1603 kcal/mol |
4.16811 kcal/mol |
6.16128 kcal/mol |
262 276@LB@ | |@LB@5'-AAG...CAGAA CACCC...UGG-3'@LB@ AGCCAAAUCCGGU@LB@ |||||||||||:|@LB@ UCGGUUUAGGCUA@LB@3'-AUU...AUAAG AUGCA...AUG-5'@LB@ | |@LB@ 65 51@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -21.1603 kcal/mol@LB@Unfolding Energy - mRNA 4.16811 kcal/mol@LB@Unfolding Energy - sRNA 6.16128 kcal/mol@LB@@LB@Position - mRNA 263 -- 275@LB@Position - sRNA 52 -- 64@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 19 |
8.831e-05 |
0.01635 |
b3389 |
aroB |
-10.54 |
0.031183 |
4 -- 17 |
42 -- 56 |
3-dehydroquinate synthase |
|
_____________3_______________18\n_____________|_______________|\n________5'-ACA___CC__________UCUGG...CGG-3'\n______________CCG___GCGUGAAGU\n______________|||___:||||||||\n______________GGC___UGCACUUCA\n3'-AUU...GUUUA___UAA_________UUUUC...AUG-5'\n_____________|_______________|\n_____________57______________41\n |
11 -- 17 |
42 -- 48 |
-15.9415 kcal/mol |
2.13198 kcal/mol |
3.27911 kcal/mol |
3 18@LB@ | |@LB@ 5'-ACA CC UCUGG...CGG-3'@LB@ CCG GCGUGAAGU@LB@ ||| :||||||||@LB@ GGC UGCACUUCA@LB@3'-AUU...GUUUA UAA UUUUC...AUG-5'@LB@ | |@LB@ 57 41@LB@@LB@@LB@Energy -10.54 kcal/mol@LB@Hybridization Energy -15.9415 kcal/mol@LB@Unfolding Energy - mRNA 2.13198 kcal/mol@LB@Unfolding Energy - sRNA 3.27911 kcal/mol@LB@@LB@Position - mRNA 4 -- 17@LB@Position - sRNA 42 -- 56@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 20 |
9.41e-05 |
0.01655 |
b0721 |
sdhC |
-12.56 |
0.006704 |
146 -- 157 |
4 -- 15 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________145__________158\n_____________|____________|\n5'-UCC...AGUUA____________GUAGU...CCG-3'\n______________ACCUCUGUGCCC\n______________||||||||:|||\n______________UGGAGACAUGGG\n3'-AUU...UAGAA____________AUG-5'\n_____________|____________|\n_____________16___________3\n |
151 -- 157 |
4 -- 10 |
-23.3451 kcal/mol |
4.99288 kcal/mol |
5.82084 kcal/mol |
145 158@LB@ | |@LB@5'-UCC...AGUUA GUAGU...CCG-3'@LB@ ACCUCUGUGCCC@LB@ ||||||||:|||@LB@ UGGAGACAUGGG@LB@3'-AUU...UAGAA AUG-5'@LB@ | |@LB@ 16 3@LB@@LB@@LB@Energy -12.56 kcal/mol@LB@Hybridization Energy -23.3451 kcal/mol@LB@Unfolding Energy - mRNA 4.99288 kcal/mol@LB@Unfolding Energy - sRNA 5.82084 kcal/mol@LB@@LB@Position - mRNA 146 -- 157@LB@Position - sRNA 4 -- 15@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 4 -- 10@LB@ |
