1 |
0 |
0 |
b3441 |
yhhY |
-117.23 |
0.000000 |
1 -- 79 |
1 -- 79 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________GAGAC...UGC-3'\n______________CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG\n3'-UUU...GUCGU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
73 -- 79 |
1 -- 7 |
-169.876 kcal/mol |
26.9228 kcal/mol |
25.7255 kcal/mol |
1 80@LB@ | |@LB@ 5'- GAGAC...UGC-3'@LB@ CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG@LB@3'-UUU...GUCGU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -117.23 kcal/mol@LB@Hybridization Energy -169.876 kcal/mol@LB@Unfolding Energy - mRNA 26.9228 kcal/mol@LB@Unfolding Energy - sRNA 25.7255 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 1 -- 7@LB@ |
2 |
1.064e-05 |
0.01787 |
b1683 |
sufB |
-21.37 |
0.002185 |
208 -- 233 |
38 -- 66 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________207___________________________234\n_____________|_____________________________|\n5'-GUU...GUCUC________________C____________AAAAC...AGC-3'\n______________GUAAUACU_GAAGCAA__UGA_CGAUGUC\n______________||||||||_|||||||__|||_|:|||||\n______________CAUUAUGA_CUUCGUU__ACU_GUUACAG\n3'-UUU...CGAUU________C_______AC___C_______CACGA...GCG-5'\n_____________|_____________________________|\n_____________67____________________________37\n |
227 -- 233 |
38 -- 44 |
-29.4313 kcal/mol |
4.7571 kcal/mol |
3.30527 kcal/mol |
207 234@LB@ | |@LB@5'-GUU...GUCUC C AAAAC...AGC-3'@LB@ GUAAUACU GAAGCAA UGA CGAUGUC@LB@ |||||||| ||||||| ||| |:|||||@LB@ CAUUAUGA CUUCGUU ACU GUUACAG@LB@3'-UUU...CGAUU C AC C CACGA...GCG-5'@LB@ | |@LB@ 67 37@LB@@LB@@LB@Energy -21.37 kcal/mol@LB@Hybridization Energy -29.4313 kcal/mol@LB@Unfolding Energy - mRNA 4.7571 kcal/mol@LB@Unfolding Energy - sRNA 3.30527 kcal/mol@LB@@LB@Position - mRNA 208 -- 233@LB@Position - sRNA 38 -- 66@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 38 -- 44@LB@ |
3 |
2.244e-05 |
0.02513 |
b1107 |
nagZ |
-17.54 |
0.010122 |
191 -- 218 |
37 -- 58 |
beta N-acetyl-glucosaminidase |
|
_____________190__________________________219\n_____________|____________________________|\n5'-AUU...AAUAA___G_________GGUCC__________GAUGU...CGC-3'\n______________GGA_AGCAGUGUG_____AGUAAUGUUG\n______________|||_||||:||||_____||:|||||:|\n______________CCU_UCGUUACAC_____UCGUUACAGC\n3'-UUU...UAUGA____________________________ACGAA...GCG-5'\n_____________|____________________________|\n_____________59___________________________36\n |
212 -- 218 |
37 -- 43 |
-27.3301 kcal/mol |
6.56806 kcal/mol |
3.22699 kcal/mol |
190 219@LB@ | |@LB@5'-AUU...AAUAA G GGUCC GAUGU...CGC-3'@LB@ GGA AGCAGUGUG AGUAAUGUUG@LB@ ||| ||||:|||| ||:|||||:|@LB@ CCU UCGUUACAC UCGUUACAGC@LB@3'-UUU...UAUGA ACGAA...GCG-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -27.3301 kcal/mol@LB@Unfolding Energy - mRNA 6.56806 kcal/mol@LB@Unfolding Energy - sRNA 3.22699 kcal/mol@LB@@LB@Position - mRNA 191 -- 218@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 37 -- 43@LB@ |
4 |
0.0001495 |
0.1256 |
b3867 |
hemN |
-18.37 |
0.007265 |
188 -- 239 |
3 -- 58 |
coproporphyrinogen III oxidase SAM and NAD(P)H dependent oxygen-independent |
|
_____________187_________________________________________________________240\n_____________|___________________________________________________________|\n5'-CGG...CCAUC_____G___________________A_____CAAA____ACU___A___GGC_______CAGAA...CAG-3'\n______________GGAAG_A__GUGAGC_AUGUC_UGU___CAG_____UCG___GGG_UCU___CCUGAUC\n______________|||||_|__||||||_|||||_||:___|||_____:||___|||_|||___|||||||\n______________CCUUC_U__CACUCG_UACAG_ACG___GUC_____GGC___CCC_AGA___GGACUAG\n3'-UUU...UAUGA_____G_UA______U_____C___AAA___CAAGA___GCU_______A_________CG-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
233 -- 239 |
3 -- 9 |
-47.0013 kcal/mol |
14.5919 kcal/mol |
14.0436 kcal/mol |
187 240@LB@ | |@LB@5'-CGG...CCAUC G A CAAA ACU A GGC CAGAA...CAG-3'@LB@ GGAAG A GUGAGC AUGUC UGU CAG UCG GGG UCU CCUGAUC@LB@ ||||| | |||||| ||||| ||: ||| :|| ||| ||| |||||||@LB@ CCUUC U CACUCG UACAG ACG GUC GGC CCC AGA GGACUAG@LB@3'-UUU...UAUGA G UA U C AAA CAAGA GCU A CG-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -18.37 kcal/mol@LB@Hybridization Energy -47.0013 kcal/mol@LB@Unfolding Energy - mRNA 14.5919 kcal/mol@LB@Unfolding Energy - sRNA 14.0436 kcal/mol@LB@@LB@Position - mRNA 188 -- 239@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 3 -- 9@LB@ |
5 |
0.0002772 |
0.1521 |
b3365 |
nirB |
-15.55 |
0.022306 |
192 -- 212 |
38 -- 57 |
nitrite reductase large subunit NAD(P)H-binding |
|
_____________191___________________213\n_____________|_____________________|\n5'-AUC...AAAUC_______AAA_______A___AGACU...UUA-3'\n______________GAGGCAA___UGAGCAA_GUC\n______________||:||||___|||||||_|||\n______________CUUCGUU___ACUCGUU_CAG\n3'-UUU...AUGAC_______AC________A___CACGA...GCG-5'\n_____________|_____________________|\n_____________58____________________37\n |
202 -- 208 |
42 -- 48 |
-22.0527 kcal/mol |
3.28811 kcal/mol |
3.2161 kcal/mol |
191 213@LB@ | |@LB@5'-AUC...AAAUC AAA A AGACU...UUA-3'@LB@ GAGGCAA UGAGCAA GUC@LB@ ||:|||| ||||||| |||@LB@ CUUCGUU ACUCGUU CAG@LB@3'-UUU...AUGAC AC A CACGA...GCG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -22.0527 kcal/mol@LB@Unfolding Energy - mRNA 3.28811 kcal/mol@LB@Unfolding Energy - sRNA 3.2161 kcal/mol@LB@@LB@Position - mRNA 192 -- 212@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
6 |
0.0003052 |
0.1521 |
b4255 |
rraB |
-18.72 |
0.006315 |
136 -- 158 |
39 -- 61 |
protein inhibitor of RNase E |
|
_____________135_____________________159\n_____________|_______________________|\n5'-GAG...ACAAA_G____________C________GUGAC...CCA-3'\n______________G_UGGAGGCAAUGU_AGUGGUGU\n______________:_||||:|||||||_||:::|||\n______________U_ACCUUCGUUACA_UCGUUACA\n3'-UUU...CAUUA_G____________C________GCACG...GCG-5'\n_____________|_______________________|\n_____________62______________________38\n |
152 -- 158 |
39 -- 45 |
-27.5113 kcal/mol |
5.49395 kcal/mol |
3.30099 kcal/mol |
135 159@LB@ | |@LB@5'-GAG...ACAAA G C GUGAC...CCA-3'@LB@ G UGGAGGCAAUGU AGUGGUGU@LB@ : ||||:||||||| ||:::|||@LB@ U ACCUUCGUUACA UCGUUACA@LB@3'-UUU...CAUUA G C GCACG...GCG-5'@LB@ | |@LB@ 62 38@LB@@LB@@LB@Energy -18.72 kcal/mol@LB@Hybridization Energy -27.5113 kcal/mol@LB@Unfolding Energy - mRNA 5.49395 kcal/mol@LB@Unfolding Energy - sRNA 3.30099 kcal/mol@LB@@LB@Position - mRNA 136 -- 158@LB@Position - sRNA 39 -- 61@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 39 -- 45@LB@ |
7 |
0.0003168 |
0.1521 |
b0894 |
dmsA |
-18.01 |
0.008378 |
163 -- 184 |
42 -- 62 |
dimethyl sulfoxide reductase anaerobic subunit A |
b1588 b1587 |
_____________162____________________185\n_____________|______________________|\n5'-CUU...UUUGU________U____C________GCUUG...GCG-3'\n______________UACUGGAA_CAAU_GUGAGCAA\n______________||||||||_||||_||||||||\n______________AUGACCUU_GUUA_CACUCGUU\n3'-UUU...UCAUU________C_____________ACAGC...GCG-5'\n_____________|______________________|\n_____________63_____________________41\n |
178 -- 184 |
42 -- 48 |
-26.0413 kcal/mol |
4.73109 kcal/mol |
3.30151 kcal/mol |
162 185@LB@ | |@LB@5'-CUU...UUUGU U C GCUUG...GCG-3'@LB@ UACUGGAA CAAU GUGAGCAA@LB@ |||||||| |||| ||||||||@LB@ AUGACCUU GUUA CACUCGUU@LB@3'-UUU...UCAUU C ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -18.01 kcal/mol@LB@Hybridization Energy -26.0413 kcal/mol@LB@Unfolding Energy - mRNA 4.73109 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 163 -- 184@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 42 -- 48@LB@ |
8 |
0.0004259 |
0.161 |
b4019 |
metH |
-17.34 |
0.010954 |
191 -- 208 |
42 -- 58 |
homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent |
|
_____________190________________209\n_____________|__________________|\n5'-UGA...GUGUC______A___________CAAAG...ACG-3'\n______________GGGAGC_AGUGUGAGCAG\n______________||:|||_|:||||||||:\n______________CCUUCG_UUACACUCGUU\n3'-UUU...UAUGA__________________ACAGC...GCG-5'\n_____________|__________________|\n_____________59_________________41\n |
202 -- 208 |
42 -- 48 |
-25.1819 kcal/mol |
4.63502 kcal/mol |
3.2101 kcal/mol |
190 209@LB@ | |@LB@5'-UGA...GUGUC A CAAAG...ACG-3'@LB@ GGGAGC AGUGUGAGCAG@LB@ ||:||| |:||||||||:@LB@ CCUUCG UUACACUCGUU@LB@3'-UUU...UAUGA ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -17.34 kcal/mol@LB@Hybridization Energy -25.1819 kcal/mol@LB@Unfolding Energy - mRNA 4.63502 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 191 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
9 |
0.0004314 |
0.161 |
b1647 |
ydhF |
-17.39 |
0.010703 |
25 -- 48 |
37 -- 61 |
putative oxidoreductase |
|
_____________24________________________49\n_____________|_________________________|\n5'-UUC...UUUUA___________AA_________G__AAAAA...AGC-3'\n______________ACUGGAA_UAA__UGAGCGAUG_CG\n______________|||||||_:||__|||||:|||_||\n______________UGACCUU_GUU__ACUCGUUAC_GC\n3'-UUU...CAUUA_______C___AC_________A__ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
39 -- 45 |
40 -- 46 |
-25.2966 kcal/mol |
4.60014 kcal/mol |
3.30158 kcal/mol |
24 49@LB@ | |@LB@5'-UUC...UUUUA AA G AAAAA...AGC-3'@LB@ ACUGGAA UAA UGAGCGAUG CG@LB@ ||||||| :|| |||||:||| ||@LB@ UGACCUU GUU ACUCGUUAC GC@LB@3'-UUU...CAUUA C AC A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -17.39 kcal/mol@LB@Hybridization Energy -25.2966 kcal/mol@LB@Unfolding Energy - mRNA 4.60014 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 25 -- 48@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 40 -- 46@LB@ |
10 |
0.0006218 |
0.2043 |
b1423 |
ydcJ |
-15.65 |
0.021404 |
209 -- 256 |
38 -- 84 |
putative metalloenzyme |
|
_____________208__________________________________________________257\n_____________|____________________________________________________|\n5'-GAA...GCGAA_______A_______A____AUUCG___________UUUC_CA_________AGCCA...UGG-3'\n______________CAGCAUC_CGGC_GG_UGAG_______GGAA_CAGU____G__GGCAAUGUC\n______________|||||:|_||||_||_|:||_______||||_||:|____|__:||||||||\n______________GUCGUGG_GCCG_CC_AUUC_______CCUU_GUUA____C__UCGUUACAG\n_____3'-UUUUCG____________A__G____AUUAUGA____C_________AC_________CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________85___________________________________________________37\n |
250 -- 256 |
38 -- 44 |
-41.5422 kcal/mol |
10.9926 kcal/mol |
14.897 kcal/mol |
208 257@LB@ | |@LB@5'-GAA...GCGAA A A AUUCG UUUC CA AGCCA...UGG-3'@LB@ CAGCAUC CGGC GG UGAG GGAA CAGU G GGCAAUGUC@LB@ |||||:| |||| || |:|| |||| ||:| | :||||||||@LB@ GUCGUGG GCCG CC AUUC CCUU GUUA C UCGUUACAG@LB@ 3'-UUUUCG A G AUUAUGA C AC CACGA...GCG-5'@LB@ | |@LB@ 85 37@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -41.5422 kcal/mol@LB@Unfolding Energy - mRNA 10.9926 kcal/mol@LB@Unfolding Energy - sRNA 14.897 kcal/mol@LB@@LB@Position - mRNA 209 -- 256@LB@Position - sRNA 38 -- 84@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 38 -- 44@LB@ |
11 |
0.000669 |
0.2043 |
b4154 |
frdA |
-13.85 |
0.043591 |
184 -- 204 |
34 -- 53 |
anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
|
_____________183___________________205\n_____________|_____________________|\n5'-UAA...AAAAA____CUG___G__________AAACC...UCG-3'\n______________CAAU___GAG_AAUGUCGUGC\n______________||||___|||_||||||||||\n______________GUUA___CUC_UUACAGCACG\n3'-UUU...CCUUC____CA____G__________AAAGU...GCG-5'\n_____________|_____________________|\n_____________54____________________33\n |
198 -- 204 |
34 -- 40 |
-24.005 kcal/mol |
3.86794 kcal/mol |
6.28724 kcal/mol |
183 205@LB@ | |@LB@5'-UAA...AAAAA CUG G AAACC...UCG-3'@LB@ CAAU GAG AAUGUCGUGC@LB@ |||| ||| ||||||||||@LB@ GUUA CUC UUACAGCACG@LB@3'-UUU...CCUUC CA G AAAGU...GCG-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -24.005 kcal/mol@LB@Unfolding Energy - mRNA 3.86794 kcal/mol@LB@Unfolding Energy - sRNA 6.28724 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 34 -- 40@LB@ |
12 |
0.0007887 |
0.2153 |
b3981 |
secE |
-14.50 |
0.033700 |
225 -- 262 |
36 -- 90 |
preprotein translocase membrane subunit |
|
_____________224_____________________________________________________263\n_____________|_______________________________________________________|\n5'-UAA...CUCAA______G___________________________________A____________UGUGG...ACU-3'\n______________GGAAGC_GGCGC__GGC_____________CUGGAAGCGAUG__AGUGG_GUCGU\n______________::||||_:||:|__|||_____________||||||||:|||__||:::_|||||\n______________UUUUCG_UCGUG__CCG_____________GACCUUCGUUAC__UCGUU_CAGCA\n___________3'-______G_____GG___ACCGAUUCAUUAU____________AC_____A_____CGAAA...GCG-5'\n______________|______________________________________________________|\n______________90_____________________________________________________35\n |
245 -- 251 |
49 -- 55 |
-44.4001 kcal/mol |
14.9847 kcal/mol |
14.9108 kcal/mol |
224 263@LB@ | |@LB@5'-UAA...CUCAA G A UGUGG...ACU-3'@LB@ GGAAGC GGCGC GGC CUGGAAGCGAUG AGUGG GUCGU@LB@ ::|||| :||:| ||| ||||||||:||| ||::: |||||@LB@ UUUUCG UCGUG CCG GACCUUCGUUAC UCGUU CAGCA@LB@ 3'- G GG ACCGAUUCAUUAU AC A CGAAA...GCG-5'@LB@ | |@LB@ 90 35@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -44.4001 kcal/mol@LB@Unfolding Energy - mRNA 14.9847 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 225 -- 262@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 49 -- 55@LB@ |
13 |
0.000833 |
0.2153 |
b1531 |
marA |
-8.74 |
0.292618 |
190 -- 205 |
38 -- 57 |
multiple antibiotic resistance transcriptional regulator |
|
_____________189__________________206\n_____________|____________________|\n5'-AAG...AAAAA____________________CAGAC...AGC-3'\n______________GAGGUA___UGA_CGAUGUC\n______________||:|:|___|||_|:|||||\n______________CUUCGU___ACU_GUUACAG\n3'-UUU...AUGAC______UAC___C_______CACGA...GCG-5'\n_____________|____________________|\n_____________58___________________37\n |
199 -- 205 |
38 -- 44 |
-15.3925 kcal/mol |
3.44101 kcal/mol |
3.2161 kcal/mol |
189 206@LB@ | |@LB@5'-AAG...AAAAA CAGAC...AGC-3'@LB@ GAGGUA UGA CGAUGUC@LB@ ||:|:| ||| |:|||||@LB@ CUUCGU ACU GUUACAG@LB@3'-UUU...AUGAC UAC C CACGA...GCG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -15.3925 kcal/mol@LB@Unfolding Energy - mRNA 3.44101 kcal/mol@LB@Unfolding Energy - sRNA 3.2161 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
14 |
0.0009144 |
0.2195 |
b0181 |
lpxA |
-19.56 |
0.004514 |
124 -- 202 |
1 -- 90 |
UDP-N-acetylglucosamine acetyltransferase |
|
_____________123_____________________________________________________________________________________________203\n_____________|_______________________________________________________________________________________________|\n5'-CGG...UUUUA_____G_U_________CGA____A___________C_______C_________________CG___________G_______________A___GAUUG...GAC-3'\n______________AAGGG_U_GC_UCUGGU___UGGU_AAGUAGU_UUG_GAAGCAA___GA_UGAUGU_GUGCU__UAG_____CCG_GAGG_____CCUGAU_CGU\n______________||::|_:_||_:|:||:___|||:_|||||:|_:||_|||||||___||_::||||_|||||__:||_____|||_||||_____||||||_||:\n______________UUUUC_G_CG_GGGCCG___ACCG_UUCAUUA_GAC_CUUCGUU___CU_GUUACA_CACGA__GUC_____GGC_CUCC_____GGACUA_GCG\n___________3'-_____G_U__U_____________A_______U___________ACA__C______G_____AA___CAAGA___G____CAGAA__________-5'\n______________|_____________________________________________________________________________________________|\n______________90____________________________________________________________________________________________1\n |
159 -- 165 |
51 -- 57 |
-68.8911 kcal/mol |
23.6052 kcal/mol |
25.7298 kcal/mol |
123 203@LB@ | |@LB@5'-CGG...UUUUA G U CGA A C C CG G A GAUUG...GAC-3'@LB@ AAGGG U GC UCUGGU UGGU AAGUAGU UUG GAAGCAA GA UGAUGU GUGCU UAG CCG GAGG CCUGAU CGU@LB@ ||::| : || :|:||: |||: |||||:| :|| ||||||| || ::|||| ||||| :|| ||| |||| |||||| ||:@LB@ UUUUC G CG GGGCCG ACCG UUCAUUA GAC CUUCGUU CU GUUACA CACGA GUC GGC CUCC GGACUA GCG@LB@ 3'- G U U A U ACA C G AA CAAGA G CAGAA -5'@LB@ | |@LB@ 90 1@LB@@LB@@LB@Energy -19.56 kcal/mol@LB@Hybridization Energy -68.8911 kcal/mol@LB@Unfolding Energy - mRNA 23.6052 kcal/mol@LB@Unfolding Energy - sRNA 25.7298 kcal/mol@LB@@LB@Position - mRNA 124 -- 202@LB@Position - sRNA 1 -- 90@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
15 |
0.001024 |
0.2294 |
b2822 |
recC |
-16.38 |
0.016046 |
234 -- 264 |
37 -- 63 |
exonuclease V (RecBCD complex) gamma chain |
|
_____________233______________________________265\n_____________|________________________________|\n5'-AGU...UGGAC___________GUU_________UUAU_____AACGC...AGA-3'\n______________GUGCUGGAAGC___GAUG_GAGU____UGUCG\n______________:|:||||||||___:|||_|||:____|||||\n______________UAUGACCUUCG___UUAC_CUCG____ACAGC\n3'-UUU...UUCAU__________________A____UU_______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
238 -- 244 |
53 -- 59 |
-30.8262 kcal/mol |
11.1454 kcal/mol |
3.30267 kcal/mol |
233 265@LB@ | |@LB@5'-AGU...UGGAC GUU UUAU AACGC...AGA-3'@LB@ GUGCUGGAAGC GAUG GAGU UGUCG@LB@ :|:|||||||| :||| |||: |||||@LB@ UAUGACCUUCG UUAC CUCG ACAGC@LB@3'-UUU...UUCAU A UU ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -30.8262 kcal/mol@LB@Unfolding Energy - mRNA 11.1454 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 234 -- 264@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 53 -- 59@LB@ |
16 |
0.00116 |
0.2406 |
b0221 |
fadE |
-14.73 |
0.030789 |
87 -- 104 |
36 -- 53 |
acyl coenzyme A dehydrogenase |
|
_____________86_________________105\n_____________|__________________|\n5'-GUG...AGCAA__________UU______AAUUA...GGA-3'\n______________CAAUGUGAGC__UGUUGU\n______________||||||||||__|||:||\n______________GUUACACUCG__ACAGCA\n3'-UUU...CCUUC__________UU______CGAAA...GCG-5'\n_____________|__________________|\n_____________54_________________35\n |
90 -- 96 |
44 -- 50 |
-23.2381 kcal/mol |
5.2956 kcal/mol |
3.20883 kcal/mol |
86 105@LB@ | |@LB@5'-GUG...AGCAA UU AAUUA...GGA-3'@LB@ CAAUGUGAGC UGUUGU@LB@ |||||||||| |||:||@LB@ GUUACACUCG ACAGCA@LB@3'-UUU...CCUUC UU CGAAA...GCG-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.2381 kcal/mol@LB@Unfolding Energy - mRNA 5.2956 kcal/mol@LB@Unfolding Energy - sRNA 3.20883 kcal/mol@LB@@LB@Position - mRNA 87 -- 104@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 44 -- 50@LB@ |
17 |
0.001256 |
0.2406 |
b2496 |
hda |
-13.91 |
0.042623 |
63 -- 79 |
52 -- 68 |
ATPase regulatory factor involved in DnaA inactivation |
|
_____________62________________80\n_____________|_________________|\n5'-GAC...UGAAG_____________C___GAAGA...CGC-3'\n______________AAGUGGUGCUGGA_GCA\n______________||||::|:|||||_|||\n______________UUCAUUAUGACCU_CGU\n3'-UUU...ACCGA_____________U___UACAC...GCG-5'\n_____________|_________________|\n_____________69________________51\n |
69 -- 75 |
56 -- 62 |
-21.6495 kcal/mol |
4.84804 kcal/mol |
2.8943 kcal/mol |
62 80@LB@ | |@LB@5'-GAC...UGAAG C GAAGA...CGC-3'@LB@ AAGUGGUGCUGGA GCA@LB@ ||||::|:||||| |||@LB@ UUCAUUAUGACCU CGU@LB@3'-UUU...ACCGA U UACAC...GCG-5'@LB@ | |@LB@ 69 51@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -21.6495 kcal/mol@LB@Unfolding Energy - mRNA 4.84804 kcal/mol@LB@Unfolding Energy - sRNA 2.8943 kcal/mol@LB@@LB@Position - mRNA 63 -- 79@LB@Position - sRNA 52 -- 68@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 56 -- 62@LB@ |
18 |
0.001289 |
0.2406 |
b3930 |
menA |
-10.08 |
0.182848 |
73 -- 82 |
42 -- 51 |
1 4-dihydroxy-2-naphthoate octaprenyltransferase |
|
_____________72_________83\n_____________|__________|\n5'-AGC...AGAUU__________ACAUC...CGC-3'\n______________AUGUGAGCAA\n______________||||||||||\n______________UACACUCGUU\n3'-UUU...UUCGU__________ACAGC...GCG-5'\n_____________|__________|\n_____________52_________41\n |
76 -- 82 |
42 -- 48 |
-14.1762 kcal/mol |
2.92742 kcal/mol |
1.16834 kcal/mol |
72 83@LB@ | |@LB@5'-AGC...AGAUU ACAUC...CGC-3'@LB@ AUGUGAGCAA@LB@ ||||||||||@LB@ UACACUCGUU@LB@3'-UUU...UUCGU ACAGC...GCG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -14.1762 kcal/mol@LB@Unfolding Energy - mRNA 2.92742 kcal/mol@LB@Unfolding Energy - sRNA 1.16834 kcal/mol@LB@@LB@Position - mRNA 73 -- 82@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 42 -- 48@LB@ |
19 |
0.001375 |
0.2431 |
b0722 |
sdhD |
-16.32 |
0.016452 |
168 -- 195 |
12 -- 41 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________167_____________________________196\n_____________|_______________________________|\n5'-UCC...AUUAC_____________C_____________A___CUCGU...UGG-3'\n______________UGUCGUGCUUUCA__UUCU_CGC_AGG_GUC\n______________|||||||||||||__||||_|||_|||_|||\n______________ACAGCACGAAAGU__AAGA_GCG_UCC_CAG\n3'-UUU...UCGUU_____________CC____G___C_______AAGGA...GCG-5'\n_____________|_______________________________|\n_____________42______________________________11\n |
174 -- 180 |
29 -- 35 |
-35.0246 kcal/mol |
7.60237 kcal/mol |
11.1071 kcal/mol |
167 196@LB@ | |@LB@5'-UCC...AUUAC C A CUCGU...UGG-3'@LB@ UGUCGUGCUUUCA UUCU CGC AGG GUC@LB@ ||||||||||||| |||| ||| ||| |||@LB@ ACAGCACGAAAGU AAGA GCG UCC CAG@LB@3'-UUU...UCGUU CC G C AAGGA...GCG-5'@LB@ | |@LB@ 42 11@LB@@LB@@LB@Energy -16.32 kcal/mol@LB@Hybridization Energy -35.0246 kcal/mol@LB@Unfolding Energy - mRNA 7.60237 kcal/mol@LB@Unfolding Energy - sRNA 11.1071 kcal/mol@LB@@LB@Position - mRNA 168 -- 195@LB@Position - sRNA 12 -- 41@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 29 -- 35@LB@ |
20 |
0.001583 |
0.2659 |
b4547 |
ypfN |
-17.32 |
0.011014 |
197 -- 242 |
38 -- 88 |
putative membrane protein UPF0370 family |
|
_____________196_________________________________________________243\n_____________|___________________________________________________|\n5'-UGA...GAAAU____AU_G______________A__U__G____UUCUG_____U_______UUUUU...AGA-3'\n______________AAGC__G_A_CUGGCUGGCUAA_UA_UG_UGGA______GUGA____UGUC\n______________||||__|_|_|:||||||||||_||_|:_||||______||||____||||\n______________UUCG__C_U_GGCCGACCGAUU_AU_AU_ACCU______CACU____ACAG\n_________3'-UU____GU_G_G____________C__U__G____UCGUUA____CGUU____CACGA...GCG-5'\n_____________|___________________________________________________|\n_____________89__________________________________________________37\n |
211 -- 217 |
67 -- 73 |
-42.3158 kcal/mol |
10.0822 kcal/mol |
14.9106 kcal/mol |
196 243@LB@ | |@LB@5'-UGA...GAAAU AU G A U G UUCUG U UUUUU...AGA-3'@LB@ AAGC G A CUGGCUGGCUAA UA UG UGGA GUGA UGUC@LB@ |||| | | |:|||||||||| || |: |||| |||| ||||@LB@ UUCG C U GGCCGACCGAUU AU AU ACCU CACU ACAG@LB@ 3'-UU GU G G C U G UCGUUA CGUU CACGA...GCG-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -17.32 kcal/mol@LB@Hybridization Energy -42.3158 kcal/mol@LB@Unfolding Energy - mRNA 10.0822 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 197 -- 242@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 67 -- 73@LB@ |
21 |
0.001761 |
0.2682 |
b2988 |
gss |
-16.20 |
0.017239 |
12 -- 42 |
38 -- 68 |
glutathionylspermidine amidase and glutathionylspermidine synthetase |
|
_____________11________________________________43\n_____________|_________________________________|\n5'-AGU...CUUCU________G__UU____________________ACUUG...UCG-3'\n______________GAGUGGUA_UG__GAAGCAGUGU_AGCAG_GUC\n______________:|||::||_||__||||||:|||_||||:_|||\n______________UUCAUUAU_AC__CUUCGUUACA_UCGUU_CAG\n3'-UUU...ACCGA________G______________C_____A___CACGA...GCG-5'\n_____________|_________________________________|\n_____________69________________________________37\n |
28 -- 34 |
48 -- 54 |
-32.4779 kcal/mol |
12.9749 kcal/mol |
3.30528 kcal/mol |
11 43@LB@ | |@LB@5'-AGU...CUUCU G UU ACUUG...UCG-3'@LB@ GAGUGGUA UG GAAGCAGUGU AGCAG GUC@LB@ :|||::|| || ||||||:||| ||||: |||@LB@ UUCAUUAU AC CUUCGUUACA UCGUU CAG@LB@3'-UUU...ACCGA G C A CACGA...GCG-5'@LB@ | |@LB@ 69 37@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -32.4779 kcal/mol@LB@Unfolding Energy - mRNA 12.9749 kcal/mol@LB@Unfolding Energy - sRNA 3.30528 kcal/mol@LB@@LB@Position - mRNA 12 -- 42@LB@Position - sRNA 38 -- 68@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 48 -- 54@LB@ |
22 |
0.001794 |
0.2682 |
b1992 |
cobS |
-11.39 |
0.112398 |
162 -- 208 |
42 -- 83 |
cobalamin synthase |
|
_____________161________________________________________________209\n_____________|__________________________________________________|\n5'-GAG...AAUGA______________GGUUUCG______________AAAUCAAA_______AUUAU...GUA-3'\n______________AGUAU__GGCUGGU_______GGUAUUGG_AGUAA________UGAGUAA\n______________||:|:__||||||:_______::||:|||_||:||________||||:||\n______________UCGUG__CCGACCG_______UUAUGACC_UCGUU________ACUCGUU\n____3'-UUUUCGG_____GG_______AUUCA__________U_____AC_____________ACAGC...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________41\n |
202 -- 208 |
42 -- 48 |
-33.2748 kcal/mol |
6.99193 kcal/mol |
14.8879 kcal/mol |
161 209@LB@ | |@LB@5'-GAG...AAUGA GGUUUCG AAAUCAAA AUUAU...GUA-3'@LB@ AGUAU GGCUGGU GGUAUUGG AGUAA UGAGUAA@LB@ ||:|: ||||||: ::||:||| ||:|| ||||:||@LB@ UCGUG CCGACCG UUAUGACC UCGUU ACUCGUU@LB@ 3'-UUUUCGG GG AUUCA U AC ACAGC...GCG-5'@LB@ | |@LB@ 84 41@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -33.2748 kcal/mol@LB@Unfolding Energy - mRNA 6.99193 kcal/mol@LB@Unfolding Energy - sRNA 14.8879 kcal/mol@LB@@LB@Position - mRNA 162 -- 208@LB@Position - sRNA 42 -- 83@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
23 |
0.001852 |
0.2682 |
b4059 |
ssb |
-13.81 |
0.044308 |
47 -- 78 |
34 -- 64 |
single-stranded DNA-binding protein |
|
_____________46_______________________________79\n_____________|________________________________|\n5'-AUC...UAUAC__________U___UUACCC_G__________AACAA...UUA-3'\n______________AGUAUUGGAA_GCA______G_AGUGUUGUGU\n______________|:||:|||||_|||______|_|:|||:|||:\n______________UUAUGACCUU_CGU______C_UUACAGCACG\n3'-UUU...AUUCA______________UACACU_G__________AAAGU...GCG-5'\n_____________|________________________________|\n_____________65_______________________________33\n |
72 -- 78 |
34 -- 40 |
-28.8532 kcal/mol |
8.27543 kcal/mol |
6.76952 kcal/mol |
46 79@LB@ | |@LB@5'-AUC...UAUAC U UUACCC G AACAA...UUA-3'@LB@ AGUAUUGGAA GCA G AGUGUUGUGU@LB@ |:||:||||| ||| | |:|||:|||:@LB@ UUAUGACCUU CGU C UUACAGCACG@LB@3'-UUU...AUUCA UACACU G AAAGU...GCG-5'@LB@ | |@LB@ 65 33@LB@@LB@@LB@Energy -13.81 kcal/mol@LB@Hybridization Energy -28.8532 kcal/mol@LB@Unfolding Energy - mRNA 8.27543 kcal/mol@LB@Unfolding Energy - sRNA 6.76952 kcal/mol@LB@@LB@Position - mRNA 47 -- 78@LB@Position - sRNA 34 -- 64@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 34 -- 40@LB@ |
24 |
0.001915 |
0.2682 |
b0893 |
serS |
-16.11 |
0.017871 |
52 -- 73 |
67 -- 90 |
seryl-tRNA synthetase |
|
_____________51_______________________74\n_____________|________________________|\n5'-AAA...UGGCG________________________ACAGG...UUG-3'\n______________AAAAGCU__CGCCUGGCUGGCUGA\n______________||||||:__|:||:||||||||:|\n______________UUUUCGG__GUGGGCCGACCGAUU\n___________3'-_______UC_______________CAUUA...GCG-5'\n______________|_______________________|\n______________90______________________66\n |
67 -- 73 |
67 -- 73 |
-35.7282 kcal/mol |
7.88567 kcal/mol |
11.7355 kcal/mol |
51 74@LB@ | |@LB@5'-AAA...UGGCG ACAGG...UUG-3'@LB@ AAAAGCU CGCCUGGCUGGCUGA@LB@ ||||||: |:||:||||||||:|@LB@ UUUUCGG GUGGGCCGACCGAUU@LB@ 3'- UC CAUUA...GCG-5'@LB@ | |@LB@ 90 66@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -35.7282 kcal/mol@LB@Unfolding Energy - mRNA 7.88567 kcal/mol@LB@Unfolding Energy - sRNA 11.7355 kcal/mol@LB@@LB@Position - mRNA 52 -- 73@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 67 -- 73@LB@ |
25 |
0.002073 |
0.2692 |
b3163 |
nlpI |
-16.34 |
0.016289 |
1 -- 45 |
38 -- 89 |
lipoprotein involved in osmotic sensitivity and filamentation |
|
______________1____________________________________________________46\n______________|____________________________________________________|\n___________5'-______________U___A__AUUAAA_____________C_________C__AACCU...CAU-3'\n______________AGGGCC_GUAUCCG_CUG_GC____________GAAGCGA__UGAGCAGU_UC\n______________|::|||_|:|:|||_|||_||____________|||||:|__||||||:|_||\n______________UUUCGG_CGUGGGC_GAC_CG____________CUUCGUU__ACUCGUUA_AG\n__________3'-U______U_______C______AUUCAUUAUGAC_______AC________C__CACGA...GCG-5'\n_____________|_____________________________________________________|\n_____________90____________________________________________________37\n |
36 -- 42 |
41 -- 47 |
-40.4977 kcal/mol |
9.24688 kcal/mol |
14.9106 kcal/mol |
1 46@LB@ | |@LB@ 5'- U A AUUAAA C C AACCU...CAU-3'@LB@ AGGGCC GUAUCCG CUG GC GAAGCGA UGAGCAGU UC@LB@ |::||| |:|:||| ||| || |||||:| ||||||:| ||@LB@ UUUCGG CGUGGGC GAC CG CUUCGUU ACUCGUUA AG@LB@ 3'-U U C AUUCAUUAUGAC AC C CACGA...GCG-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -40.4977 kcal/mol@LB@Unfolding Energy - mRNA 9.24688 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 1 -- 45@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
26 |
0.002118 |
0.2692 |
b1181 |
ycgN |
-20.05 |
0.003709 |
218 -- 269 |
37 -- 88 |
UPF0153 family cysteine cluster protein |
|
_____________217_____________________________________________________270\n_____________|_______________________________________________________|\n5'-UUU...CUGAU____G_U______UU_____A______AACC__________AA____________GAAUG...GUC-3'\n______________GAGC_A_GUACCU__CUGGC_AAGUAA____CUGGA__CGA__UGAGCGAUG_CG\n______________:|||_|_|:|||:__|||||_||||||____|||||__|:|__|||||:|||_||\n______________UUCG_U_CGUGGG__GACCG_UUCAUU____GACCU__GUU__ACUCGUUAC_GC\n_________3'-UU____G________CC_____A______AU_______UC___AC_________A__ACGAA...GCG-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________36\n |
261 -- 267 |
40 -- 46 |
-50.5987 kcal/mol |
15.641 kcal/mol |
14.9108 kcal/mol |
217 270@LB@ | |@LB@5'-UUU...CUGAU G U UU A AACC AA GAAUG...GUC-3'@LB@ GAGC A GUACCU CUGGC AAGUAA CUGGA CGA UGAGCGAUG CG@LB@ :||| | |:|||: ||||| |||||| ||||| |:| |||||:||| ||@LB@ UUCG U CGUGGG GACCG UUCAUU GACCU GUU ACUCGUUAC GC@LB@ 3'-UU G CC A AU UC AC A ACGAA...GCG-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -20.05 kcal/mol@LB@Hybridization Energy -50.5987 kcal/mol@LB@Unfolding Energy - mRNA 15.641 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 218 -- 269@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 40 -- 46@LB@ |
27 |
0.002163 |
0.2692 |
b2563 |
acpS |
-16.12 |
0.017802 |
179 -- 203 |
40 -- 65 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________178_________________________204\n_____________|___________________________|\n5'-GCC...GCGUC______________C_______U____GCAAU...GCG-3'\n______________UGAUGCUGGAAGCG__GUG_GC_AAUG\n______________|:||:||||||||:__|||_||_||||\n______________AUUAUGACCUUCGU__CAC_CG_UUAC\n3'-UUU...GAUUC______________UA___U_______AGCAC...GCG-5'\n_____________|___________________________|\n_____________66__________________________39\n |
186 -- 192 |
52 -- 58 |
-28.0575 kcal/mol |
8.63593 kcal/mol |
3.30476 kcal/mol |
178 204@LB@ | |@LB@5'-GCC...GCGUC C U GCAAU...GCG-3'@LB@ UGAUGCUGGAAGCG GUG GC AAUG@LB@ |:||:||||||||: ||| || ||||@LB@ AUUAUGACCUUCGU CAC CG UUAC@LB@3'-UUU...GAUUC UA U AGCAC...GCG-5'@LB@ | |@LB@ 66 39@LB@@LB@@LB@Energy -16.12 kcal/mol@LB@Hybridization Energy -28.0575 kcal/mol@LB@Unfolding Energy - mRNA 8.63593 kcal/mol@LB@Unfolding Energy - sRNA 3.30476 kcal/mol@LB@@LB@Position - mRNA 179 -- 203@LB@Position - sRNA 40 -- 65@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 52 -- 58@LB@ |
28 |
0.002335 |
0.2776 |
b3248 |
yhdE |
-16.83 |
0.013392 |
101 -- 153 |
6 -- 68 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________100______________________________________________________________154\n_____________|________________________________________________________________|\n5'-UUA...ACCGG_____U__________________U_____GG_____CU______________A__________CUGAU...AGC-3'\n______________AAGUG_U_CUGG_AGUAGUGU_AG_CAAUG__GUGCU____GG____CCGUGG___UUUUCUUG\n______________||||:_|_||||_||:|:|||_||_|||||__|||||____||____|||:|:___|:|||:||\n______________UUCAU_A_GACC_UCGUUACA_UC_GUUAC__CACGA____CC____GGCGCU___AGAAGGAC\n3'-UUU...ACCGA_____U_U____U________C________AG_____AAGU__AAGA______CCC________UAGCG-5'\n_____________|________________________________________________________________|\n_____________69_______________________________________________________________5\n |
147 -- 153 |
6 -- 12 |
-47.0166 kcal/mol |
16.0597 kcal/mol |
14.1245 kcal/mol |
100 154@LB@ | |@LB@5'-UUA...ACCGG U U GG CU A CUGAU...AGC-3'@LB@ AAGUG U CUGG AGUAGUGU AG CAAUG GUGCU GG CCGUGG UUUUCUUG@LB@ ||||: | |||| ||:|:||| || ||||| ||||| || |||:|: |:|||:||@LB@ UUCAU A GACC UCGUUACA UC GUUAC CACGA CC GGCGCU AGAAGGAC@LB@3'-UUU...ACCGA U U U C AG AAGU AAGA CCC UAGCG-5'@LB@ | |@LB@ 69 5@LB@@LB@@LB@Energy -16.83 kcal/mol@LB@Hybridization Energy -47.0166 kcal/mol@LB@Unfolding Energy - mRNA 16.0597 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 101 -- 153@LB@Position - sRNA 6 -- 68@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 6 -- 12@LB@ |
29 |
0.002852 |
0.2776 |
b3779 |
gpp |
-14.27 |
0.036904 |
25 -- 63 |
25 -- 66 |
guanosine pentaphosphatase/exopolyphosphatase |
|
_____________24__________________________________________64\n_____________|___________________________________________|\n5'-GCC...UCCGC__C_______C___UCC___C_____C_______G________AAAUA...UGA-3'\n______________GU_GUACUGG__GC_____G_GUAAU_GUCGU_C_UUCAGGUU\n______________||_:||||||__||_____|_|:|||_|||||_|_||||||||\n______________CA_UAUGACC__CG_____C_CGUUA_CAGCA_G_AAGUCCAA\n3'-UUU...CGAUU__U_______UU__UUACA_U___________C_A________GAGGC...GCG-5'\n_____________|___________________________________________|\n_____________67__________________________________________24\n |
57 -- 63 |
25 -- 31 |
-32.1436 kcal/mol |
9.87719 kcal/mol |
7.99254 kcal/mol |
24 64@LB@ | |@LB@5'-GCC...UCCGC C C UCC C C G AAAUA...UGA-3'@LB@ GU GUACUGG GC G GUAAU GUCGU C UUCAGGUU@LB@ || :|||||| || | |:||| ||||| | ||||||||@LB@ CA UAUGACC CG C CGUUA CAGCA G AAGUCCAA@LB@3'-UUU...CGAUU U UU UUACA U C A GAGGC...GCG-5'@LB@ | |@LB@ 67 24@LB@@LB@@LB@Energy -14.27 kcal/mol@LB@Hybridization Energy -32.1436 kcal/mol@LB@Unfolding Energy - mRNA 9.87719 kcal/mol@LB@Unfolding Energy - sRNA 7.99254 kcal/mol@LB@@LB@Position - mRNA 25 -- 63@LB@Position - sRNA 25 -- 66@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 25 -- 31@LB@ |
30 |
0.002864 |
0.2776 |
b1863 |
ruvC |
-10.04 |
0.185852 |
89 -- 98 |
54 -- 63 |
component of RuvABC resolvasome endonuclease |
|
_____________88_________99\n_____________|__________|\n5'-AGC...UCGAU__________AUUGC...GCA-3'\n______________AUGCUGGAAG\n______________||:|||||||\n______________UAUGACCUUC\n3'-UUU...UUCAU__________GUUAC...GCG-5'\n_____________|__________|\n_____________64_________53\n |
92 -- 98 |
54 -- 60 |
-14.3659 kcal/mol |
1.62427 kcal/mol |
2.70635 kcal/mol |
88 99@LB@ | |@LB@5'-AGC...UCGAU AUUGC...GCA-3'@LB@ AUGCUGGAAG@LB@ ||:|||||||@LB@ UAUGACCUUC@LB@3'-UUU...UUCAU GUUAC...GCG-5'@LB@ | |@LB@ 64 53@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -14.3659 kcal/mol@LB@Unfolding Energy - mRNA 1.62427 kcal/mol@LB@Unfolding Energy - sRNA 2.70635 kcal/mol@LB@@LB@Position - mRNA 89 -- 98@LB@Position - sRNA 54 -- 63@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 54 -- 60@LB@ |
31 |
0.002952 |
0.2776 |
b3052 |
hldE |
-18.29 |
0.007494 |
235 -- 261 |
44 -- 68 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________234_________________________262\n_____________|___________________________|\n5'-GCG...UGCAG________G___UU__________U__UGGAU...CGC-3'\n______________GAGUGAUG_UGG__GGUGAUGUGA_GC\n______________:|||:||:_|||__:|::||||||_||\n______________UUCAUUAU_ACC__UCGUUACACU_CG\n3'-UUU...ACCGA________G___U______________UUACA...GCG-5'\n_____________|___________________________|\n_____________69__________________________43\n |
252 -- 258 |
46 -- 52 |
-27.5603 kcal/mol |
5.96824 kcal/mol |
3.30414 kcal/mol |
234 262@LB@ | |@LB@5'-GCG...UGCAG G UU U UGGAU...CGC-3'@LB@ GAGUGAUG UGG GGUGAUGUGA GC@LB@ :|||:||: ||| :|::|||||| ||@LB@ UUCAUUAU ACC UCGUUACACU CG@LB@3'-UUU...ACCGA G U UUACA...GCG-5'@LB@ | |@LB@ 69 43@LB@@LB@@LB@Energy -18.29 kcal/mol@LB@Hybridization Energy -27.5603 kcal/mol@LB@Unfolding Energy - mRNA 5.96824 kcal/mol@LB@Unfolding Energy - sRNA 3.30414 kcal/mol@LB@@LB@Position - mRNA 235 -- 261@LB@Position - sRNA 44 -- 68@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 46 -- 52@LB@ |
32 |
0.002983 |
0.2776 |
b3032 |
cpdA |
-14.85 |
0.029357 |
133 -- 158 |
40 -- 64 |
3' 5' cAMP phosphodiesterase |
|
_____________132_________________________159\n_____________|___________________________|\n5'-ACG...GUUGC_______UUU____C____________GCGAU...UGU-3'\n______________GAUACUG___AGCA_AUG_GAGCGAUG\n______________:||||||___||||_|||_||||:|||\n______________UUAUGAC___UCGU_UAC_CUCGUUAC\n3'-UUU...AUUCA_______CU_________A________AGCAC...GCG-5'\n_____________|___________________________|\n_____________65__________________________39\n |
152 -- 158 |
40 -- 46 |
-24.327 kcal/mol |
6.1707 kcal/mol |
3.30198 kcal/mol |
132 159@LB@ | |@LB@5'-ACG...GUUGC UUU C GCGAU...UGU-3'@LB@ GAUACUG AGCA AUG GAGCGAUG@LB@ :|||||| |||| ||| ||||:|||@LB@ UUAUGAC UCGU UAC CUCGUUAC@LB@3'-UUU...AUUCA CU A AGCAC...GCG-5'@LB@ | |@LB@ 65 39@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -24.327 kcal/mol@LB@Unfolding Energy - mRNA 6.1707 kcal/mol@LB@Unfolding Energy - sRNA 3.30198 kcal/mol@LB@@LB@Position - mRNA 133 -- 158@LB@Position - sRNA 40 -- 64@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 40 -- 46@LB@ |
33 |
0.003005 |
0.2776 |
b0698 |
kdpA |
-12.81 |
0.065301 |
205 -- 229 |
1 -- 24 |
potassium translocating ATPase subunit A |
|
_____________204_______________________230\n_____________|_________________________|\n5'-GCU...GAUGG__G___A____U___UA________CACGU...ACA-3'\n______________CU_CGC_AGGG_UCU__CUGAUCGC\n______________||_|||_||||_|||__||||||||\n______________GA_GCG_UCCC_AGA__GACUAGCG\n3'-UUU...UCCAA__G___C________AG________-5'\n_____________|________________________|\n_____________25_______________________1\n |
223 -- 229 |
1 -- 7 |
-32.8008 kcal/mol |
12.2882 kcal/mol |
7.69932 kcal/mol |
204 230@LB@ | |@LB@5'-GCU...GAUGG G A U UA CACGU...ACA-3'@LB@ CU CGC AGGG UCU CUGAUCGC@LB@ || ||| |||| ||| ||||||||@LB@ GA GCG UCCC AGA GACUAGCG@LB@3'-UUU...UCCAA G C AG -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -32.8008 kcal/mol@LB@Unfolding Energy - mRNA 12.2882 kcal/mol@LB@Unfolding Energy - sRNA 7.69932 kcal/mol@LB@@LB@Position - mRNA 205 -- 229@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 1 -- 7@LB@ |
34 |
0.003032 |
0.2776 |
b3928 |
zapB |
-12.77 |
0.066459 |
230 -- 240 |
51 -- 61 |
FtsZ stabilizer septal ring assembly factor cell division stimulator |
|
_____________229_________241\n_____________|___________|\n5'-UUU...GAGAA___________AAGUA...AAG-3'\n______________ACUGGAAGCAA\n______________|||||||||||\n______________UGACCUUCGUU\n3'-UUU...CAUUA___________ACACU...GCG-5'\n_____________|___________|\n_____________62__________50\n |
234 -- 240 |
51 -- 57 |
-17.959 kcal/mol |
2.30162 kcal/mol |
2.8896 kcal/mol |
229 241@LB@ | |@LB@5'-UUU...GAGAA AAGUA...AAG-3'@LB@ ACUGGAAGCAA@LB@ |||||||||||@LB@ UGACCUUCGUU@LB@3'-UUU...CAUUA ACACU...GCG-5'@LB@ | |@LB@ 62 50@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -17.959 kcal/mol@LB@Unfolding Energy - mRNA 2.30162 kcal/mol@LB@Unfolding Energy - sRNA 2.8896 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 51 -- 61@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 51 -- 57@LB@ |
35 |
0.003076 |
0.2776 |
b1678 |
ldtE |
-14.38 |
0.035403 |
2 -- 13 |
49 -- 60 |
murein L D-transpeptidase |
|
_____________1____________14\n_____________|____________|\n__________5'-U____________AUUCG...GCC-3'\n______________CUGGAAGCGAUG\n______________||||||||:|||\n______________GACCUUCGUUAC\n3'-UUU...AUUAU____________ACUCG...GCG-5'\n_____________|____________|\n_____________61___________48\n |
7 -- 13 |
49 -- 55 |
-19.7187 kcal/mol |
2.33169 kcal/mol |
3.00762 kcal/mol |
1 14@LB@ | |@LB@ 5'-U AUUCG...GCC-3'@LB@ CUGGAAGCGAUG@LB@ ||||||||:|||@LB@ GACCUUCGUUAC@LB@3'-UUU...AUUAU ACUCG...GCG-5'@LB@ | |@LB@ 61 48@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -19.7187 kcal/mol@LB@Unfolding Energy - mRNA 2.33169 kcal/mol@LB@Unfolding Energy - sRNA 3.00762 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 49 -- 60@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 49 -- 55@LB@ |
36 |
0.00312 |
0.2776 |
b1418 |
cybB |
-18.82 |
0.006053 |
229 -- 299 |
21 -- 85 |
cytochrome b561 |
|
_____________228__________________________________________________________________________300\n_____________|____________________________________________________________________________|\n5'-AAC...ACAAA_______UCA_________CUUUU________UUAUC____C__AUU_C______GA_________U__U______C-3'\n______________UCAGCAU___CUGGCUGGU_______UACUGG_____GCAG_GU___G_GCAAUG__GU___UUCG_GG_UUCUUC\n______________:|||||:___|:||||||:_______||||||_____|||:_||___|_||||||__||___|||:_||_||||:|\n______________GGUCGUG___GGCCGACCG_______AUGACC_____CGUU_CA___C_CGUUAC__CA___AAGU_CC_AAGAGG\n______3'-UUUUC___________________AUUCAUU______UU_______A______U______AG__CGA______________CGCUC...GCG-5'\n_____________|____________________________________________________________________________|\n_____________86___________________________________________________________________________20\n |
241 -- 247 |
70 -- 76 |
-54.3818 kcal/mol |
15.9593 kcal/mol |
19.6 kcal/mol |
228 300@LB@ | |@LB@5'-AAC...ACAAA UCA CUUUU UUAUC C AUU C GA U U C-3'@LB@ UCAGCAU CUGGCUGGU UACUGG GCAG GU G GCAAUG GU UUCG GG UUCUUC@LB@ :|||||: |:||||||: |||||| |||: || | |||||| || |||: || ||||:|@LB@ GGUCGUG GGCCGACCG AUGACC CGUU CA C CGUUAC CA AAGU CC AAGAGG@LB@ 3'-UUUUC AUUCAUU UU A U AG CGA CGCUC...GCG-5'@LB@ | |@LB@ 86 20@LB@@LB@@LB@Energy -18.82 kcal/mol@LB@Hybridization Energy -54.3818 kcal/mol@LB@Unfolding Energy - mRNA 15.9593 kcal/mol@LB@Unfolding Energy - sRNA 19.6 kcal/mol@LB@@LB@Position - mRNA 229 -- 299@LB@Position - sRNA 21 -- 85@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 70 -- 76@LB@ |
37 |
0.003144 |
0.2776 |
b3743 |
asnC |
-18.99 |
0.005660 |
240 -- 261 |
40 -- 60 |
transcriptional activator of asnA; autorepressor |
|
_____________239____________________262\n_____________|______________________|\n5'-AUU...GCAUC_________UUAA_________CGCGC...GCG-3'\n______________CUGGAAGCA____UGGGCAAUG\n______________|||||||||____||:||||||\n______________GACCUUCGU____ACUCGUUAC\n3'-UUU...AUUAU_________UAC__________AGCAC...GCG-5'\n_____________|______________________|\n_____________61_____________________39\n |
255 -- 261 |
40 -- 46 |
-27.3577 kcal/mol |
5.06736 kcal/mol |
3.29985 kcal/mol |
239 262@LB@ | |@LB@5'-AUU...GCAUC UUAA CGCGC...GCG-3'@LB@ CUGGAAGCA UGGGCAAUG@LB@ ||||||||| ||:||||||@LB@ GACCUUCGU ACUCGUUAC@LB@3'-UUU...AUUAU UAC AGCAC...GCG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -18.99 kcal/mol@LB@Hybridization Energy -27.3577 kcal/mol@LB@Unfolding Energy - mRNA 5.06736 kcal/mol@LB@Unfolding Energy - sRNA 3.29985 kcal/mol@LB@@LB@Position - mRNA 240 -- 261@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 40 -- 46@LB@ |
38 |
0.003171 |
0.2776 |
b0033 |
carB |
-16.38 |
0.016045 |
157 -- 203 |
40 -- 88 |
carbamoyl-phosphate synthase large subunit |
|
_____________156_________________________________________________204\n_____________|___________________________________________________|\n5'-GCA...UAAUU___________GUAAAACC____________A________AA_____C___CCAAA...CGU-3'\n______________GAG_CAGUACC________GCUAAGUAAU_C_GG_AGUAA___GAGC_AUG\n______________:||_|||:|||________||||||||||_|_||_||:||___||||_|||\n______________UUC_GUCGUGG________CGAUUCAUUA_G_CC_UCGUU___CUCG_UAC\n_________3'-UU___G_______GCCGAC____________U_A__U_____ACA____U___AGCAC...GCG-5'\n_____________|___________________________________________________|\n_____________89__________________________________________________39\n |
178 -- 184 |
62 -- 68 |
-37.8454 kcal/mol |
6.5567 kcal/mol |
14.9104 kcal/mol |
156 204@LB@ | |@LB@5'-GCA...UAAUU GUAAAACC A AA C CCAAA...CGU-3'@LB@ GAG CAGUACC GCUAAGUAAU C GG AGUAA GAGC AUG@LB@ :|| |||:||| |||||||||| | || ||:|| |||| |||@LB@ UUC GUCGUGG CGAUUCAUUA G CC UCGUU CUCG UAC@LB@ 3'-UU G GCCGAC U A U ACA U AGCAC...GCG-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -37.8454 kcal/mol@LB@Unfolding Energy - mRNA 6.5567 kcal/mol@LB@Unfolding Energy - sRNA 14.9104 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 62 -- 68@LB@ |
39 |
0.003417 |
0.2776 |
b4469 |
ygiQ |
-15.58 |
0.022035 |
190 -- 206 |
44 -- 60 |
Radical SAM superfamily protein |
|
_____________189_______________207\n_____________|_________________|\n5'-GCG...CAUUU__________AA_____UCUAU...CUC-3'\n______________CUGGAAGCAA__UGAGC\n______________||||||||||__|||||\n______________GACCUUCGUU__ACUCG\n3'-UUU...AUUAU__________AC_____UUACA...GCG-5'\n_____________|_________________|\n_____________61________________43\n |
193 -- 199 |
51 -- 57 |
-24.5566 kcal/mol |
5.6787 kcal/mol |
3.2985 kcal/mol |
189 207@LB@ | |@LB@5'-GCG...CAUUU AA UCUAU...CUC-3'@LB@ CUGGAAGCAA UGAGC@LB@ |||||||||| |||||@LB@ GACCUUCGUU ACUCG@LB@3'-UUU...AUUAU AC UUACA...GCG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -24.5566 kcal/mol@LB@Unfolding Energy - mRNA 5.6787 kcal/mol@LB@Unfolding Energy - sRNA 3.2985 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 51 -- 57@LB@ |
40 |
0.003423 |
0.2776 |
b3901 |
rhaM |
-14.12 |
0.039141 |
284 -- 296 |
49 -- 61 |
L-rhamnose mutarotase |
|
_____________283___________297\n_____________|_____________|\n5'-ACG...CCAGA_____________CUGA-3'\n______________ACUGGAAGCAGUG\n______________||||||||||:||\n______________UGACCUUCGUUAC\n3'-UUU...CAUUA_____________ACUCG...GCG-5'\n_____________|_____________|\n_____________62____________48\n |
290 -- 296 |
49 -- 55 |
-21.3506 kcal/mol |
4.21776 kcal/mol |
3.00866 kcal/mol |
283 297@LB@ | |@LB@5'-ACG...CCAGA CUGA-3'@LB@ ACUGGAAGCAGUG@LB@ ||||||||||:||@LB@ UGACCUUCGUUAC@LB@3'-UUU...CAUUA ACUCG...GCG-5'@LB@ | |@LB@ 62 48@LB@@LB@@LB@Energy -14.12 kcal/mol@LB@Hybridization Energy -21.3506 kcal/mol@LB@Unfolding Energy - mRNA 4.21776 kcal/mol@LB@Unfolding Energy - sRNA 3.00866 kcal/mol@LB@@LB@Position - mRNA 284 -- 296@LB@Position - sRNA 49 -- 61@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 49 -- 55@LB@ |
41 |
0.003449 |
0.2776 |
b1908 |
yecA |
-17.18 |
0.011646 |
29 -- 47 |
36 -- 56 |
UPF0149 family protein |
|
_____________28____________________48\n_____________|_____________________|\n5'-UAC...AAUCA_______A_____________GAAAC...UGG-3'\n______________AAGCAAU___AGCAGUGUCGU\n______________|||||||___||||:||||||\n______________UUCGUUA___UCGUUACAGCA\n3'-UUU...UGACC_______CAC___________CGAAA...GCG-5'\n_____________|_____________________|\n_____________57____________________35\n |
41 -- 47 |
36 -- 42 |
-23.2486 kcal/mol |
2.84047 kcal/mol |
3.225 kcal/mol |
28 48@LB@ | |@LB@5'-UAC...AAUCA A GAAAC...UGG-3'@LB@ AAGCAAU AGCAGUGUCGU@LB@ ||||||| ||||:||||||@LB@ UUCGUUA UCGUUACAGCA@LB@3'-UUU...UGACC CAC CGAAA...GCG-5'@LB@ | |@LB@ 57 35@LB@@LB@@LB@Energy -17.18 kcal/mol@LB@Hybridization Energy -23.2486 kcal/mol@LB@Unfolding Energy - mRNA 2.84047 kcal/mol@LB@Unfolding Energy - sRNA 3.225 kcal/mol@LB@@LB@Position - mRNA 29 -- 47@LB@Position - sRNA 36 -- 56@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 36 -- 42@LB@ |
42 |
0.003478 |
0.2776 |
b1882 |
cheY |
-11.00 |
0.130280 |
3 -- 21 |
36 -- 55 |
chemotaxis regulator transmitting signal to flagellar motor component |
|
_____________2____________________22\n_____________|____________________|\n_________5'-GC__G_____U___________CAGGC...UUG-3'\n______________GG_AAUGU_GGCGAUG_CGU\n______________:|_|||||_:||:|||_|||\n______________UC_UUACA_UCGUUAC_GCA\n3'-UUU...GACCU__G_____C_______A___CGAAA...GCG-5'\n_____________|____________________|\n_____________56___________________35\n |
12 -- 18 |
40 -- 46 |
-18.9303 kcal/mol |
4.70419 kcal/mol |
3.22441 kcal/mol |
2 22@LB@ | |@LB@ 5'-GC G U CAGGC...UUG-3'@LB@ GG AAUGU GGCGAUG CGU@LB@ :| ||||| :||:||| |||@LB@ UC UUACA UCGUUAC GCA@LB@3'-UUU...GACCU G C A CGAAA...GCG-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -18.9303 kcal/mol@LB@Unfolding Energy - mRNA 4.70419 kcal/mol@LB@Unfolding Energy - sRNA 3.22441 kcal/mol@LB@@LB@Position - mRNA 3 -- 21@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 12 -- 18@LB@Position Seed - sRNA 40 -- 46@LB@ |
43 |
0.003552 |
0.2776 |
b3453 |
ugpB |
-15.55 |
0.022327 |
231 -- 272 |
40 -- 85 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________230______________________________________________273\n_____________|________________________________________________|\n5'-UUC...CAGCA___________A_____GU_______G_____U___CA__________ACGAC...UGG-3'\n______________CUGGCGCUCGG_CUGGC____UAAUG__GGAA_GCA_____GGCAGUG\n______________|::||:|:|||_|||||____||||:__||||_|||_____:|||:||\n______________GGUCGUGGGCC_GACCG____AUUAU__CCUU_CGU_____UCGUUAC\n______3'-UUUUC_________________AUUC_____GA________UACAC_______AGCAC...GCG-5'\n_____________|________________________________________________|\n_____________86_______________________________________________39\n |
266 -- 272 |
40 -- 46 |
-44.9281 kcal/mol |
14.4718 kcal/mol |
14.9103 kcal/mol |
230 273@LB@ | |@LB@5'-UUC...CAGCA A GU G U CA ACGAC...UGG-3'@LB@ CUGGCGCUCGG CUGGC UAAUG GGAA GCA GGCAGUG@LB@ |::||:|:||| ||||| ||||: |||| ||| :|||:||@LB@ GGUCGUGGGCC GACCG AUUAU CCUU CGU UCGUUAC@LB@ 3'-UUUUC AUUC GA UACAC AGCAC...GCG-5'@LB@ | |@LB@ 86 39@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -44.9281 kcal/mol@LB@Unfolding Energy - mRNA 14.4718 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 231 -- 272@LB@Position - sRNA 40 -- 85@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 40 -- 46@LB@ |
44 |
0.003649 |
0.2787 |
b0147 |
ligT |
-12.24 |
0.081601 |
33 -- 98 |
26 -- 85 |
2'-5' RNA ligase |
|
_____________32____________________________________________________________________99\n_____________|_____________________________________________________________________|\n5'-CCA...AUUUC____________C___GCACUUAA_____C___C__C___CAAUCGA_______AA___AA________AAGAC...CGG-3'\n______________CCGGC_CCCGGU_GGC________UAAUA_CUG_GG_GCA_______GAGCGGU___GU___UUCAGGU\n______________||:||_|||||:_|||________|||||_|||_|:_|||_______||||::|___||___|||||||\n______________GGUCG_GGGCCG_CCG________AUUAU_GAC_CU_CGU_______CUCGUUA___CA___AAGUCCA\n______3'-UUUUC_____U______A___AUUC________________U___UACA__________CAG__CGA_______AGAGG...GCG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________25\n |
92 -- 98 |
26 -- 32 |
-49.8324 kcal/mol |
18.0057 kcal/mol |
19.5911 kcal/mol |
32 99@LB@ | |@LB@5'-CCA...AUUUC C GCACUUAA C C C CAAUCGA AA AA AAGAC...CGG-3'@LB@ CCGGC CCCGGU GGC UAAUA CUG GG GCA GAGCGGU GU UUCAGGU@LB@ ||:|| |||||: ||| ||||| ||| |: ||| ||||::| || |||||||@LB@ GGUCG GGGCCG CCG AUUAU GAC CU CGU CUCGUUA CA AAGUCCA@LB@ 3'-UUUUC U A AUUC U UACA CAG CGA AGAGG...GCG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -12.24 kcal/mol@LB@Hybridization Energy -49.8324 kcal/mol@LB@Unfolding Energy - mRNA 18.0057 kcal/mol@LB@Unfolding Energy - sRNA 19.5911 kcal/mol@LB@@LB@Position - mRNA 33 -- 98@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 26 -- 32@LB@ |
45 |
0.00394 |
0.2905 |
b4551 |
yheV |
-11.41 |
0.111890 |
172 -- 193 |
40 -- 61 |
DUF2387 family putative metal-binding protein |
|
_____________171____________________194\n_____________|______________________|\n5'-AUC...GGACG_______UG___U_______A_GGUAA...UUG-3'\n______________GCUGGGA__AAU_UGAGUAG_G\n______________:||||:|__|||_||||:|:_|\n______________UGACCUU__UUA_ACUCGUU_C\n3'-UUU...CAUUA_______CG___C_______A_AGCAC...GCG-5'\n_____________|______________________|\n_____________62_____________________39\n |
185 -- 191 |
42 -- 48 |
-20.0831 kcal/mol |
5.37544 kcal/mol |
3.30075 kcal/mol |
171 194@LB@ | |@LB@5'-AUC...GGACG UG U A GGUAA...UUG-3'@LB@ GCUGGGA AAU UGAGUAG G@LB@ :||||:| ||| ||||:|: |@LB@ UGACCUU UUA ACUCGUU C@LB@3'-UUU...CAUUA CG C A AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -20.0831 kcal/mol@LB@Unfolding Energy - mRNA 5.37544 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 42 -- 48@LB@ |
46 |
0.004112 |
0.2905 |
b3263 |
yhdU |
-13.66 |
0.046979 |
167 -- 251 |
6 -- 86 |
putative membrane protein |
|
_____________166______________________________________________________________________________________________252\n_____________|________________________________________________________________________________________________|\n5'-GAU...UUCCU______________AAACAUGCACA____C________AUUC_C_____U__GU___________C_______CUG____________________UUUGA...CAG-3'\n______________GCCAG_ACUUGGUU___________GGCU_AGGUAAUG____G_AAGUA_UG__GGC____UCGU_GUUUUCG___UCUUCGU______UUUUCUG\n______________|||||_||::||:|___________||||_|:|||||:____|_|||:|_||__:||____||||_|:||||:___|||:||:______:||:|||\n______________CGGUC_UGGGCCGA___________CCGA_UUCAUUAU____C_UUCGU_AC__UCG____AGCA_CGAAAGU___AGAGGCG______GAAGGAC\n_______3'-UUUU_____G________________________________GAC________U__AC___UUAC____________CCA_______CUCCCA_______UAGCG-5'\n_____________|________________________________________________________________________________________________|\n_____________87_______________________________________________________________________________________________5\n |
245 -- 251 |
6 -- 12 |
-59.7696 kcal/mol |
20.3812 kcal/mol |
25.7297 kcal/mol |
166 252@LB@ | |@LB@5'-GAU...UUCCU AAACAUGCACA C AUUC C U GU C CUG UUUGA...CAG-3'@LB@ GCCAG ACUUGGUU GGCU AGGUAAUG G AAGUA UG GGC UCGU GUUUUCG UCUUCGU UUUUCUG@LB@ ||||| ||::||:| |||| |:|||||: | |||:| || :|| |||| |:||||: |||:||: :||:|||@LB@ CGGUC UGGGCCGA CCGA UUCAUUAU C UUCGU AC UCG AGCA CGAAAGU AGAGGCG GAAGGAC@LB@ 3'-UUUU G GAC U AC UUAC CCA CUCCCA UAGCG-5'@LB@ | |@LB@ 87 5@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -59.7696 kcal/mol@LB@Unfolding Energy - mRNA 20.3812 kcal/mol@LB@Unfolding Energy - sRNA 25.7297 kcal/mol@LB@@LB@Position - mRNA 167 -- 251@LB@Position - sRNA 6 -- 86@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 6 -- 12@LB@ |
47 |
0.004313 |
0.2905 |
b3739 |
atpI |
-14.34 |
0.035947 |
179 -- 205 |
38 -- 58 |
ATP synthase membrane-bound accessory factor |
|
_____________178_________________________206\n_____________|___________________________|\n5'-GAA...UCGAA________GA____AAAAC________UGUGU...ACC-3'\n______________GGGAGCAG__GUGA_____GUGAUGUC\n______________||:||||:__||||_____|::|||||\n______________CCUUCGUU__CACU_____CGUUACAG\n3'-UUU...UAUGA________A__________________CACGA...GCG-5'\n_____________|___________________________|\n_____________59__________________________37\n |
199 -- 205 |
38 -- 44 |
-24.0387 kcal/mol |
6.48162 kcal/mol |
3.21639 kcal/mol |
178 206@LB@ | |@LB@5'-GAA...UCGAA GA AAAAC UGUGU...ACC-3'@LB@ GGGAGCAG GUGA GUGAUGUC@LB@ ||:||||: |||| |::|||||@LB@ CCUUCGUU CACU CGUUACAG@LB@3'-UUU...UAUGA A CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.0387 kcal/mol@LB@Unfolding Energy - mRNA 6.48162 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
48 |
0.004482 |
0.2905 |
b4045 |
yjbJ |
-14.69 |
0.031336 |
242 -- 268 |
42 -- 68 |
stress-induced protein UPF0337 family |
|
_____________241___________________________269\n_____________|_____________________________|\n5'-CGU...UUUAA________G__AAA_______________ACUGA...AAG-3'\n______________AGGUAA_A_UG___GAGCAAUG_GGGCAA\n______________|:||||_|_||___:|||||||_|:||||\n______________UUCAUU_U_AC___UUCGUUAC_CUCGUU\n3'-UUU...ACCGA______A_G__C__________A______ACAGC...GCG-5'\n_____________|_____________________________|\n_____________69____________________________41\n |
256 -- 262 |
49 -- 55 |
-22.1594 kcal/mol |
4.16538 kcal/mol |
3.30492 kcal/mol |
241 269@LB@ | |@LB@5'-CGU...UUUAA G AAA ACUGA...AAG-3'@LB@ AGGUAA A UG GAGCAAUG GGGCAA@LB@ |:|||| | || :||||||| |:||||@LB@ UUCAUU U AC UUCGUUAC CUCGUU@LB@3'-UUU...ACCGA A G C A ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -22.1594 kcal/mol@LB@Unfolding Energy - mRNA 4.16538 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 242 -- 268@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 49 -- 55@LB@ |
49 |
0.004671 |
0.2905 |
b3184 |
yhbE |
-14.90 |
0.028775 |
284 -- 299 |
49 -- 64 |
EamA family inner membrane putative transporter |
|
_____________283______________300\n_____________|________________|\n5'-AAG...AAGCA________________G-3'\n______________GGUGCUGGAGGUGAUG\n______________::|:|||||:|::|||\n______________UUAUGACCUUCGUUAC\n3'-UUU...AUUCA________________ACUCG...GCG-5'\n_____________|________________|\n_____________65_______________48\n |
293 -- 299 |
49 -- 55 |
-22.6177 kcal/mol |
4.70237 kcal/mol |
3.01036 kcal/mol |
283 300@LB@ | |@LB@5'-AAG...AAGCA G-3'@LB@ GGUGCUGGAGGUGAUG@LB@ ::|:|||||:|::|||@LB@ UUAUGACCUUCGUUAC@LB@3'-UUU...AUUCA ACUCG...GCG-5'@LB@ | |@LB@ 65 48@LB@@LB@@LB@Energy -14.90 kcal/mol@LB@Hybridization Energy -22.6177 kcal/mol@LB@Unfolding Energy - mRNA 4.70237 kcal/mol@LB@Unfolding Energy - sRNA 3.01036 kcal/mol@LB@@LB@Position - mRNA 284 -- 299@LB@Position - sRNA 49 -- 64@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 49 -- 55@LB@ |
50 |
0.004678 |
0.2905 |
b0906 |
ycaP |
-14.80 |
0.029952 |
1 -- 24 |
40 -- 67 |
UPF0702 family putative inner membrane protein |
|
______________1____________________________25\n______________|____________________________|\n___________5'-___UUU_______________________GAAUC...UCU-3'\n______________AGU___UGCUGGAAGC_____GAGCGAUG\n______________|||___|:||||||||_____||||:|||\n______________UCA___AUGACCUUCG_____CUCGUUAC\n3'-UUU...CCGAU___UU___________UUACA________AGCAC...GCG-5'\n_____________|_____________________________|\n_____________68____________________________39\n |
18 -- 24 |
40 -- 46 |
-27.5061 kcal/mol |
9.39751 kcal/mol |
3.30504 kcal/mol |
1 25@LB@ | |@LB@ 5'- UUU GAAUC...UCU-3'@LB@ AGU UGCUGGAAGC GAGCGAUG@LB@ ||| |:|||||||| ||||:|||@LB@ UCA AUGACCUUCG CUCGUUAC@LB@3'-UUU...CCGAU UU UUACA AGCAC...GCG-5'@LB@ | |@LB@ 68 39@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -27.5061 kcal/mol@LB@Unfolding Energy - mRNA 9.39751 kcal/mol@LB@Unfolding Energy - sRNA 3.30504 kcal/mol@LB@@LB@Position - mRNA 1 -- 24@LB@Position - sRNA 40 -- 67@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 40 -- 46@LB@ |
51 |
0.00476 |
0.2905 |
b3607 |
cysE |
-15.05 |
0.027128 |
184 -- 209 |
34 -- 63 |
serine acetyltransferase |
|
_____________183_____________________________210\n_____________|_______________________________|\n5'-CGG...AUCUC__CG__U________________________GAAGA...CGA-3'\n______________AU__UG_GGAGUA_____AGCAAUGUCGUGU\n______________||__||_|:||:|_____||||||||||||:\n______________UA__AC_CUUCGU_____UCGUUACAGCACG\n3'-UUU...UUCAU__UG_________UACAC_____________AAAGU...GCG-5'\n_____________|_______________________________|\n_____________64______________________________33\n |
203 -- 209 |
34 -- 40 |
-26.8035 kcal/mol |
4.97985 kcal/mol |
6.76935 kcal/mol |
183 210@LB@ | |@LB@5'-CGG...AUCUC CG U GAAGA...CGA-3'@LB@ AU UG GGAGUA AGCAAUGUCGUGU@LB@ || || |:||:| ||||||||||||:@LB@ UA AC CUUCGU UCGUUACAGCACG@LB@3'-UUU...UUCAU UG UACAC AAAGU...GCG-5'@LB@ | |@LB@ 64 33@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -26.8035 kcal/mol@LB@Unfolding Energy - mRNA 4.97985 kcal/mol@LB@Unfolding Energy - sRNA 6.76935 kcal/mol@LB@@LB@Position - mRNA 184 -- 209@LB@Position - sRNA 34 -- 63@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 34 -- 40@LB@ |
52 |
0.004779 |
0.2905 |
b4122 |
fumB |
-12.31 |
0.079331 |
182 -- 204 |
48 -- 68 |
anaerobic class I fumarate hydratase (fumarase B) |
|
_____________181_____________________205\n_____________|_______________________|\n5'-UCC...AUACA____UACAG_________U____CAAAC...ACU-3'\n______________GAGU_____GCUGGAAGC_AUGU\n______________:|||_____:||||||||_||||\n______________UUCA_____UGACCUUCG_UACA\n3'-UUU...ACCGA____UUA___________U____CUCGU...GCG-5'\n_____________|_______________________|\n_____________69______________________47\n |
193 -- 199 |
53 -- 59 |
-20.6346 kcal/mol |
5.29507 kcal/mol |
3.03052 kcal/mol |
181 205@LB@ | |@LB@5'-UCC...AUACA UACAG U CAAAC...ACU-3'@LB@ GAGU GCUGGAAGC AUGU@LB@ :||| :|||||||| ||||@LB@ UUCA UGACCUUCG UACA@LB@3'-UUU...ACCGA UUA U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -20.6346 kcal/mol@LB@Unfolding Energy - mRNA 5.29507 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 182 -- 204@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 53 -- 59@LB@ |
53 |
0.004949 |
0.2905 |
b3353 |
yheT |
-17.66 |
0.009631 |
104 -- 164 |
43 -- 88 |
UPF0017 family putative hydrolase |
|
_____________103____________________________________________________________165\n_____________|______________________________________________________________|\n5'-GAG...ACAGC__________CAAAU____C____AA_____CGAAAUGGCAUG_________CCAG______GCUUG...UGC-3'\n______________AAGCCAGCGC_____CCGG_CUGG__GAGUG____________GCUGGAAGC_____GAGCA\n______________||||||||:|_____||||_||||__:|||:____________:||||||||_____|||||\n______________UUCGGUCGUG_____GGCC_GACC__UUCAU____________UGACCUUCG_____CUCGU\n_________3'-UU________________________GA_____UA___________________UUACA_____UACAG...GCG-5'\n_____________|______________________________________________________________|\n_____________89_____________________________________________________________42\n |
149 -- 155 |
53 -- 59 |
-55.8349 kcal/mol |
23.2651 kcal/mol |
14.9102 kcal/mol |
103 165@LB@ | |@LB@5'-GAG...ACAGC CAAAU C AA CGAAAUGGCAUG CCAG GCUUG...UGC-3'@LB@ AAGCCAGCGC CCGG CUGG GAGUG GCUGGAAGC GAGCA@LB@ ||||||||:| |||| |||| :|||: :|||||||| |||||@LB@ UUCGGUCGUG GGCC GACC UUCAU UGACCUUCG CUCGU@LB@ 3'-UU GA UA UUACA UACAG...GCG-5'@LB@ | |@LB@ 89 42@LB@@LB@@LB@Energy -17.66 kcal/mol@LB@Hybridization Energy -55.8349 kcal/mol@LB@Unfolding Energy - mRNA 23.2651 kcal/mol@LB@Unfolding Energy - sRNA 14.9102 kcal/mol@LB@@LB@Position - mRNA 104 -- 164@LB@Position - sRNA 43 -- 88@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 53 -- 59@LB@ |
54 |
0.00511 |
0.2905 |
b0487 |
cueR |
-8.71 |
0.294876 |
81 -- 102 |
6 -- 25 |
copper-responsive regulon transcriptional regulator |
|
_____________80_____________________103\n_____________|______________________|\n5'-GUU...ACAUC________C_CA__A_______UAUUA...AAA-3'\n______________UCUCUGUG_G__GU_CUUCCUG\n______________||||:|:|_|__||_|||||||\n______________AGAGGCGC_C__CA_GAAGGAC\n3'-UUU...GUCCA________U_C___________UAGCG-5'\n_____________|______________________|\n_____________26_____________________5\n |
96 -- 102 |
6 -- 12 |
-22.4921 kcal/mol |
6.07455 kcal/mol |
7.70509 kcal/mol |
80 103@LB@ | |@LB@5'-GUU...ACAUC C CA A UAUUA...AAA-3'@LB@ UCUCUGUG G GU CUUCCUG@LB@ ||||:|:| | || |||||||@LB@ AGAGGCGC C CA GAAGGAC@LB@3'-UUU...GUCCA U C UAGCG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -22.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.07455 kcal/mol@LB@Unfolding Energy - sRNA 7.70509 kcal/mol@LB@@LB@Position - mRNA 81 -- 102@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 6 -- 12@LB@ |
55 |
0.005153 |
0.2905 |
b2727 |
hypB |
-14.04 |
0.040392 |
194 -- 204 |
39 -- 49 |
GTP hydrolase involved in nickel liganding into hydrogenases |
|
_____________193_________205\n_____________|___________|\n5'-GCC...CAGGA___________GUACA...CGG-3'\n______________GUGAGCGAUGU\n______________||||||:||||\n______________CACUCGUUACA\n3'-UUU...CGUUA___________GCACG...GCG-5'\n_____________|___________|\n_____________50__________38\n |
198 -- 204 |
39 -- 45 |
-18.0568 kcal/mol |
2.85856 kcal/mol |
1.15413 kcal/mol |
193 205@LB@ | |@LB@5'-GCC...CAGGA GUACA...CGG-3'@LB@ GUGAGCGAUGU@LB@ ||||||:||||@LB@ CACUCGUUACA@LB@3'-UUU...CGUUA GCACG...GCG-5'@LB@ | |@LB@ 50 38@LB@@LB@@LB@Energy -14.04 kcal/mol@LB@Hybridization Energy -18.0568 kcal/mol@LB@Unfolding Energy - mRNA 2.85856 kcal/mol@LB@Unfolding Energy - sRNA 1.15413 kcal/mol@LB@@LB@Position - mRNA 194 -- 204@LB@Position - sRNA 39 -- 49@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 39 -- 45@LB@ |
56 |
0.005166 |
0.2905 |
b0152 |
fhuD |
-11.53 |
0.106927 |
159 -- 195 |
38 -- 86 |
iron(3+)-hydroxamate import ABC transporter periplasmic binding protein |
|
_____________158________________________________________________196\n_____________|__________________________________________________|\n5'-ACG...AUUUU_____________G___GCU_______________CC_______UU____UAUUG...UUG-3'\n______________GCC_GCAUCCGGC_GGU_______________GCA__UGUGAGU__UGUU\n______________|||_|||:|||||_||:_______________|||__||||||:__|||:\n______________CGG_CGUGGGCCG_CCG_______________CGU__ACACUCG__ACAG\n_______3'-UUUU___U_________A___AUUCAUUAUGACCUU___U________UU____CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________87_________________________________________________37\n |
183 -- 189 |
44 -- 50 |
-42.47 kcal/mol |
16.0325 kcal/mol |
14.9106 kcal/mol |
158 196@LB@ | |@LB@5'-ACG...AUUUU G GCU CC UU UAUUG...UUG-3'@LB@ GCC GCAUCCGGC GGU GCA UGUGAGU UGUU@LB@ ||| |||:||||| ||: ||| ||||||: |||:@LB@ CGG CGUGGGCCG CCG CGU ACACUCG ACAG@LB@ 3'-UUUU U A AUUCAUUAUGACCUU U UU CACGA...GCG-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -42.47 kcal/mol@LB@Unfolding Energy - mRNA 16.0325 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 159 -- 195@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 44 -- 50@LB@ |
57 |
0.005292 |
0.2905 |
b0077 |
ilvI |
-12.73 |
0.067491 |
188 -- 240 |
1 -- 67 |
acetolactate synthase 3 large subunit |
|
_____________187__________________________________________________________________241\n_____________|____________________________________________________________________|\n5'-AAA...CAAAC___________C____C_________________________AG_____A__U____G__________UUAUC...UUU-3'\n______________AGUGA____GG_AGGC_AUG_GAG__AUGUUGU_CU____GG____CCG_GA_GGUC_UCC_GAUCGC\n______________|||:|____||_|:||_|||_|||__||||:||_||____||____|||_||_||||_|||_||||||\n______________UCAUU____CC_UUCG_UAC_CUC__UACAGCA_GA____CC____GGC_CU_CCAG_AGG_CUAGCG\n3'-UUU...CCGAU_____AUGA_______U___A___GU_______C__AAGU__AAGA___G__C____A___A______-5'\n_____________|___________________________________________________________________|\n_____________68__________________________________________________________________1\n |
207 -- 213 |
36 -- 42 |
-47.8903 kcal/mol |
21.0378 kcal/mol |
14.1245 kcal/mol |
187 241@LB@ | |@LB@5'-AAA...CAAAC C C AG A U G UUAUC...UUU-3'@LB@ AGUGA GG AGGC AUG GAG AUGUUGU CU GG CCG GA GGUC UCC GAUCGC@LB@ |||:| || |:|| ||| ||| ||||:|| || || ||| || |||| ||| ||||||@LB@ UCAUU CC UUCG UAC CUC UACAGCA GA CC GGC CU CCAG AGG CUAGCG@LB@3'-UUU...CCGAU AUGA U A GU C AAGU AAGA G C A A -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -47.8903 kcal/mol@LB@Unfolding Energy - mRNA 21.0378 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 36 -- 42@LB@ |
58 |
0.00551 |
0.2905 |
b0156 |
erpA |
-13.52 |
0.049632 |
189 -- 214 |
36 -- 60 |
iron-sulfur cluster insertion protein |
|
_____________188_________________________215\n_____________|___________________________|\n5'-UAG...GUCGU__________AAUA_________A___AGCAC...UAC-3'\n______________UUGG_AGCAA____UGAGUGAUG_CGU\n______________:|||_|||||____||||::|||_|||\n______________GACC_UCGUU____ACUCGUUAC_GCA\n3'-UUU...AUUAU____U_____AC___________A___CGAAA...GCG-5'\n_____________|___________________________|\n_____________61__________________________35\n |
204 -- 210 |
40 -- 46 |
-21.0837 kcal/mol |
4.26473 kcal/mol |
3.30077 kcal/mol |
188 215@LB@ | |@LB@5'-UAG...GUCGU AAUA A AGCAC...UAC-3'@LB@ UUGG AGCAA UGAGUGAUG CGU@LB@ :||| ||||| ||||::||| |||@LB@ GACC UCGUU ACUCGUUAC GCA@LB@3'-UUU...AUUAU U AC A CGAAA...GCG-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -21.0837 kcal/mol@LB@Unfolding Energy - mRNA 4.26473 kcal/mol@LB@Unfolding Energy - sRNA 3.30077 kcal/mol@LB@@LB@Position - mRNA 189 -- 214@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 40 -- 46@LB@ |
59 |
0.005518 |
0.2905 |
b3663 |
yicN |
-20.80 |
0.002740 |
224 -- 256 |
26 -- 61 |
DUF1198 family protein |
|
_____________223__________________________________257\n_____________|____________________________________|\n5'-CUU...GCCAC_____C________UU__G_________________GCUGA...AUC-3'\n______________GCUGG_GGUAGUGU__GU___GUUG_GUUUUCGGGU\n______________:||||_:|:|:|||__|:___||:|_|:||||:|||\n______________UGACC_UCGUUACA__CG___CAGC_CGAAAGUCCA\n3'-UUU...CAUUA_____U________CU__UUA____A__________AGAGG...GCG-5'\n_____________|____________________________________|\n_____________62___________________________________25\n |
250 -- 256 |
26 -- 32 |
-36.0496 kcal/mol |
7.2648 kcal/mol |
7.98122 kcal/mol |
223 257@LB@ | |@LB@5'-CUU...GCCAC C UU G GCUGA...AUC-3'@LB@ GCUGG GGUAGUGU GU GUUG GUUUUCGGGU@LB@ :|||| :|:|:||| |: ||:| |:||||:|||@LB@ UGACC UCGUUACA CG CAGC CGAAAGUCCA@LB@3'-UUU...CAUUA U CU UUA A AGAGG...GCG-5'@LB@ | |@LB@ 62 25@LB@@LB@@LB@Energy -20.80 kcal/mol@LB@Hybridization Energy -36.0496 kcal/mol@LB@Unfolding Energy - mRNA 7.2648 kcal/mol@LB@Unfolding Energy - sRNA 7.98122 kcal/mol@LB@@LB@Position - mRNA 224 -- 256@LB@Position - sRNA 26 -- 61@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 26 -- 32@LB@ |
60 |
0.005592 |
0.2905 |
b3577 |
yiaM |
-14.71 |
0.031138 |
209 -- 232 |
41 -- 64 |
2 3-diketo-L-gulonate TRAP transporter small permease protein |
|
_____________208______________________233\n_____________|________________________|\n5'-UUC...AAAAA______C________ACU______UAAUC...GCA-3'\n______________AAUACU_GAAGCAAU___GGCGAU\n______________||||||_||||||||___:||:||\n______________UUAUGA_CUUCGUUA___UCGUUA\n3'-UUU...AUUCA______C________CAC______CAGCA...GCG-5'\n_____________|________________________|\n_____________65_______________________40\n |
217 -- 223 |
50 -- 56 |
-21.6131 kcal/mol |
3.60615 kcal/mol |
3.30185 kcal/mol |
208 233@LB@ | |@LB@5'-UUC...AAAAA C ACU UAAUC...GCA-3'@LB@ AAUACU GAAGCAAU GGCGAU@LB@ |||||| |||||||| :||:||@LB@ UUAUGA CUUCGUUA UCGUUA@LB@3'-UUU...AUUCA C CAC CAGCA...GCG-5'@LB@ | |@LB@ 65 40@LB@@LB@@LB@Energy -14.71 kcal/mol@LB@Hybridization Energy -21.6131 kcal/mol@LB@Unfolding Energy - mRNA 3.60615 kcal/mol@LB@Unfolding Energy - sRNA 3.30185 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 41 -- 64@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 50 -- 56@LB@ |
61 |
0.005602 |
0.2905 |
b1778 |
msrB |
-11.92 |
0.091967 |
166 -- 177 |
43 -- 54 |
methionine sulfoxide reductase B |
|
_____________165__________178\n_____________|____________|\n5'-CUU...GUCAC____________CGAUU...GUC-3'\n______________GUAAUGUGAGCA\n______________|:||||||||||\n______________CGUUACACUCGU\n3'-UUU...ACCUU____________UACAG...GCG-5'\n_____________|____________|\n_____________55___________42\n |
171 -- 177 |
43 -- 49 |
-18.0171 kcal/mol |
2.89402 kcal/mol |
3.19978 kcal/mol |
165 178@LB@ | |@LB@5'-CUU...GUCAC CGAUU...GUC-3'@LB@ GUAAUGUGAGCA@LB@ |:||||||||||@LB@ CGUUACACUCGU@LB@3'-UUU...ACCUU UACAG...GCG-5'@LB@ | |@LB@ 55 42@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -18.0171 kcal/mol@LB@Unfolding Energy - mRNA 2.89402 kcal/mol@LB@Unfolding Energy - sRNA 3.19978 kcal/mol@LB@@LB@Position - mRNA 166 -- 177@LB@Position - sRNA 43 -- 54@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 43 -- 49@LB@ |
62 |
0.005609 |
0.2905 |
b1132 |
hflD |
-11.66 |
0.101792 |
188 -- 207 |
42 -- 58 |
putative lysogenization regulator |
|
_____________187___________________208\n_____________|_____________________|\n5'-ACC...AACAA_________GAAC________AGAAU...CCG-3'\n______________GGAAGCAGU____GUG_GCAA\n______________|||||||:|____|||_||||\n______________CCUUCGUUA____CAC_CGUU\n3'-UUU...UAUGA________________U____ACAGC...GCG-5'\n_____________|_____________________|\n_____________59____________________41\n |
190 -- 196 |
50 -- 56 |
-19.7521 kcal/mol |
4.88534 kcal/mol |
3.2101 kcal/mol |
187 208@LB@ | |@LB@5'-ACC...AACAA GAAC AGAAU...CCG-3'@LB@ GGAAGCAGU GUG GCAA@LB@ |||||||:| ||| ||||@LB@ CCUUCGUUA CAC CGUU@LB@3'-UUU...UAUGA U ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -19.7521 kcal/mol@LB@Unfolding Energy - mRNA 4.88534 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 188 -- 207@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
63 |
0.005616 |
0.2905 |
b3261 |
fis |
-12.93 |
0.062484 |
136 -- 161 |
37 -- 61 |
global DNA-binding transcriptional dual regulator |
|
_____________135________________________162\n_____________|__________________________|\n5'-GGA...GAACA__________U__GA____UACU___AAAAU...AGG-3'\n______________GCUGGAGGCG_UG__GGCA____UCG\n______________:|||||:||:_||__:|||____|||\n______________UGACCUUCGU_AC__UCGU____AGC\n3'-UUU...CAUUA__________U__AC____UAC____ACGAA...GCG-5'\n_____________|__________________________|\n_____________62_________________________36\n |
139 -- 145 |
52 -- 58 |
-26.9705 kcal/mol |
10.742 kcal/mol |
3.30158 kcal/mol |
135 162@LB@ | |@LB@5'-GGA...GAACA U GA UACU AAAAU...AGG-3'@LB@ GCUGGAGGCG UG GGCA UCG@LB@ :|||||:||: || :||| |||@LB@ UGACCUUCGU AC UCGU AGC@LB@3'-UUU...CAUUA U AC UAC ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -26.9705 kcal/mol@LB@Unfolding Energy - mRNA 10.742 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 136 -- 161@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
64 |
0.005632 |
0.2905 |
b3005 |
exbD |
-12.96 |
0.061586 |
76 -- 96 |
37 -- 56 |
membrane spanning protein in TonB-ExbB-ExbD complex |
|
_____________75____________________97\n_____________|_____________________|\n5'-CGG...CUUUA________C____________CAGCG...UCU-3'\n______________AAGCGAUG_UGGGUGAUGUUG\n______________||||:|||_||:|::||||:|\n______________UUCGUUAC_ACUCGUUACAGC\n3'-UUU...UGACC_____________________ACGAA...GCG-5'\n_____________|_____________________|\n_____________57____________________36\n |
90 -- 96 |
37 -- 43 |
-25.0811 kcal/mol |
8.89195 kcal/mol |
3.22494 kcal/mol |
75 97@LB@ | |@LB@5'-CGG...CUUUA C CAGCG...UCU-3'@LB@ AAGCGAUG UGGGUGAUGUUG@LB@ ||||:||| ||:|::||||:|@LB@ UUCGUUAC ACUCGUUACAGC@LB@3'-UUU...UGACC ACGAA...GCG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -25.0811 kcal/mol@LB@Unfolding Energy - mRNA 8.89195 kcal/mol@LB@Unfolding Energy - sRNA 3.22494 kcal/mol@LB@@LB@Position - mRNA 76 -- 96@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 37 -- 43@LB@ |
65 |
0.005781 |
0.2905 |
b0934 |
ssuC |
-15.17 |
0.025944 |
17 -- 44 |
19 -- 47 |
aliphatic sulfonate ABC transporter permease |
|
_____________16____________________________45\n_____________|_____________________________|\n5'-UGC...GCAUC_______U_____________CUA_____AUCUG...GGC-3'\n______________GA_CAGU_UUGUGCUUUCGGG___UCCGC\n______________||_||:|_|:||||||||:||___|||||\n______________CU_GUUA_AGCACGAAAGUCC___AGGCG\n3'-UUU...UUACA__C____C_____________AAG_____CUCCC...GCG-5'\n_____________|_____________________________|\n_____________48____________________________18\n |
26 -- 32 |
31 -- 37 |
-34.9159 kcal/mol |
9.62465 kcal/mol |
10.1243 kcal/mol |
16 45@LB@ | |@LB@5'-UGC...GCAUC U CUA AUCUG...GGC-3'@LB@ GA CAGU UUGUGCUUUCGGG UCCGC@LB@ || ||:| |:||||||||:|| |||||@LB@ CU GUUA AGCACGAAAGUCC AGGCG@LB@3'-UUU...UUACA C C AAG CUCCC...GCG-5'@LB@ | |@LB@ 48 18@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -34.9159 kcal/mol@LB@Unfolding Energy - mRNA 9.62465 kcal/mol@LB@Unfolding Energy - sRNA 10.1243 kcal/mol@LB@@LB@Position - mRNA 17 -- 44@LB@Position - sRNA 19 -- 47@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 31 -- 37@LB@ |
66 |
0.005808 |
0.2905 |
b2016 |
yeeZ |
-14.47 |
0.034156 |
261 -- 292 |
51 -- 85 |
putative epimerase |
|
_____________260_________________________________293\n_____________|___________________________________|\n5'-ACC...CACUU_______GA____________C____C________AACCACAC-3'\n______________UCAGCGC__GGCUGGC_AAGU___AC_GGGAGUAA\n______________:||||:|__|||||||_||||___||_||:||:||\n______________GGUCGUG__CCGACCG_UUCA___UG_CCUUCGUU\n______3'-UUUUC_______GG_______A____UUA__A________ACACU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________50\n |
286 -- 292 |
51 -- 57 |
-40.5662 kcal/mol |
11.5945 kcal/mol |
14.5012 kcal/mol |
260 293@LB@ | |@LB@5'-ACC...CACUU GA C C AACCACAC-3'@LB@ UCAGCGC GGCUGGC AAGU AC GGGAGUAA@LB@ :||||:| ||||||| |||| || ||:||:||@LB@ GGUCGUG CCGACCG UUCA UG CCUUCGUU@LB@ 3'-UUUUC GG A UUA A ACACU...GCG-5'@LB@ | |@LB@ 86 50@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -40.5662 kcal/mol@LB@Unfolding Energy - mRNA 11.5945 kcal/mol@LB@Unfolding Energy - sRNA 14.5012 kcal/mol@LB@@LB@Position - mRNA 261 -- 292@LB@Position - sRNA 51 -- 85@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 51 -- 57@LB@ |
67 |
0.005865 |
0.2905 |
b4138 |
dcuA |
-11.52 |
0.107256 |
35 -- 44 |
73 -- 82 |
C4-dicarboxylate antiporter |
|
_____________34_________45\n_____________|__________|\n5'-AAC...CUGAU__________UACAA...UGG-3'\n______________GCACCCGGCU\n______________||||||||||\n______________CGUGGGCCGA\n___3'-UUUUCGGU__________CCGAU...GCG-5'\n_____________|__________|\n_____________83_________72\n |
38 -- 44 |
73 -- 79 |
-22.0144 kcal/mol |
2.69052 kcal/mol |
7.80512 kcal/mol |
34 45@LB@ | |@LB@5'-AAC...CUGAU UACAA...UGG-3'@LB@ GCACCCGGCU@LB@ ||||||||||@LB@ CGUGGGCCGA@LB@ 3'-UUUUCGGU CCGAU...GCG-5'@LB@ | |@LB@ 83 72@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -22.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.69052 kcal/mol@LB@Unfolding Energy - sRNA 7.80512 kcal/mol@LB@@LB@Position - mRNA 35 -- 44@LB@Position - sRNA 73 -- 82@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 73 -- 79@LB@ |
68 |
0.00588 |
0.2905 |
b4222 |
ytfP |
-12.04 |
0.087961 |
130 -- 151 |
48 -- 68 |
GGCT-like protein |
|
_____________129____________________152\n_____________|______________________|\n5'-ACC...UGCCU___CU___U________C____CUGGU...ACC-3'\n______________AAG__AUA_CUGGAAGC_GUGU\n______________|||__|||_||||||||_:|||\n______________UUC__UAU_GACCUUCG_UACA\n3'-UUU...ACCGA___AU____________U____CUCGU...GCG-5'\n_____________|______________________|\n_____________69_____________________47\n |
140 -- 146 |
53 -- 59 |
-18.8807 kcal/mol |
3.81035 kcal/mol |
3.03052 kcal/mol |
129 152@LB@ | |@LB@5'-ACC...UGCCU CU U C CUGGU...ACC-3'@LB@ AAG AUA CUGGAAGC GUGU@LB@ ||| ||| |||||||| :|||@LB@ UUC UAU GACCUUCG UACA@LB@3'-UUU...ACCGA AU U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -18.8807 kcal/mol@LB@Unfolding Energy - mRNA 3.81035 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 130 -- 151@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 53 -- 59@LB@ |
69 |
0.006014 |
0.2917 |
b3416 |
malQ |
-15.44 |
0.023264 |
163 -- 216 |
38 -- 88 |
4-alpha-glucanotransferase (amylomaltase) |
|
_____________162_____________________________________________________217\n_____________|_______________________________________________________|\n5'-GCG...UUAUC_____C_________A___AAAACGCUAA_______UC____GAA_____AC___UGGAU...CCA-3'\n______________AGGCU_GUAUCUGGC_GGC___________GGAAGC__GAUG___AGCAA__GUC\n______________|:||:_|:|:|:|||_|||___________||||||__:|||___|||||__|||\n______________UUCGG_CGUGGGCCG_CCG___________CCUUCG__UUAC___UCGUU__CAG\n_________3'-UU_____U_________A___AUUCAUUAUGA____________AC______A____CACGA...GCG-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________37\n |
171 -- 177 |
74 -- 80 |
-43.8565 kcal/mol |
13.5036 kcal/mol |
14.9106 kcal/mol |
162 217@LB@ | |@LB@5'-GCG...UUAUC C A AAAACGCUAA UC GAA AC UGGAU...CCA-3'@LB@ AGGCU GUAUCUGGC GGC GGAAGC GAUG AGCAA GUC@LB@ |:||: |:|:|:||| ||| |||||| :||| ||||| |||@LB@ UUCGG CGUGGGCCG CCG CCUUCG UUAC UCGUU CAG@LB@ 3'-UU U A AUUCAUUAUGA AC A CACGA...GCG-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -43.8565 kcal/mol@LB@Unfolding Energy - mRNA 13.5036 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 163 -- 216@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 74 -- 80@LB@ |
70 |
0.006078 |
0.2917 |
b1612 |
fumA |
-11.08 |
0.126554 |
60 -- 88 |
36 -- 58 |
fumarate hydratase (fumarase A) aerobic Class I |
|
_____________59_____________________________89\n_____________|______________________________|\n5'-AUG...CUACG________CC_______CGCAA__A_____ACUAG...AAU-3'\n______________GGAAGUAA__UG_GAGC_____AA_GUCGU\n______________|||||:||__||_||||_____||_|||||\n______________CCUUCGUU__AC_CUCG_____UU_CAGCA\n3'-UUU...UAUGA____________A___________A_____CGAAA...GCG-5'\n_____________|______________________________|\n_____________59_____________________________35\n |
61 -- 67 |
51 -- 57 |
-19.4215 kcal/mol |
5.11518 kcal/mol |
3.22706 kcal/mol |
59 89@LB@ | |@LB@5'-AUG...CUACG CC CGCAA A ACUAG...AAU-3'@LB@ GGAAGUAA UG GAGC AA GUCGU@LB@ |||||:|| || |||| || |||||@LB@ CCUUCGUU AC CUCG UU CAGCA@LB@3'-UUU...UAUGA A A CGAAA...GCG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.4215 kcal/mol@LB@Unfolding Energy - mRNA 5.11518 kcal/mol@LB@Unfolding Energy - sRNA 3.22706 kcal/mol@LB@@LB@Position - mRNA 60 -- 88@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 51 -- 57@LB@ |
71 |
0.00621 |
0.2939 |
b0178 |
skp |
-11.69 |
0.100677 |
99 -- 118 |
40 -- 66 |
periplasmic chaperone |
|
_____________98__________________________119\n_____________|___________________________|\n5'-CUC...GGAAU___________________________ACUUU...UCC-3'\n______________GUAGU______GGUAGUGU_AGCGAUG\n______________|||:|______:|:|:|||_|||:|||\n______________CAUUA______UCGUUACA_UCGUUAC\n3'-UUU...CGAUU_____UGACCU________C_______AGCAC...GCG-5'\n_____________|___________________________|\n_____________67__________________________39\n |
112 -- 118 |
40 -- 46 |
-18.9809 kcal/mol |
3.99027 kcal/mol |
3.30497 kcal/mol |
98 119@LB@ | |@LB@5'-CUC...GGAAU ACUUU...UCC-3'@LB@ GUAGU GGUAGUGU AGCGAUG@LB@ |||:| :|:|:||| |||:|||@LB@ CAUUA UCGUUACA UCGUUAC@LB@3'-UUU...CGAUU UGACCU C AGCAC...GCG-5'@LB@ | |@LB@ 67 39@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -18.9809 kcal/mol@LB@Unfolding Energy - mRNA 3.99027 kcal/mol@LB@Unfolding Energy - sRNA 3.30497 kcal/mol@LB@@LB@Position - mRNA 99 -- 118@LB@Position - sRNA 40 -- 66@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 40 -- 46@LB@ |
72 |
0.00645 |
0.301 |
b2125 |
yehT |
-9.24 |
0.246554 |
1 -- 8 |
14 -- 21 |
putative response regulator in two-component system withYehU |
|
______________1_______9\n______________|_______|\n___________5'-________GCAAC...GUU-3'\n______________CGUGAGGG\n______________||:|||||\n______________GCGCUCCC\n3'-UUU...AAGAG________AGAAG...GCG-5'\n_____________|________|\n_____________22_______13\n |
2 -- 8 |
14 -- 20 |
-15.432 kcal/mol |
1.85513 kcal/mol |
4.33947 kcal/mol |
1 9@LB@ | |@LB@ 5'- GCAAC...GUU-3'@LB@ CGUGAGGG@LB@ ||:|||||@LB@ GCGCUCCC@LB@3'-UUU...AAGAG AGAAG...GCG-5'@LB@ | |@LB@ 22 13@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -15.432 kcal/mol@LB@Unfolding Energy - mRNA 1.85513 kcal/mol@LB@Unfolding Energy - sRNA 4.33947 kcal/mol@LB@@LB@Position - mRNA 1 -- 8@LB@Position - sRNA 14 -- 21@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 14 -- 20@LB@ |
73 |
0.006758 |
0.3082 |
b0073 |
leuB |
-14.41 |
0.035044 |
252 -- 295 |
42 -- 89 |
3-isopropylmalate dehydrogenase NAD(+)-dependent |
|
_____________251_______________________________________________296\n_____________|_________________________________________________|\n5'-AAA...GUCCG_____G_UG____A__________A__________U__C_____C____CCGCU-3'\n______________GAAGU_A__ACCC_GGC__GCUGA__AGUGCUGGA_GC___GUG_GCAA\n______________:|||:_|__||||_|||__|||:|__|:|:|||||_||___|||_||||\n______________UUUCG_U__UGGG_CCG__CGAUU__UUAUGACCU_CG___CAC_CGUU\n__________3'-U_____G_CG________AC_____CA_________U__UUA___U____ACAGC...GCG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________41\n |
277 -- 283 |
56 -- 62 |
-44.364 kcal/mol |
15.0484 kcal/mol |
14.9103 kcal/mol |
251 296@LB@ | |@LB@5'-AAA...GUCCG G UG A A U C C CCGCU-3'@LB@ GAAGU A ACCC GGC GCUGA AGUGCUGGA GC GUG GCAA@LB@ :|||: | |||| ||| |||:| |:|:||||| || ||| ||||@LB@ UUUCG U UGGG CCG CGAUU UUAUGACCU CG CAC CGUU@LB@ 3'-U G CG AC CA U UUA U ACAGC...GCG-5'@LB@ | |@LB@ 90 41@LB@@LB@@LB@Energy -14.41 kcal/mol@LB@Hybridization Energy -44.364 kcal/mol@LB@Unfolding Energy - mRNA 15.0484 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 252 -- 295@LB@Position - sRNA 42 -- 89@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 56 -- 62@LB@ |
74 |
0.006788 |
0.3082 |
b3525 |
yhjH |
-16.42 |
0.015793 |
272 -- 288 |
44 -- 60 |
cyclic-di-GMP phosphodiesterase FlhDC-regulated |
|
_____________271_______________289\n_____________|_________________|\n5'-UUA...CGUUU____UU___________GUGCU...CCU-3'\n______________UUGG__GCAGUGUGAGC\n______________:|||__|||:|||||||\n______________GACC__CGUUACACUCG\n3'-UUU...AUUAU____UU___________UUACA...GCG-5'\n_____________|_________________|\n_____________61________________43\n |
279 -- 285 |
47 -- 53 |
-25.6078 kcal/mol |
5.89114 kcal/mol |
3.2985 kcal/mol |
271 289@LB@ | |@LB@5'-UUA...CGUUU UU GUGCU...CCU-3'@LB@ UUGG GCAGUGUGAGC@LB@ :||| |||:|||||||@LB@ GACC CGUUACACUCG@LB@3'-UUU...AUUAU UU UUACA...GCG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -25.6078 kcal/mol@LB@Unfolding Energy - mRNA 5.89114 kcal/mol@LB@Unfolding Energy - sRNA 3.2985 kcal/mol@LB@@LB@Position - mRNA 272 -- 288@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 47 -- 53@LB@ |
75 |
0.007199 |
0.3134 |
b2167 |
fruA |
-15.16 |
0.026023 |
90 -- 122 |
43 -- 84 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________89_________________________________________123\n_____________|__________________________________________|\n5'-CGC...UGUUG____________________CA____________________UUACC...AAA-3'\n______________CAGC_CCUGGC_GG_UAAGU________AAGCAAUGUGGGUA\n______________||||_||:|||_||_|||||________||||||||||:|:|\n______________GUCG_GGGCCG_CC_AUUCA________UUCGUUACACUCGU\n_____3'-UUUUCG____U______A__G_____UUAUGACC______________UACAG...GCG-5'\n_____________|__________________________________________|\n_____________85_________________________________________42\n |
116 -- 122 |
43 -- 49 |
-41.7817 kcal/mol |
11.7261 kcal/mol |
14.8963 kcal/mol |
89 123@LB@ | |@LB@5'-CGC...UGUUG CA UUACC...AAA-3'@LB@ CAGC CCUGGC GG UAAGU AAGCAAUGUGGGUA@LB@ |||| ||:||| || ||||| ||||||||||:|:|@LB@ GUCG GGGCCG CC AUUCA UUCGUUACACUCGU@LB@ 3'-UUUUCG U A G UUAUGACC UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -41.7817 kcal/mol@LB@Unfolding Energy - mRNA 11.7261 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 90 -- 122@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 43 -- 49@LB@ |
76 |
0.007246 |
0.3134 |
b4174 |
hflK |
-10.43 |
0.160892 |
249 -- 292 |
51 -- 90 |
modulator for HflB protease specific for phage lambda cII repressor |
|
_____________248_____________________________________________293\n_____________|_______________________________________________|\n5'-AGA...CGUGG__________AA___________AACUC____GGAAA______A___AGGCGGUC-3'\n______________GGAAG_CAGC__ACCUGGC_GGC_____UGAG______UGGAA_CAA\n______________::|||_||||__|||:|||_|||_____|:||______|||||_|||\n______________UUUUC_GUCG__UGGGCCG_CCG_____AUUC______ACCUU_GUU\n___________3'-_____G_____________A____________AUUAUG_____C___ACACU...GCG-5'\n______________|______________________________________________|\n______________90_____________________________________________50\n |
260 -- 266 |
74 -- 80 |
-34.0568 kcal/mol |
9.12339 kcal/mol |
14.5017 kcal/mol |
248 293@LB@ | |@LB@5'-AGA...CGUGG AA AACUC GGAAA A AGGCGGUC-3'@LB@ GGAAG CAGC ACCUGGC GGC UGAG UGGAA CAA@LB@ ::||| |||| |||:||| ||| |:|| ||||| |||@LB@ UUUUC GUCG UGGGCCG CCG AUUC ACCUU GUU@LB@ 3'- G A AUUAUG C ACACU...GCG-5'@LB@ | |@LB@ 90 50@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -34.0568 kcal/mol@LB@Unfolding Energy - mRNA 9.12339 kcal/mol@LB@Unfolding Energy - sRNA 14.5017 kcal/mol@LB@@LB@Position - mRNA 249 -- 292@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 74 -- 80@LB@ |
77 |
0.00734 |
0.3134 |
b1793 |
yoaF |
-12.59 |
0.071143 |
233 -- 250 |
68 -- 86 |
DUF333 family outer membrane lipoprotein |
|
_____________232_________________251\n_____________|___________________|\n5'-GAU...UGCUU___________________UUCAA...UGG-3'\n______________GCUGGU_CCUGGCUGGUUG\n______________||::|:_||:||||||:|:\n______________CGGUCG_GGGCCGACCGAU\n_______3'-UUUU______U____________UCAUU...GCG-5'\n_____________|___________________|\n_____________87__________________67\n |
243 -- 249 |
69 -- 75 |
-29.581 kcal/mol |
5.32768 kcal/mol |
11.6617 kcal/mol |
232 251@LB@ | |@LB@5'-GAU...UGCUU UUCAA...UGG-3'@LB@ GCUGGU CCUGGCUGGUUG@LB@ ||::|: ||:||||||:|:@LB@ CGGUCG GGGCCGACCGAU@LB@ 3'-UUUU U UCAUU...GCG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -29.581 kcal/mol@LB@Unfolding Energy - mRNA 5.32768 kcal/mol@LB@Unfolding Energy - sRNA 11.6617 kcal/mol@LB@@LB@Position - mRNA 233 -- 250@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 69 -- 75@LB@ |
78 |
0.00737 |
0.3134 |
b2299 |
yfcD |
-10.35 |
0.165972 |
38 -- 78 |
49 -- 90 |
putative NUDIX hydrolase |
|
_____________37__________________________________________79\n_____________|___________________________________________|\n5'-AGA...AUUCC_____G____A_______GA____U_GC_______________ACGUA...AGU-3'\n______________GAAAG_CGGU_AUCCGGC__GUUA_G__AUGCUGGA__UAAUG\n______________:||||_|:|:_|:|||||__|:||_|__||:|||||__:||||\n______________UUUUC_GUCG_UGGGCCG__CGAU_C__UAUGACCU__GUUAC\n___________3'-_____G____________AC____U_AU________UC_____ACUCG...GCG-5'\n______________|__________________________________________|\n______________90_________________________________________48\n |
67 -- 73 |
56 -- 62 |
-41.1069 kcal/mol |
16.14 kcal/mol |
14.6203 kcal/mol |
37 79@LB@ | |@LB@5'-AGA...AUUCC G A GA U GC ACGUA...AGU-3'@LB@ GAAAG CGGU AUCCGGC GUUA G AUGCUGGA UAAUG@LB@ :|||| |:|: |:||||| |:|| | ||:||||| :||||@LB@ UUUUC GUCG UGGGCCG CGAU C UAUGACCU GUUAC@LB@ 3'- G AC U AU UC ACUCG...GCG-5'@LB@ | |@LB@ 90 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -41.1069 kcal/mol@LB@Unfolding Energy - mRNA 16.14 kcal/mol@LB@Unfolding Energy - sRNA 14.6203 kcal/mol@LB@@LB@Position - mRNA 38 -- 78@LB@Position - sRNA 49 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 56 -- 62@LB@ |
79 |
0.007454 |
0.3134 |
b1912 |
pgsA |
-16.66 |
0.014365 |
232 -- 294 |
1 -- 48 |
phosphatidylglycerophosphate synthetase |
|
_____________231_____________________________________________________________295\n_____________|_______________________________________________________________|\n5'-GUC...UACAC__UU_C_____AUC___A__CCA________AUU______UUAUCUGCCUGUCA_________CGUUUG-3'\n______________UG__C_GUGUC___CUU_UC___UUCUUUGU___GGUCUU______________CCUGGUCGC\n______________||__|_:||||___|||_||___||||::|:___||||||______________||||:||||\n______________AC__G_UACAG___GAA_AG___AAGAGGCG___CCAGAA______________GGACUAGCG\n3'-UUU...GUUAC__UC_U_____CAC______UCC________CUC_____________________________-5'\n_____________|______________________________________________________________|\n_____________49_____________________________________________________________1\n |
288 -- 294 |
1 -- 7 |
-35.4585 kcal/mol |
5.43289 kcal/mol |
13.3693 kcal/mol |
231 295@LB@ | |@LB@5'-GUC...UACAC UU C AUC A CCA AUU UUAUCUGCCUGUCA CGUUUG-3'@LB@ UG C GUGUC CUU UC UUCUUUGU GGUCUU CCUGGUCGC@LB@ || | :|||| ||| || ||||::|: |||||| ||||:||||@LB@ AC G UACAG GAA AG AAGAGGCG CCAGAA GGACUAGCG@LB@3'-UUU...GUUAC UC U CAC UCC CUC -5'@LB@ | |@LB@ 49 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -35.4585 kcal/mol@LB@Unfolding Energy - mRNA 5.43289 kcal/mol@LB@Unfolding Energy - sRNA 13.3693 kcal/mol@LB@@LB@Position - mRNA 232 -- 294@LB@Position - sRNA 1 -- 48@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 1 -- 7@LB@ |
80 |
0.007461 |
0.3134 |
b0925 |
ldtD |
-10.36 |
0.165445 |
187 -- 206 |
37 -- 61 |
murein L D-transpeptidase |
|
_____________186_______________________207\n_____________|_________________________|\n5'-AAG...UAAAA__A______________G_______CUUAA...CUG-3'\n______________AC_GGGGGCA_____AG_GAUGUUG\n______________||_||::|||_____||_:||||:|\n______________UG_CCUUCGU_____UC_UUACAGC\n3'-UUU...CAUUA__A_______UACAC__G_______ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
200 -- 206 |
37 -- 43 |
-19.2999 kcal/mol |
5.64293 kcal/mol |
3.30158 kcal/mol |
186 207@LB@ | |@LB@5'-AAG...UAAAA A G CUUAA...CUG-3'@LB@ AC GGGGGCA AG GAUGUUG@LB@ || ||::||| || :||||:|@LB@ UG CCUUCGU UC UUACAGC@LB@3'-UUU...CAUUA A UACAC G ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -19.2999 kcal/mol@LB@Unfolding Energy - mRNA 5.64293 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 37 -- 43@LB@ |
81 |
0.008086 |
0.3318 |
b3114 |
tdcE |
-10.99 |
0.130865 |
237 -- 290 |
38 -- 86 |
pyruvate formate-lyase 4/2-ketobutyrate formate-lyase |
|
_____________236_____________________________________________________291\n_____________|_______________________________________________________|\n5'-AGA...UGUAC____A___A____U_____UUAA_____CGG_______AAACGAAAU________CGCGA...UUA-3'\n______________GCCG_CGC_UGGC_UGGCU____AGGUA___ACUGGAA__________UAAUGUC\n______________|||:_|:|_:|||_|||||____|:|||___|||||||__________:||||||\n______________CGGU_GUG_GCCG_ACCGA____UUCAU___UGACCUU__________GUUACAG\n_______3'-UUUU____C___G___________________UA________CGUUACACUC_______CACGA...GCG-5'\n_____________|_______________________________________________________|\n_____________87______________________________________________________37\n |
284 -- 290 |
38 -- 44 |
-39.8415 kcal/mol |
13.9412 kcal/mol |
14.9106 kcal/mol |
236 291@LB@ | |@LB@5'-AGA...UGUAC A A U UUAA CGG AAACGAAAU CGCGA...UUA-3'@LB@ GCCG CGC UGGC UGGCU AGGUA ACUGGAA UAAUGUC@LB@ |||: |:| :||| ||||| |:||| ||||||| :||||||@LB@ CGGU GUG GCCG ACCGA UUCAU UGACCUU GUUACAG@LB@ 3'-UUUU C G UA CGUUACACUC CACGA...GCG-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -39.8415 kcal/mol@LB@Unfolding Energy - mRNA 13.9412 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 237 -- 290@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
82 |
0.008223 |
0.3318 |
b1654 |
grxD |
-11.69 |
0.100410 |
189 -- 207 |
43 -- 58 |
glutaredoxin-4 |
|
_____________188_________________208\n_____________|___________________|\n5'-AAA...UUUGA________GACAA______CCACU...CUG-3'\n______________GGAAGCAA_____UGAGCA\n______________||||||||_____||||||\n______________CCUUCGUU_____ACUCGU\n3'-UUU...UAUGA________AC_________UACAG...GCG-5'\n_____________|___________________|\n_____________59__________________42\n |
190 -- 196 |
51 -- 57 |
-19.1647 kcal/mol |
4.26252 kcal/mol |
3.20949 kcal/mol |
188 208@LB@ | |@LB@5'-AAA...UUUGA GACAA CCACU...CUG-3'@LB@ GGAAGCAA UGAGCA@LB@ |||||||| ||||||@LB@ CCUUCGUU ACUCGU@LB@3'-UUU...UAUGA AC UACAG...GCG-5'@LB@ | |@LB@ 59 42@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -19.1647 kcal/mol@LB@Unfolding Energy - mRNA 4.26252 kcal/mol@LB@Unfolding Energy - sRNA 3.20949 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 43 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
83 |
0.008249 |
0.3318 |
b0183 |
rnhB |
-13.04 |
0.059790 |
42 -- 55 |
44 -- 58 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________41______________56\n_____________|_______________|\n5'-AAU...UUGCA_______________CGCAA...UCC-3'\n______________GGAAG_AGUGUGAGC\n______________|||||_|:|||||||\n______________CCUUC_UUACACUCG\n3'-UUU...UAUGA_____G_________UUACA...GCG-5'\n_____________|_______________|\n_____________59______________43\n |
49 -- 55 |
44 -- 50 |
-21.6429 kcal/mol |
5.39444 kcal/mol |
3.20799 kcal/mol |
41 56@LB@ | |@LB@5'-AAU...UUGCA CGCAA...UCC-3'@LB@ GGAAG AGUGUGAGC@LB@ ||||| |:|||||||@LB@ CCUUC UUACACUCG@LB@3'-UUU...UAUGA G UUACA...GCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -21.6429 kcal/mol@LB@Unfolding Energy - mRNA 5.39444 kcal/mol@LB@Unfolding Energy - sRNA 3.20799 kcal/mol@LB@@LB@Position - mRNA 42 -- 55@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 44 -- 50@LB@ |
84 |
0.008296 |
0.3318 |
b0892 |
rarA |
-13.69 |
0.046473 |
183 -- 215 |
37 -- 66 |
recombination intermediate processing DNA-dependent ATPase |
|
_____________182_________________________________216\n_____________|___________________________________|\n5'-CAA...UCAAC____GUA________CCUGA________UC_____CUCGA...AUU-3'\n______________GUAA_____GAGGCA_____GUGAGCAA__UGUCG\n______________||||_____||:|||_____||||||||__|||||\n______________CAUU_____CUUCGU_____CACUCGUU__ACAGC\n3'-UUU...CGAUU____AUGAC______UA__________________ACGAA...GCG-5'\n_____________|___________________________________|\n_____________67__________________________________36\n |
202 -- 208 |
42 -- 48 |
-25.9915 kcal/mol |
8.99953 kcal/mol |
3.30551 kcal/mol |
182 216@LB@ | |@LB@5'-CAA...UCAAC GUA CCUGA UC CUCGA...AUU-3'@LB@ GUAA GAGGCA GUGAGCAA UGUCG@LB@ |||| ||:||| |||||||| |||||@LB@ CAUU CUUCGU CACUCGUU ACAGC@LB@3'-UUU...CGAUU AUGAC UA ACGAA...GCG-5'@LB@ | |@LB@ 67 36@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -25.9915 kcal/mol@LB@Unfolding Energy - mRNA 8.99953 kcal/mol@LB@Unfolding Energy - sRNA 3.30551 kcal/mol@LB@@LB@Position - mRNA 183 -- 215@LB@Position - sRNA 37 -- 66@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
85 |
0.008408 |
0.3323 |
b1246 |
oppD |
-9.75 |
0.205761 |
38 -- 64 |
37 -- 61 |
oligopeptide ABC transporter ATPase |
|
_____________37__________________________65\n_____________|___________________________|\n5'-AGC...AAGCA_______U___U__C_________G__CGAAC...ACG-3'\n______________GCUGGGG_GCA_UG_UGAGUGAUG_CG\n______________:||||::_|||_||_||||::|||_||\n______________UGACCUU_CGU_AC_ACUCGUUAC_GC\n3'-UUU...CAUUA___________U____________A__ACGAA...GCG-5'\n_____________|___________________________|\n_____________62__________________________36\n |
55 -- 61 |
40 -- 46 |
-27.1525 kcal/mol |
14.0993 kcal/mol |
3.30158 kcal/mol |
37 65@LB@ | |@LB@5'-AGC...AAGCA U U C G CGAAC...ACG-3'@LB@ GCUGGGG GCA UG UGAGUGAUG CG@LB@ :||||:: ||| || ||||::||| ||@LB@ UGACCUU CGU AC ACUCGUUAC GC@LB@3'-UUU...CAUUA U A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -27.1525 kcal/mol@LB@Unfolding Energy - mRNA 14.0993 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 38 -- 64@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 40 -- 46@LB@ |
86 |
0.008505 |
0.3323 |
b0879 |
macB |
-10.85 |
0.137944 |
147 -- 181 |
15 -- 61 |
macrolide ABC transporter peremase/ATPase |
|
_____________146_____________________________________________182\n_____________|_______________________________________________|\n5'-AAU...AAAGG___U__________________AA____________GA__G______CCAAA...CGG-3'\n______________GCU_GAAGC_____GGGCGAUG__GU_______GGU__UU_GUGAGG\n______________:||_|||||_____|:||:|||__||_______|||__|:_|:||||\n______________UGA_CUUCG_____CUCGUUAC__CA_______CCA__AG_CGCUCC\n3'-UUU...CAUUA___C_____UUACA________AG__CGAAAGU___AG__G______CAGAA...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________14\n |
157 -- 163 |
40 -- 46 |
-34.4359 kcal/mol |
9.61218 kcal/mol |
13.9754 kcal/mol |
146 182@LB@ | |@LB@5'-AAU...AAAGG U AA GA G CCAAA...CGG-3'@LB@ GCU GAAGC GGGCGAUG GU GGU UU GUGAGG@LB@ :|| ||||| |:||:||| || ||| |: |:||||@LB@ UGA CUUCG CUCGUUAC CA CCA AG CGCUCC@LB@3'-UUU...CAUUA C UUACA AG CGAAAGU AG G CAGAA...GCG-5'@LB@ | |@LB@ 62 14@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -34.4359 kcal/mol@LB@Unfolding Energy - mRNA 9.61218 kcal/mol@LB@Unfolding Energy - sRNA 13.9754 kcal/mol@LB@@LB@Position - mRNA 147 -- 181@LB@Position - sRNA 15 -- 61@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 40 -- 46@LB@ |
87 |
0.008915 |
0.3393 |
b2530 |
iscS |
-12.30 |
0.079567 |
175 -- 203 |
40 -- 68 |
cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent |
|
_____________174___________________________204\n_____________|_____________________________|\n5'-AAG...GCAUU________UAC_____UUAUA________AAAUU...UUG-3'\n______________GAGUGAUG___GGAGU_____GAGCAAUG\n______________:|||:||:___|:||:_____||||||||\n______________UUCAUUAU___CUUCG_____CUCGUUAC\n3'-UUU...ACCGA________GAC_____UUACA________AGCAC...GCG-5'\n_____________|_____________________________|\n_____________69____________________________39\n |
197 -- 203 |
40 -- 46 |
-22.6486 kcal/mol |
7.04226 kcal/mol |
3.30507 kcal/mol |
174 204@LB@ | |@LB@5'-AAG...GCAUU UAC UUAUA AAAUU...UUG-3'@LB@ GAGUGAUG GGAGU GAGCAAUG@LB@ :|||:||: |:||: ||||||||@LB@ UUCAUUAU CUUCG CUCGUUAC@LB@3'-UUU...ACCGA GAC UUACA AGCAC...GCG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -12.30 kcal/mol@LB@Hybridization Energy -22.6486 kcal/mol@LB@Unfolding Energy - mRNA 7.04226 kcal/mol@LB@Unfolding Energy - sRNA 3.30507 kcal/mol@LB@@LB@Position - mRNA 175 -- 203@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 40 -- 46@LB@ |
88 |
0.008994 |
0.3393 |
b0721 |
sdhC |
-13.41 |
0.051766 |
40 -- 58 |
43 -- 60 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________39__________________59\n_____________|___________________|\n5'-UCC...CGCAU_____________UUU___UGACG...CCG-3'\n______________CUGGAAGCAGUGU___GCA\n______________|||||||||:|||___|||\n______________GACCUUCGUUACA___CGU\n3'-UUU...AUUAU_____________CU____UACAG...GCG-5'\n_____________|___________________|\n_____________61__________________42\n |
46 -- 52 |
48 -- 54 |
-24.0509 kcal/mol |
7.34137 kcal/mol |
3.29917 kcal/mol |
39 59@LB@ | |@LB@5'-UCC...CGCAU UUU UGACG...CCG-3'@LB@ CUGGAAGCAGUGU GCA@LB@ |||||||||:||| |||@LB@ GACCUUCGUUACA CGU@LB@3'-UUU...AUUAU CU UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -24.0509 kcal/mol@LB@Unfolding Energy - mRNA 7.34137 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 40 -- 58@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 48 -- 54@LB@ |
89 |
0.009246 |
0.3393 |
b1279 |
yciS |
-12.08 |
0.086714 |
189 -- 204 |
46 -- 61 |
DUF1049 family inner membrane protein function unknown |
|
_____________188______________205\n_____________|________________|\n5'-ACC...ACAUA__G_____________AAUAU...UGU-3'\n______________AC_GGAAGUAAUGUGA\n______________||_|||||:|||||||\n______________UG_CCUUCGUUACACU\n3'-UUU...CAUUA__A_____________CGUUA...GCG-5'\n_____________|________________|\n_____________62_______________45\n |
198 -- 204 |
46 -- 52 |
-21.4875 kcal/mol |
6.16612 kcal/mol |
3.24422 kcal/mol |
188 205@LB@ | |@LB@5'-ACC...ACAUA G AAUAU...UGU-3'@LB@ AC GGAAGUAAUGUGA@LB@ || |||||:|||||||@LB@ UG CCUUCGUUACACU@LB@3'-UUU...CAUUA A CGUUA...GCG-5'@LB@ | |@LB@ 62 45@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -21.4875 kcal/mol@LB@Unfolding Energy - mRNA 6.16612 kcal/mol@LB@Unfolding Energy - sRNA 3.24422 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 46 -- 61@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 46 -- 52@LB@ |
90 |
0.009279 |
0.3393 |
b0817 |
mntR |
-11.60 |
0.104050 |
186 -- 211 |
37 -- 65 |
Mn(2+)-responsive manganese regulon transcriptional regulator |
|
_____________185___________________________212\n_____________|_____________________________|\n5'-CUU...CACCA_____A________CAA_____C______CGCAG...AUC-3'\n______________UAAUG__GGAAGCA___UGAGU___GUCG\n______________||||:__|||||||___||||:___||||\n______________AUUAU__CCUUCGU___ACUCG___CAGC\n3'-UUU...GAUUC_____GA_______UAC_____UUA____ACGAA...GCG-5'\n_____________|_____________________________|\n_____________66____________________________36\n |
192 -- 198 |
52 -- 58 |
-22.6144 kcal/mol |
7.71005 kcal/mol |
3.30549 kcal/mol |
185 212@LB@ | |@LB@5'-CUU...CACCA A CAA C CGCAG...AUC-3'@LB@ UAAUG GGAAGCA UGAGU GUCG@LB@ ||||: ||||||| ||||: ||||@LB@ AUUAU CCUUCGU ACUCG CAGC@LB@3'-UUU...GAUUC GA UAC UUA ACGAA...GCG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -22.6144 kcal/mol@LB@Unfolding Energy - mRNA 7.71005 kcal/mol@LB@Unfolding Energy - sRNA 3.30549 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
91 |
0.009487 |
0.3393 |
b4148 |
sugE |
-13.59 |
0.048204 |
42 -- 77 |
12 -- 46 |
multidrug efflux system protein |
|
_____________41___________________________________78\n_____________|____________________________________|\n5'-CGC...ACGAC___U_________CG__UGUU__________UA___ACAAA...UUA-3'\n______________AGC_GUGUCGUGC__UU____UUUUCUGCGA__GUC\n______________|||_:||||||||__|:____||:||:||||__|||\n______________UCG_UACAGCACG__AG____AAGAGGCGCU__CAG\n3'-UUU...UACAC___U_________AA__UCC___________CC___AAGGA...GCG-5'\n_____________|____________________________________|\n_____________47___________________________________11\n |
66 -- 72 |
17 -- 23 |
-35.5696 kcal/mol |
9.46718 kcal/mol |
12.5096 kcal/mol |
41 78@LB@ | |@LB@5'-CGC...ACGAC U CG UGUU UA ACAAA...UUA-3'@LB@ AGC GUGUCGUGC UU UUUUCUGCGA GUC@LB@ ||| :|||||||| |: ||:||:|||| |||@LB@ UCG UACAGCACG AG AAGAGGCGCU CAG@LB@3'-UUU...UACAC U AA UCC CC AAGGA...GCG-5'@LB@ | |@LB@ 47 11@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -35.5696 kcal/mol@LB@Unfolding Energy - mRNA 9.46718 kcal/mol@LB@Unfolding Energy - sRNA 12.5096 kcal/mol@LB@@LB@Position - mRNA 42 -- 77@LB@Position - sRNA 12 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 17 -- 23@LB@ |
92 |
0.009626 |
0.3393 |
b3811 |
xerC |
-15.13 |
0.026359 |
57 -- 92 |
33 -- 64 |
site-specific tyrosine recombinase |
|
_____________56___________________________________93\n_____________|____________________________________|\n5'-CCA...AUGUC______G__________C___UUUG___________GUUUA...UUG-3'\n______________GAUGCU_GGAAGCGAUG_UGA____GGUGUCGUGCU\n______________:||:||_||||||:|||_|||____::|||||||||\n______________UUAUGA_CCUUCGUUAC_ACU____UUACAGCACGA\n3'-UUU...AUUCA_____________________CG_____________AAGUC...GCG-5'\n_____________|____________________________________|\n_____________65___________________________________32\n |
83 -- 89 |
36 -- 42 |
-41.1335 kcal/mol |
19.2369 kcal/mol |
6.76965 kcal/mol |
56 93@LB@ | |@LB@5'-CCA...AUGUC G C UUUG GUUUA...UUG-3'@LB@ GAUGCU GGAAGCGAUG UGA GGUGUCGUGCU@LB@ :||:|| ||||||:||| ||| ::|||||||||@LB@ UUAUGA CCUUCGUUAC ACU UUACAGCACGA@LB@3'-UUU...AUUCA CG AAGUC...GCG-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -15.13 kcal/mol@LB@Hybridization Energy -41.1335 kcal/mol@LB@Unfolding Energy - mRNA 19.2369 kcal/mol@LB@Unfolding Energy - sRNA 6.76965 kcal/mol@LB@@LB@Position - mRNA 57 -- 92@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 36 -- 42@LB@ |
93 |
0.009691 |
0.3393 |
b2959 |
yggL |
-10.23 |
0.172987 |
12 -- 59 |
38 -- 83 |
DUF469 family protein |
|
_____________11_________________________________________________60\n_____________|__________________________________________________|\n5'-GUA...CAUAU___GA___A____GAACCUU____________U___CU__A_________UUCUA...CAU-3'\n______________GGC__CCG_CUGG_______AUGC_GGAA_CA_AUG__UG_AGUGAUGUC\n______________:||__|||_||||_______||:|_||||_||_|||__||_||::|||||\n______________UCG__GGC_GACC_______UAUG_CCUU_GU_UAC__AC_UCGUUACAG\n____3'-UUUUCGG___UG___C____GAUUCAU____A____C____________________CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________37\n |
53 -- 59 |
38 -- 44 |
-35.0381 kcal/mol |
9.91615 kcal/mol |
14.8888 kcal/mol |
11 60@LB@ | |@LB@5'-GUA...CAUAU GA A GAACCUU U CU A UUCUA...CAU-3'@LB@ GGC CCG CUGG AUGC GGAA CA AUG UG AGUGAUGUC@LB@ :|| ||| |||| ||:| |||| || ||| || ||::|||||@LB@ UCG GGC GACC UAUG CCUU GU UAC AC UCGUUACAG@LB@ 3'-UUUUCGG UG C GAUUCAU A C CACGA...GCG-5'@LB@ | |@LB@ 84 37@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -35.0381 kcal/mol@LB@Unfolding Energy - mRNA 9.91615 kcal/mol@LB@Unfolding Energy - sRNA 14.8888 kcal/mol@LB@@LB@Position - mRNA 12 -- 59@LB@Position - sRNA 38 -- 83@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 38 -- 44@LB@ |
94 |
0.009954 |
0.3393 |
b2208 |
napF |
-14.80 |
0.029998 |
183 -- 242 |
1 -- 65 |
ferredoxin-type protein role in electron transfer to periplasmic nitrate reductase NapA |
|
_____________182____________________________________________________________________243\n_____________|______________________________________________________________________|\n5'-CCA...CGCGU_____A______GU________AG_U__A_____A_____________U_____CAUA__CA________UGGCG...UUC-3'\n______________UAAUG_UGGAAG__CAAUGUGA__A_UG___UGC________UC_CCG_CGGGG____CU__CUGGUCGC\n______________||||:_||||||__||||||||__|_||___|||________||_|||_||:||____||__|||:||||\n______________AUUAU_ACCUUC__GUUACACU__U_AC___ACG________AG_GGC_GCUCC____GA__GACUAGCG\n3'-UUU...GAUUC_____G________________CG_U__AGC___AAAGUCCA__A_________CA____AG________-5'\n_____________|_____________________________________________________________________|\n_____________66____________________________________________________________________1\n |
236 -- 242 |
1 -- 7 |
-47.7557 kcal/mol |
18.8316 kcal/mol |
14.1245 kcal/mol |
182 243@LB@ | |@LB@5'-CCA...CGCGU A GU AG U A A U CAUA CA UGGCG...UUC-3'@LB@ UAAUG UGGAAG CAAUGUGA A UG UGC UC CCG CGGGG CU CUGGUCGC@LB@ ||||: |||||| |||||||| | || ||| || ||| ||:|| || |||:||||@LB@ AUUAU ACCUUC GUUACACU U AC ACG AG GGC GCUCC GA GACUAGCG@LB@3'-UUU...GAUUC G CG U AGC AAAGUCCA A CA AG -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -47.7557 kcal/mol@LB@Unfolding Energy - mRNA 18.8316 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 183 -- 242@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 1 -- 7@LB@ |
95 |
0.009964 |
0.3393 |
b3902 |
rhaD |
-16.21 |
0.017174 |
243 -- 283 |
43 -- 89 |
rhamnulose-1-phosphate aldolase |
|
_____________242_______________________________________________284\n_____________|_________________________________________________|\n5'-AGA...UGAUC_______C____GA__C________AAG_____________________CAACG...UGA-3'\n______________AAAGCCA_CACC__CG_CUGGCUGA_____GCUGGGA______UGAGCG\n______________|||||||_||||__||_||||||:|_____:||||:|______|||||:\n______________UUUCGGU_GUGG__GC_GACCGAUU_____UGACCUU______ACUCGU\n__________3'-U_______C________C________CAUUA_______CGUUAC______UACAG...GCG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________42\n |
271 -- 277 |
55 -- 61 |
-44.1539 kcal/mol |
13.0365 kcal/mol |
14.9102 kcal/mol |
242 284@LB@ | |@LB@5'-AGA...UGAUC C GA C AAG CAACG...UGA-3'@LB@ AAAGCCA CACC CG CUGGCUGA GCUGGGA UGAGCG@LB@ ||||||| |||| || ||||||:| :||||:| |||||:@LB@ UUUCGGU GUGG GC GACCGAUU UGACCUU ACUCGU@LB@ 3'-U C C CAUUA CGUUAC UACAG...GCG-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -16.21 kcal/mol@LB@Hybridization Energy -44.1539 kcal/mol@LB@Unfolding Energy - mRNA 13.0365 kcal/mol@LB@Unfolding Energy - sRNA 14.9102 kcal/mol@LB@@LB@Position - mRNA 243 -- 283@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 55 -- 61@LB@ |
96 |
0.01001 |
0.3393 |
b2714 |
ascG |
-11.75 |
0.098239 |
209 -- 220 |
53 -- 64 |
asc operon transcriptional repressor; prpBC operon repressor |
|
_____________208__________221\n_____________|____________|\n5'-AAA...ACGAC____________GGCGA...AAG-3'\n______________GAUGCUGGAAGU\n______________:||:|||||||:\n______________UUAUGACCUUCG\n3'-UUU...AUUCA____________UUACA...GCG-5'\n_____________|____________|\n_____________65___________52\n |
214 -- 220 |
53 -- 59 |
-16.9486 kcal/mol |
2.31342 kcal/mol |
2.88502 kcal/mol |
208 221@LB@ | |@LB@5'-AAA...ACGAC GGCGA...AAG-3'@LB@ GAUGCUGGAAGU@LB@ :||:|||||||:@LB@ UUAUGACCUUCG@LB@3'-UUU...AUUCA UUACA...GCG-5'@LB@ | |@LB@ 65 52@LB@@LB@@LB@Energy -11.75 kcal/mol@LB@Hybridization Energy -16.9486 kcal/mol@LB@Unfolding Energy - mRNA 2.31342 kcal/mol@LB@Unfolding Energy - sRNA 2.88502 kcal/mol@LB@@LB@Position - mRNA 209 -- 220@LB@Position - sRNA 53 -- 64@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 53 -- 59@LB@ |
97 |
0.0101 |
0.3393 |
b0192 |
nlpE |
-13.07 |
0.059097 |
192 -- 230 |
40 -- 68 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________191_____________________________________231\n_____________|_______________________________________|\n5'-UCA...AAAAG___GA___GA___UGAAAA_______A____CA______GCUGU...CGC-3'\n______________AAG__AUG__UGG______AAGCGAU_GUGA__GCGAUG\n______________|||__||:__|||______||||:||_||||__||:|||\n______________UUC__UAU__ACC______UUCGUUA_CACU__CGUUAC\n3'-UUU...ACCGA___AU___G______________________________AGCAC...GCG-5'\n_____________|_______________________________________|\n_____________69______________________________________39\n |
211 -- 217 |
50 -- 56 |
-20.8621 kcal/mol |
4.48665 kcal/mol |
3.30507 kcal/mol |
191 231@LB@ | |@LB@5'-UCA...AAAAG GA GA UGAAAA A CA GCUGU...CGC-3'@LB@ AAG AUG UGG AAGCGAU GUGA GCGAUG@LB@ ||| ||: ||| ||||:|| |||| ||:|||@LB@ UUC UAU ACC UUCGUUA CACU CGUUAC@LB@3'-UUU...ACCGA AU G AGCAC...GCG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -13.07 kcal/mol@LB@Hybridization Energy -20.8621 kcal/mol@LB@Unfolding Energy - mRNA 4.48665 kcal/mol@LB@Unfolding Energy - sRNA 3.30507 kcal/mol@LB@@LB@Position - mRNA 192 -- 230@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 50 -- 56@LB@ |
98 |
0.01017 |
0.3393 |
b1234 |
rssA |
-9.29 |
0.241768 |
243 -- 258 |
1 -- 20 |
putative patatin-like family phospholipase |
|
_____________242___________________259\n_____________|_____________________|\n5'-GAU...GCGCG_____A_______________AUAUU...AAA-3'\n______________GCGAG_GGU_____UGGUCGC\n______________|||||_|||_____||:||||\n______________CGCUC_CCA_____ACUAGCG\n3'-UUU...AGAGG_________GAAGG_______-5'\n_____________|____________________|\n_____________21___________________1\n |
252 -- 258 |
1 -- 7 |
-21.3571 kcal/mol |
5.88093 kcal/mol |
6.18231 kcal/mol |
242 259@LB@ | |@LB@5'-GAU...GCGCG A AUAUU...AAA-3'@LB@ GCGAG GGU UGGUCGC@LB@ ||||| ||| ||:||||@LB@ CGCUC CCA ACUAGCG@LB@3'-UUU...AGAGG GAAGG -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -21.3571 kcal/mol@LB@Unfolding Energy - mRNA 5.88093 kcal/mol@LB@Unfolding Energy - sRNA 6.18231 kcal/mol@LB@@LB@Position - mRNA 243 -- 258@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 1 -- 7@LB@ |
99 |
0.01025 |
0.3393 |
b1887 |
cheW |
-9.13 |
0.255901 |
16 -- 66 |
38 -- 87 |
purine-binding chemotaxis protein |
|
_____________15___________________________________________________67\n_____________|____________________________________________________|\n5'-GUG...UAAUU_____A____A___UG_______AAACC____A______CUAUC____A___CCCGG...UCC-3'\n______________GGUCA_CACC_GGU__UGGUUAA______UUG_AAGUAA_____GCAA_GUC\n______________:|:||_||||_||:__|||:|||______:||_|||:||_____||||_|||\n______________UCGGU_GUGG_CCG__ACCGAUU______GAC_UUCGUU_____CGUU_CAG\n________3'-UUU_____C____G____________CAUUAU___C______ACACU____A___CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________88___________________________________________________37\n |
32 -- 38 |
67 -- 73 |
-34.6295 kcal/mol |
10.5892 kcal/mol |
14.9106 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...UAAUU A A UG AAACC A CUAUC A CCCGG...UCC-3'@LB@ GGUCA CACC GGU UGGUUAA UUG AAGUAA GCAA GUC@LB@ :|:|| |||| ||: |||:||| :|| |||:|| |||| |||@LB@ UCGGU GUGG CCG ACCGAUU GAC UUCGUU CGUU CAG@LB@ 3'-UUU C G CAUUAU C ACACU A CACGA...GCG-5'@LB@ | |@LB@ 88 37@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -34.6295 kcal/mol@LB@Unfolding Energy - mRNA 10.5892 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 38 -- 87@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 67 -- 73@LB@ |
100 |
0.01027 |
0.3393 |
b0661 |
miaB |
-11.26 |
0.118120 |
162 -- 200 |
37 -- 86 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________161_________________________________________________201\n_____________|___________________________________________________|\n5'-CGC...UAUGC___CU_______________C________UC____________________AUGAC...AAC-3'\n______________GCC__GCAUUC__CUGGCUA_____UAUU____GCAA___GAGCAA_GUCG\n______________|||__|||::|__|||||||_____||:|____||||___||||||_||||\n______________CGG__CGUGGG__GACCGAU_____AUGA____CGUU___CUCGUU_CAGC\n_______3'-UUUU___U_______CC_______UCAUU____CCUU____ACA______A____ACGAA...GCG-5'\n_____________|___________________________________________________|\n_____________87__________________________________________________36\n |
173 -- 179 |
68 -- 74 |
-35.2592 kcal/mol |
9.08526 kcal/mol |
14.9108 kcal/mol |
161 201@LB@ | |@LB@5'-CGC...UAUGC CU C UC AUGAC...AAC-3'@LB@ GCC GCAUUC CUGGCUA UAUU GCAA GAGCAA GUCG@LB@ ||| |||::| ||||||| ||:| |||| |||||| ||||@LB@ CGG CGUGGG GACCGAU AUGA CGUU CUCGUU CAGC@LB@ 3'-UUUU U CC UCAUU CCUU ACA A ACGAA...GCG-5'@LB@ | |@LB@ 87 36@LB@@LB@@LB@Energy -11.26 kcal/mol@LB@Hybridization Energy -35.2592 kcal/mol@LB@Unfolding Energy - mRNA 9.08526 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 162 -- 200@LB@Position - sRNA 37 -- 86@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 68 -- 74@LB@ |
101 |
0.01031 |
0.3393 |
b2314 |
dedD |
-14.11 |
0.039362 |
188 -- 259 |
13 -- 86 |
membrane-anchored periplasmic protein involved in septation |
|
_____________187______________________________________________________________________________260\n_____________|________________________________________________________________________________|\n5'-UUG...UUGAC__G__G_GAAG_______________GUUUCA___U____UA_______CGA______________GG_____U______GAUUG...AUU-3'\n______________GC_AG_A____CGG_UGGC_AAGUAA______GAA_CGGU__GUGGGCA___UCGUGCU____GGU____CGC_GGGGGU\n______________||_||_|____|||_||||_||||||______|||_|::|__|||:|||___|||||||____|||____|||_|:||||\n______________CG_UC_U____GCC_ACCG_UUCAUU______CUU_GUUA__CACUCGU___AGCACGA____CCA____GCG_CUCCCA\n_______3'-UUUU__G__G_GG_____G____A______AUGAC____C_____________UAC_______AAGU___AGAG__________GAAGG...GCG-5'\n_____________|________________________________________________________________________________|\n_____________87_______________________________________________________________________________12\n |
238 -- 244 |
33 -- 39 |
-62.0732 kcal/mol |
22.3094 kcal/mol |
25.6538 kcal/mol |
187 260@LB@ | |@LB@5'-UUG...UUGAC G G GAAG GUUUCA U UA CGA GG U GAUUG...AUU-3'@LB@ GC AG A CGG UGGC AAGUAA GAA CGGU GUGGGCA UCGUGCU GGU CGC GGGGGU@LB@ || || | ||| |||| |||||| ||| |::| |||:||| ||||||| ||| ||| |:||||@LB@ CG UC U GCC ACCG UUCAUU CUU GUUA CACUCGU AGCACGA CCA GCG CUCCCA@LB@ 3'-UUUU G G GG G A AUGAC C UAC AAGU AGAG GAAGG...GCG-5'@LB@ | |@LB@ 87 12@LB@@LB@@LB@Energy -14.11 kcal/mol@LB@Hybridization Energy -62.0732 kcal/mol@LB@Unfolding Energy - mRNA 22.3094 kcal/mol@LB@Unfolding Energy - sRNA 25.6538 kcal/mol@LB@@LB@Position - mRNA 188 -- 259@LB@Position - sRNA 13 -- 86@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
102 |
0.01034 |
0.3393 |
b3128 |
garD |
-8.06 |
0.364232 |
93 -- 113 |
5 -- 25 |
D-galactarate dehydrogenase |
|
_____________92____________________114\n_____________|_____________________|\n5'-AUA...UCACA________UUUAAAC______CAUUC...UGA-3'\n______________UUUCUGCG_______UCCUGA\n______________|:||:|||_______||||||\n______________AGAGGCGC_______AGGACU\n3'-UUU...GUCCA________UCCCAGA______AGCG-5'\n_____________|_____________________|\n_____________26____________________4\n |
94 -- 100 |
18 -- 24 |
-19.1191 kcal/mol |
3.34271 kcal/mol |
7.71155 kcal/mol |
92 114@LB@ | |@LB@5'-AUA...UCACA UUUAAAC CAUUC...UGA-3'@LB@ UUUCUGCG UCCUGA@LB@ |:||:||| ||||||@LB@ AGAGGCGC AGGACU@LB@3'-UUU...GUCCA UCCCAGA AGCG-5'@LB@ | |@LB@ 26 4@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -19.1191 kcal/mol@LB@Unfolding Energy - mRNA 3.34271 kcal/mol@LB@Unfolding Energy - sRNA 7.71155 kcal/mol@LB@@LB@Position - mRNA 93 -- 113@LB@Position - sRNA 5 -- 25@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 18 -- 24@LB@ |
103 |
0.0104 |
0.3393 |
b2711 |
norW |
-11.75 |
0.098250 |
192 -- 208 |
42 -- 58 |
NADH:flavorubredoxin oxidoreductase |
|
_____________191_______________209\n_____________|_________________|\n5'-GAA...GCAUC________AA_______CGGCA...UUG-3'\n______________GGAGGCAA__UGAGUAA\n______________|||:||||__||||:||\n______________CCUUCGUU__ACUCGUU\n3'-UUU...UAUGA________AC_______ACAGC...GCG-5'\n_____________|_________________|\n_____________59________________41\n |
202 -- 208 |
42 -- 48 |
-20.2467 kcal/mol |
5.28663 kcal/mol |
3.2101 kcal/mol |
191 209@LB@ | |@LB@5'-GAA...GCAUC AA CGGCA...UUG-3'@LB@ GGAGGCAA UGAGUAA@LB@ |||:|||| ||||:||@LB@ CCUUCGUU ACUCGUU@LB@3'-UUU...UAUGA AC ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -11.75 kcal/mol@LB@Hybridization Energy -20.2467 kcal/mol@LB@Unfolding Energy - mRNA 5.28663 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 192 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
104 |
0.01058 |
0.3418 |
b1475 |
fdnH |
-14.92 |
0.028592 |
64 -- 96 |
25 -- 61 |
formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible |
|
_____________63____________________________________97\n_____________|_____________________________________|\n5'-CGC...AAUCC_________UU______________C__GUAA_____AUAUC...UUA-3'\n______________ACUGG_GGC____UGAG_GGUGUCG_GC____AGGUU\n______________|||||_:||____||||_::|||||_||____|||||\n______________UGACC_UCG____ACUC_UUACAGC_CG____UCCAA\n3'-UUU...CAUUA_____U___UUAC____G_______A__AAAG_____GAGGC...GCG-5'\n_____________|_____________________________________|\n_____________62____________________________________24\n |
78 -- 84 |
37 -- 43 |
-32.5853 kcal/mol |
9.68233 kcal/mol |
7.98175 kcal/mol |
63 97@LB@ | |@LB@5'-CGC...AAUCC UU C GUAA AUAUC...UUA-3'@LB@ ACUGG GGC UGAG GGUGUCG GC AGGUU@LB@ ||||| :|| |||| ::||||| || |||||@LB@ UGACC UCG ACUC UUACAGC CG UCCAA@LB@3'-UUU...CAUUA U UUAC G A AAAG GAGGC...GCG-5'@LB@ | |@LB@ 62 24@LB@@LB@@LB@Energy -14.92 kcal/mol@LB@Hybridization Energy -32.5853 kcal/mol@LB@Unfolding Energy - mRNA 9.68233 kcal/mol@LB@Unfolding Energy - sRNA 7.98175 kcal/mol@LB@@LB@Position - mRNA 64 -- 96@LB@Position - sRNA 25 -- 61@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 37 -- 43@LB@ |
105 |
0.01075 |
0.3439 |
b2457 |
eutM |
-13.65 |
0.047053 |
202 -- 241 |
1 -- 59 |
ethanolamine utilization protein putative carboxysome structural protein |
|
_____________201__________________________________________________________242\n_____________|____________________________________________________________|\n5'-UAU...CACAA________UU_____G____A___AAA_________________________________ACUGA...UUA-3'\n______________UGGAAGCA_____AG_AAUG_UCG______________CC_CGGGG_____CCUGGUUGC\n______________||||||||_____||_||||_|||______________||_||:||_____||||:|:||\n______________ACCUUCGU_____UC_UUAC_AGC______________GG_GCUCC_____GGACUAGCG\n3'-UUU...UUAUG________UACAC__G________ACGAAAGUCCAAGA__C_____CAGAA_________-5'\n_____________|___________________________________________________________|\n_____________60__________________________________________________________1\n |
235 -- 241 |
1 -- 7 |
-38.4359 kcal/mol |
10.6717 kcal/mol |
14.1095 kcal/mol |
201 242@LB@ | |@LB@5'-UAU...CACAA UU G A AAA ACUGA...UUA-3'@LB@ UGGAAGCA AG AAUG UCG CC CGGGG CCUGGUUGC@LB@ |||||||| || |||| ||| || ||:|| ||||:|:||@LB@ ACCUUCGU UC UUAC AGC GG GCUCC GGACUAGCG@LB@3'-UUU...UUAUG UACAC G ACGAAAGUCCAAGA C CAGAA -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -38.4359 kcal/mol@LB@Unfolding Energy - mRNA 10.6717 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 202 -- 241@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 1 -- 7@LB@ |
106 |
0.01088 |
0.3447 |
b3543 |
dppB |
-11.69 |
0.100651 |
144 -- 153 |
41 -- 50 |
dipeptide/heme ABC transporter permease |
|
_____________143________154\n_____________|__________|\n5'-CGG...UGAUU__________ACAGA...AUC-3'\n______________UGUGAGCAAU\n______________||||||||||\n______________ACACUCGUUA\n3'-UUU...UCGUU__________CAGCA...GCG-5'\n_____________|__________|\n_____________51_________40\n |
147 -- 153 |
41 -- 47 |
-14.8509 kcal/mol |
2.00067 kcal/mol |
1.16388 kcal/mol |
143 154@LB@ | |@LB@5'-CGG...UGAUU ACAGA...AUC-3'@LB@ UGUGAGCAAU@LB@ ||||||||||@LB@ ACACUCGUUA@LB@3'-UUU...UCGUU CAGCA...GCG-5'@LB@ | |@LB@ 51 40@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -14.8509 kcal/mol@LB@Unfolding Energy - mRNA 2.00067 kcal/mol@LB@Unfolding Energy - sRNA 1.16388 kcal/mol@LB@@LB@Position - mRNA 144 -- 153@LB@Position - sRNA 41 -- 50@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 41 -- 47@LB@ |
107 |
0.0112 |
0.3489 |
b3012 |
dkgA |
-15.28 |
0.024842 |
250 -- 292 |
50 -- 87 |
2 5-diketo-D-gluconate reductase A |
|
_____________249__________________________________________293\n_____________|____________________________________________|\n5'-CUG...GCCCC______G___G___GUC____AAGC________A__________CACCGCCA-3'\n______________AGCUGG_ACU_GGC___UGGC____AAGUAAUG__GGAAGUAAU\n______________|||::|_||:_|||___||||____|||||||:__|||||:|||\n______________UCGGUC_UGG_CCG___ACCG____UUCAUUAU__CCUUCGUUA\n________3'-UUU______G___G__________A___________GA_________CACUC...GCG-5'\n_____________|____________________________________________|\n_____________88___________________________________________49\n |
286 -- 292 |
50 -- 56 |
-41.0731 kcal/mol |
11.2031 kcal/mol |
14.5934 kcal/mol |
249 293@LB@ | |@LB@5'-CUG...GCCCC G G GUC AAGC A CACCGCCA-3'@LB@ AGCUGG ACU GGC UGGC AAGUAAUG GGAAGUAAU@LB@ |||::| ||: ||| |||| |||||||: |||||:|||@LB@ UCGGUC UGG CCG ACCG UUCAUUAU CCUUCGUUA@LB@ 3'-UUU G G A GA CACUC...GCG-5'@LB@ | |@LB@ 88 49@LB@@LB@@LB@Energy -15.28 kcal/mol@LB@Hybridization Energy -41.0731 kcal/mol@LB@Unfolding Energy - mRNA 11.2031 kcal/mol@LB@Unfolding Energy - sRNA 14.5934 kcal/mol@LB@@LB@Position - mRNA 250 -- 292@LB@Position - sRNA 50 -- 87@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 50 -- 56@LB@ |
108 |
0.01121 |
0.3489 |
b4195 |
ulaC |
-11.73 |
0.099158 |
148 -- 168 |
44 -- 62 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________147___________________169\n_____________|_____________________|\n5'-GCG...GAAAC_____________CAAA____AUUUC...UGG-3'\n______________UGCUGGAAGUGAU____GAGC\n______________|:|||||||::||____||||\n______________AUGACCUUCGUUA____CUCG\n3'-UUU...UCAUU_____________CA______UUACA...GCG-5'\n_____________|_____________________|\n_____________63____________________43\n |
152 -- 158 |
52 -- 58 |
-21.7326 kcal/mol |
6.70621 kcal/mol |
3.30069 kcal/mol |
147 169@LB@ | |@LB@5'-GCG...GAAAC CAAA AUUUC...UGG-3'@LB@ UGCUGGAAGUGAU GAGC@LB@ |:|||||||::|| ||||@LB@ AUGACCUUCGUUA CUCG@LB@3'-UUU...UCAUU CA UUACA...GCG-5'@LB@ | |@LB@ 63 43@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -21.7326 kcal/mol@LB@Unfolding Energy - mRNA 6.70621 kcal/mol@LB@Unfolding Energy - sRNA 3.30069 kcal/mol@LB@@LB@Position - mRNA 148 -- 168@LB@Position - sRNA 44 -- 62@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |
109 |
0.01153 |
0.3513 |
b0826 |
moeB |
-14.46 |
0.034286 |
118 -- 145 |
37 -- 63 |
molybdopterin synthase sulfurylase |
|
_____________117__________________________146\n_____________|____________________________|\n5'-CUU...UUAUC_________C_____CGC________G_AAGUG...GCG-3'\n______________GUGCUGGAA_GCGAU___GGCAAUGU_G\n______________:|:||||||_||:||___:|||||||_|\n______________UAUGACCUU_CGUUA___UCGUUACA_C\n3'-UUU...UUCAU_______________CAC________G_ACGAA...GCG-5'\n_____________|____________________________|\n_____________64___________________________36\n |
137 -- 143 |
39 -- 45 |
-30.0553 kcal/mol |
12.2918 kcal/mol |
3.30267 kcal/mol |
117 146@LB@ | |@LB@5'-CUU...UUAUC C CGC G AAGUG...GCG-3'@LB@ GUGCUGGAA GCGAU GGCAAUGU G@LB@ :|:|||||| ||:|| :||||||| |@LB@ UAUGACCUU CGUUA UCGUUACA C@LB@3'-UUU...UUCAU CAC G ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -30.0553 kcal/mol@LB@Unfolding Energy - mRNA 12.2918 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 118 -- 145@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 39 -- 45@LB@ |
110 |
0.01171 |
0.3513 |
b0613 |
citG |
-15.71 |
0.020947 |
180 -- 206 |
37 -- 61 |
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase |
|
_____________179_________________________207\n_____________|___________________________|\n5'-UGA...CAACC__A________C__C___A________AUGCC...UCA-3'\n______________GC_UGGAGGCA_UG_UGA_CGAUGUCG\n______________:|_||||:|||_||_|||_|:||||||\n______________UG_ACCUUCGU_AC_ACU_GUUACAGC\n3'-UUU...CAUUA___________U______C________ACGAA...GCG-5'\n_____________|___________________________|\n_____________62__________________________36\n |
200 -- 206 |
37 -- 43 |
-28.5741 kcal/mol |
9.5654 kcal/mol |
3.30158 kcal/mol |
179 207@LB@ | |@LB@5'-UGA...CAACC A C C A AUGCC...UCA-3'@LB@ GC UGGAGGCA UG UGA CGAUGUCG@LB@ :| ||||:||| || ||| |:||||||@LB@ UG ACCUUCGU AC ACU GUUACAGC@LB@3'-UUU...CAUUA U C ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -15.71 kcal/mol@LB@Hybridization Energy -28.5741 kcal/mol@LB@Unfolding Energy - mRNA 9.5654 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 180 -- 206@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 37 -- 43@LB@ |
111 |
0.01184 |
0.3513 |
b0528 |
ybcJ |
-13.49 |
0.050278 |
257 -- 272 |
44 -- 61 |
ribosome-associated protein; putative RNA-binding protein |
|
_____________256________________273\n_____________|__________________|\n5'-AGG...CUGAA________GC________GAAAG...CGA-3'\n______________ACUGGAAG___UG_GAGC\n______________||||||||___||_||||\n______________UGACCUUC___AC_CUCG\n3'-UUU...CAUUA________GUU__A____UUACA...GCG-5'\n_____________|__________________|\n_____________62_________________43\n |
258 -- 264 |
54 -- 60 |
-19.8617 kcal/mol |
3.07726 kcal/mol |
3.29941 kcal/mol |
256 273@LB@ | |@LB@5'-AGG...CUGAA GC GAAAG...CGA-3'@LB@ ACUGGAAG UG GAGC@LB@ |||||||| || ||||@LB@ UGACCUUC AC CUCG@LB@3'-UUU...CAUUA GUU A UUACA...GCG-5'@LB@ | |@LB@ 62 43@LB@@LB@@LB@Energy -13.49 kcal/mol@LB@Hybridization Energy -19.8617 kcal/mol@LB@Unfolding Energy - mRNA 3.07726 kcal/mol@LB@Unfolding Energy - sRNA 3.29941 kcal/mol@LB@@LB@Position - mRNA 257 -- 272@LB@Position - sRNA 44 -- 61@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 54 -- 60@LB@ |
112 |
0.01186 |
0.3513 |
b2021 |
hisC |
-13.06 |
0.059267 |
35 -- 113 |
9 -- 85 |
histidinol-phosphate aminotransferase |
|
_____________34___________________________________________________________________________________114\n_____________|____________________________________________________________________________________|\n5'-GUU...CUGUU_____C__G___________AUUUCCA_______C___ACC_UAC__G__C_____AAAGAG_____________CU_______AACCA...GGC-3'\n______________CCAGC_UC_GGCUGGC__AG________GAAGCG_AUG___G___AG_AA_UGUCG_______GGGUUCUCCGCG__GG_CUUC\n______________|||||_:|_|||||||__||________|||||:_|||___|___||_||_|||||_______:|||||||||||__||_||||\n______________GGUCG_GG_CCGACCG__UC________CUUCGU_UAC___C___UC_UU_ACAGC_______UCCAAGAGGCGC__CC_GAAG\n______3'-UUUUC_____U__G_______AU__AUUAUGAC__________A________G________ACGAAAG____________UC__A____GACUAGCG-5'\n_____________|____________________________________________________________________________________|\n_____________86___________________________________________________________________________________8\n |
99 -- 105 |
18 -- 24 |
-69.7784 kcal/mol |
31.0124 kcal/mol |
25.703 kcal/mol |
34 114@LB@ | |@LB@5'-GUU...CUGUU C G AUUUCCA C ACC UAC G C AAAGAG CU AACCA...GGC-3'@LB@ CCAGC UC GGCUGGC AG GAAGCG AUG G AG AA UGUCG GGGUUCUCCGCG GG CUUC@LB@ ||||| :| ||||||| || |||||: ||| | || || ||||| :||||||||||| || ||||@LB@ GGUCG GG CCGACCG UC CUUCGU UAC C UC UU ACAGC UCCAAGAGGCGC CC GAAG@LB@ 3'-UUUUC U G AU AUUAUGAC A G ACGAAAG UC A GACUAGCG-5'@LB@ | |@LB@ 86 8@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -69.7784 kcal/mol@LB@Unfolding Energy - mRNA 31.0124 kcal/mol@LB@Unfolding Energy - sRNA 25.703 kcal/mol@LB@@LB@Position - mRNA 35 -- 113@LB@Position - sRNA 9 -- 85@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 18 -- 24@LB@ |
113 |
0.01187 |
0.3513 |
b2901 |
bglA |
-10.39 |
0.163088 |
124 -- 152 |
36 -- 60 |
6-phospho-beta-glucosidase A |
|
_____________123___________________________153\n_____________|_____________________________|\n5'-UUC...UCAUC______A__U__AAAAAA___________UUGGC...GGC-3'\n______________CUGGAA_CG_UG______AGUGAUGUCGU\n______________||||||_|:_||______||::|||||||\n______________GACCUU_GU_AC______UCGUUACAGCA\n3'-UUU...AUUAU______C__U__AC_______________CGAAA...GCG-5'\n_____________|_____________________________|\n_____________61____________________________35\n |
146 -- 152 |
36 -- 42 |
-20.7652 kcal/mol |
7.06987 kcal/mol |
3.30077 kcal/mol |
123 153@LB@ | |@LB@5'-UUC...UCAUC A U AAAAAA UUGGC...GGC-3'@LB@ CUGGAA CG UG AGUGAUGUCGU@LB@ |||||| |: || ||::|||||||@LB@ GACCUU GU AC UCGUUACAGCA@LB@3'-UUU...AUUAU C U AC CGAAA...GCG-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -10.39 kcal/mol@LB@Hybridization Energy -20.7652 kcal/mol@LB@Unfolding Energy - mRNA 7.06987 kcal/mol@LB@Unfolding Energy - sRNA 3.30077 kcal/mol@LB@@LB@Position - mRNA 124 -- 152@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 36 -- 42@LB@ |
114 |
0.01202 |
0.3513 |
b4348 |
hsdS |
-14.85 |
0.029459 |
128 -- 148 |
40 -- 66 |
specificity determinant for hsdM and hsdR |
|
_____________127_________________________149\n_____________|___________________________|\n5'-CUG...GAUGC___________________________AGGCC...UAA-3'\n______________GUGA_ACUGGGGGC_____GAGCGAUG\n______________||:|_|||||::||_____||||:|||\n______________CAUU_UGACCUUCG_____CUCGUUAC\n3'-UUU...CGAUU____A_________UUACA________AGCAC...GCG-5'\n_____________|___________________________|\n_____________67__________________________39\n |
142 -- 148 |
40 -- 46 |
-25.5951 kcal/mol |
7.44461 kcal/mol |
3.30497 kcal/mol |
127 149@LB@ | |@LB@5'-CUG...GAUGC AGGCC...UAA-3'@LB@ GUGA ACUGGGGGC GAGCGAUG@LB@ ||:| |||||::|| ||||:|||@LB@ CAUU UGACCUUCG CUCGUUAC@LB@3'-UUU...CGAUU A UUACA AGCAC...GCG-5'@LB@ | |@LB@ 67 39@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -25.5951 kcal/mol@LB@Unfolding Energy - mRNA 7.44461 kcal/mol@LB@Unfolding Energy - sRNA 3.30497 kcal/mol@LB@@LB@Position - mRNA 128 -- 148@LB@Position - sRNA 40 -- 66@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 40 -- 46@LB@ |
115 |
0.01202 |
0.3513 |
b1881 |
cheZ |
-13.42 |
0.051545 |
178 -- 197 |
37 -- 61 |
chemotaxis regulator protein phosphatase for CheY |
|
_____________177_______________________198\n_____________|_________________________|\n5'-AUU...GAGAA_________________________ACUAU...GGG-3'\n______________ACUGG__GC_AUGUGAG_GAUG_CG\n______________|||||__||_|||||||_:|||_||\n______________UGACC__CG_UACACUC_UUAC_GC\n3'-UUU...CAUUA_____UU__U_______G____A__ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
185 -- 191 |
45 -- 51 |
-22.2356 kcal/mol |
5.51256 kcal/mol |
3.30158 kcal/mol |
177 198@LB@ | |@LB@5'-AUU...GAGAA ACUAU...GGG-3'@LB@ ACUGG GC AUGUGAG GAUG CG@LB@ ||||| || ||||||| :||| ||@LB@ UGACC CG UACACUC UUAC GC@LB@3'-UUU...CAUUA UU U G A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -22.2356 kcal/mol@LB@Unfolding Energy - mRNA 5.51256 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 178 -- 197@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 45 -- 51@LB@ |
116 |
0.01242 |
0.3585 |
b0468 |
ybaN |
-14.97 |
0.028033 |
230 -- 260 |
44 -- 78 |
DUF454 family inner membrane protein |
|
_____________229___________________________________261\n_____________|_____________________________________|\n5'-GUC...AUUGG_______________________UAC___________GUGGU...UGC-3'\n______________CUGGCUGGC__GGUAGUGCUGGG___GC____UGGGC\n______________|:|||||||__:|||:|:||||:___||____||:||\n______________GGCCGACCG__UCAUUAUGACCU___CG____ACUCG\n3'-UUU...UCGUG_________AU____________U____UUAC_____UUACA...GCG-5'\n_____________|_____________________________________|\n_____________79____________________________________43\n |
244 -- 250 |
56 -- 62 |
-40.2392 kcal/mol |
12.5705 kcal/mol |
12.6976 kcal/mol |
229 261@LB@ | |@LB@5'-GUC...AUUGG UAC GUGGU...UGC-3'@LB@ CUGGCUGGC GGUAGUGCUGGG GC UGGGC@LB@ |:||||||| :|||:|:||||: || ||:||@LB@ GGCCGACCG UCAUUAUGACCU CG ACUCG@LB@3'-UUU...UCGUG AU U UUAC UUACA...GCG-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -40.2392 kcal/mol@LB@Unfolding Energy - mRNA 12.5705 kcal/mol@LB@Unfolding Energy - sRNA 12.6976 kcal/mol@LB@@LB@Position - mRNA 230 -- 260@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 56 -- 62@LB@ |
117 |
0.0126 |
0.3585 |
b2200 |
ccmB |
-15.87 |
0.019639 |
270 -- 292 |
1 -- 22 |
heme export ABC transporter permease |
|
_____________269_____________________293\n_____________|_______________________|\n5'-CGU...CCAAC____U_U__U_____________AAUUACCC-3'\n______________CCGC_G_GG_UCUUCCUGAUUGU\n______________||||_|_||_||||||||||:|:\n______________GGCG_C_CC_AGAAGGACUAGCG\n3'-UUU...CAAGA______U__C_____________-5'\n_____________|______________________|\n_____________23_____________________1\n |
286 -- 292 |
1 -- 7 |
-31.2771 kcal/mol |
7.85543 kcal/mol |
7.55214 kcal/mol |
269 293@LB@ | |@LB@5'-CGU...CCAAC U U U AAUUACCC-3'@LB@ CCGC G GG UCUUCCUGAUUGU@LB@ |||| | || ||||||||||:|:@LB@ GGCG C CC AGAAGGACUAGCG@LB@3'-UUU...CAAGA U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -31.2771 kcal/mol@LB@Unfolding Energy - mRNA 7.85543 kcal/mol@LB@Unfolding Energy - sRNA 7.55214 kcal/mol@LB@@LB@Position - mRNA 270 -- 292@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |
118 |
0.01263 |
0.3585 |
b0890 |
ftsK |
-8.12 |
0.357469 |
20 -- 46 |
38 -- 59 |
DNA translocase at septal ring sorting daughter chromsomes |
|
_____________19__________________________47\n_____________|___________________________|\n5'-ACA...UGUUA______AAGU___GCA_______C___UGGUU...UUG-3'\n______________UGGAAG____CAA___GAGUAAU_GUC\n______________||||||____|||___|||:|||_|||\n______________ACCUUC____GUU___CUCGUUA_CAG\n3'-UUU...UUAUG_____________ACA___________CACGA...GCG-5'\n_____________|___________________________|\n_____________60__________________________37\n |
36 -- 42 |
41 -- 47 |
-18.6025 kcal/mol |
7.19996 kcal/mol |
3.27871 kcal/mol |
19 47@LB@ | |@LB@5'-ACA...UGUUA AAGU GCA C UGGUU...UUG-3'@LB@ UGGAAG CAA GAGUAAU GUC@LB@ |||||| ||| |||:||| |||@LB@ ACCUUC GUU CUCGUUA CAG@LB@3'-UUU...UUAUG ACA CACGA...GCG-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -18.6025 kcal/mol@LB@Unfolding Energy - mRNA 7.19996 kcal/mol@LB@Unfolding Energy - sRNA 3.27871 kcal/mol@LB@@LB@Position - mRNA 20 -- 46@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
119 |
0.01272 |
0.3585 |
b4336 |
yjiN |
-16.20 |
0.017192 |
123 -- 159 |
40 -- 86 |
zinc-type alcohol dehydrogenase-like protein |
|
_____________122_____________________________________________160\n_____________|_______________________________________________|\n5'-GGU...CGUGC_________A___A___C___C____G____________________AUUUU...CCA-3'\n______________GCCAGCAUC_GGC__GC_GAG___UA_UGGAG_______GAGCAGUG\n______________|||||||:|_|||__||_:||___||_||||:_______|||||:||\n______________CGGUCGUGG_CCG__CG_UUC___AU_ACCUU_______CUCGUUAC\n_______3'-UUUU_________G___AC__A___AUU__G_____CGUUACA________AGCAC...GCG-5'\n_____________|_______________________________________________|\n_____________87______________________________________________39\n |
153 -- 159 |
40 -- 46 |
-42.8122 kcal/mol |
11.6972 kcal/mol |
14.9104 kcal/mol |
122 160@LB@ | |@LB@5'-GGU...CGUGC A A C C G AUUUU...CCA-3'@LB@ GCCAGCAUC GGC GC GAG UA UGGAG GAGCAGUG@LB@ |||||||:| ||| || :|| || ||||: |||||:||@LB@ CGGUCGUGG CCG CG UUC AU ACCUU CUCGUUAC@LB@ 3'-UUUU G AC A AUU G CGUUACA AGCAC...GCG-5'@LB@ | |@LB@ 87 39@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -42.8122 kcal/mol@LB@Unfolding Energy - mRNA 11.6972 kcal/mol@LB@Unfolding Energy - sRNA 14.9104 kcal/mol@LB@@LB@Position - mRNA 123 -- 159@LB@Position - sRNA 40 -- 86@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 40 -- 46@LB@ |
120 |
0.0128 |
0.3585 |
b0445 |
ybaE |
-11.02 |
0.129416 |
154 -- 176 |
41 -- 63 |
putative ABC transporter periplasmic binding protein |
|
_____________153______________________177\n_____________|________________________|\n5'-CGU...GAUAU______________A____A____UAAAU...GUU-3'\n______________AUAC_GGAAGUAAU_GUGA_UAGU\n______________||||_|||||:|||_||||_:|:|\n______________UAUG_CCUUCGUUA_CACU_GUUA\n3'-UUU...UUCAU____A______________C____CAGCA...GCG-5'\n_____________|________________________|\n_____________64_______________________40\n |
159 -- 165 |
51 -- 57 |
-19.1991 kcal/mol |
4.87781 kcal/mol |
3.30177 kcal/mol |
153 177@LB@ | |@LB@5'-CGU...GAUAU A A UAAAU...GUU-3'@LB@ AUAC GGAAGUAAU GUGA UAGU@LB@ |||| |||||:||| |||| :|:|@LB@ UAUG CCUUCGUUA CACU GUUA@LB@3'-UUU...UUCAU A C CAGCA...GCG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -19.1991 kcal/mol@LB@Unfolding Energy - mRNA 4.87781 kcal/mol@LB@Unfolding Energy - sRNA 3.30177 kcal/mol@LB@@LB@Position - mRNA 154 -- 176@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
121 |
0.01302 |
0.3615 |
b0966 |
hspQ |
-14.11 |
0.039362 |
113 -- 134 |
1 -- 23 |
heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein |
|
_____________112_____________________135\n_____________|_______________________|\n5'-AGA...CUAUA____AA_______G_________GUCAU...CUG-3'\n______________UCUG__AGGGUUU_CCUG_UCGC\n______________||:|__|||||:|_||||_||||\n______________AGGC__UCCCAGA_GGAC_AGCG\n3'-UUU...CCAAG____GC_______A____U____-5'\n_____________|______________________|\n_____________24_____________________1\n |
119 -- 125 |
11 -- 17 |
-28.2829 kcal/mol |
6.57487 kcal/mol |
7.59819 kcal/mol |
112 135@LB@ | |@LB@5'-AGA...CUAUA AA G GUCAU...CUG-3'@LB@ UCUG AGGGUUU CCUG UCGC@LB@ ||:| |||||:| |||| ||||@LB@ AGGC UCCCAGA GGAC AGCG@LB@3'-UUU...CCAAG GC A U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.11 kcal/mol@LB@Hybridization Energy -28.2829 kcal/mol@LB@Unfolding Energy - mRNA 6.57487 kcal/mol@LB@Unfolding Energy - sRNA 7.59819 kcal/mol@LB@@LB@Position - mRNA 113 -- 134@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 11 -- 17@LB@ |
122 |
0.01331 |
0.3627 |
b0078 |
ilvH |
-10.99 |
0.130728 |
66 -- 84 |
41 -- 61 |
acetolactate synthase 3 small subunit valine-sensitive |
|
_____________65____________________85\n_____________|_____________________|\n5'-GCC...GAGGC_______________C_____AAUCG...UGA-3'\n______________GCUGGAA_CAG_GUG_GCAAU\n______________:||||||_||:_|||_|||||\n______________UGACCUU_GUU_CAC_CGUUA\n3'-UUU...CAUUA_______C___A___U_____CAGCA...GCG-5'\n_____________|_____________________|\n_____________62____________________40\n |
66 -- 72 |
55 -- 61 |
-20.2432 kcal/mol |
5.95009 kcal/mol |
3.30062 kcal/mol |
65 85@LB@ | |@LB@5'-GCC...GAGGC C AAUCG...UGA-3'@LB@ GCUGGAA CAG GUG GCAAU@LB@ :|||||| ||: ||| |||||@LB@ UGACCUU GUU CAC CGUUA@LB@3'-UUU...CAUUA C A U CAGCA...GCG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -20.2432 kcal/mol@LB@Unfolding Energy - mRNA 5.95009 kcal/mol@LB@Unfolding Energy - sRNA 3.30062 kcal/mol@LB@@LB@Position - mRNA 66 -- 84@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 55 -- 61@LB@ |
123 |
0.0134 |
0.3627 |
b3774 |
ilvC |
-11.90 |
0.092739 |
9 -- 41 |
1 -- 25 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________8__________________________________42\n_____________|__________________________________|\n___5'-AUGGCGGC_______CAGAUGCAG__A_______A_______GUAAA...GCU-3'\n______________UUUCCGC_________GA_GGUUUUC__GAUCGC\n______________|:|||||_________||_|||:|||__||||||\n______________AGAGGCG_________CU_CCAGAAG__CUAGCG\n3'-UUU...GUCCA__________________C_______GA______-5'\n_____________|_________________________________|\n_____________26________________________________1\n |
28 -- 34 |
9 -- 15 |
-28.1375 kcal/mol |
8.51703 kcal/mol |
7.71912 kcal/mol |
8 42@LB@ | |@LB@ 5'-AUGGCGGC CAGAUGCAG A A GUAAA...GCU-3'@LB@ UUUCCGC GA GGUUUUC GAUCGC@LB@ |:||||| || |||:||| ||||||@LB@ AGAGGCG CU CCAGAAG CUAGCG@LB@3'-UUU...GUCCA C GA -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -28.1375 kcal/mol@LB@Unfolding Energy - mRNA 8.51703 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 9 -- 41@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 9 -- 15@LB@ |
124 |
0.01356 |
0.3627 |
b2232 |
ubiG |
-16.56 |
0.014945 |
261 -- 300 |
44 -- 89 |
bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase |
|
_____________260_____________________________________________300\n_____________|_______________________________________________|\n5'-CUU...AAUUU_______U_____CCC______GG________________________-3'\n______________GAAGCCG_CGCCU___GCUGGU_____GAU_CUGGAAG____GUGAGU\n______________:|||||:_|:||:___|||||:_____:||_|||||||____|||||:\n______________UUUCGGU_GUGGG___CGACCG_____UUA_GACCUUC____CACUCG\n__________3'-U_______C_____C________AUUCA___U_______GUUA______UUACA...GCG-5'\n_____________|________________________________________________|\n_____________90_______________________________________________43\n |
288 -- 294 |
54 -- 60 |
-44.5757 kcal/mol |
13.1093 kcal/mol |
14.9095 kcal/mol |
260 300@LB@ | |@LB@5'-CUU...AAUUU U CCC GG -3'@LB@ GAAGCCG CGCCU GCUGGU GAU CUGGAAG GUGAGU@LB@ :|||||: |:||: |||||: :|| ||||||| |||||:@LB@ UUUCGGU GUGGG CGACCG UUA GACCUUC CACUCG@LB@ 3'-U C C AUUCA U GUUA UUACA...GCG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -44.5757 kcal/mol@LB@Unfolding Energy - mRNA 13.1093 kcal/mol@LB@Unfolding Energy - sRNA 14.9095 kcal/mol@LB@@LB@Position - mRNA 261 -- 300@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 54 -- 60@LB@ |
125 |
0.0136 |
0.3627 |
b3647 |
ligB |
-15.20 |
0.025592 |
210 -- 279 |
1 -- 59 |
DNA ligase NAD(+)-dependent |
|
_____________209_____________________________________________________________________280\n_____________|_______________________________________________________________________|\n5'-GGC...AAGUA____U______AUUAAUA____UC________GG__AUCA___G______C_____GUCCGG_________CAGCC...AAA-3'\n______________UGGA_GGCGAU_______GGUA___UUGUGCU__CA____UCU_UGUGGG_GGUCU______CCUGGUCGC\n______________||||_:||:||_______:|:|___|:|||||__||____|||_:|:|:|_|||||______||||:||||\n______________ACCU_UCGUUA_______UCGU___AGCACGA__GU____AGA_GCGCUC_CCAGA______GGACUAGCG\n3'-UUU...UUAUG___________CAC________UAC_______AA__CCA____G____________A______________-5'\n_____________|______________________________________________________________________|\n_____________60_____________________________________________________________________1\n |
273 -- 279 |
1 -- 7 |
-52.2567 kcal/mol |
22.9457 kcal/mol |
14.1095 kcal/mol |
209 280@LB@ | |@LB@5'-GGC...AAGUA U AUUAAUA UC GG AUCA G C GUCCGG CAGCC...AAA-3'@LB@ UGGA GGCGAU GGUA UUGUGCU CA UCU UGUGGG GGUCU CCUGGUCGC@LB@ |||| :||:|| :|:| |:||||| || ||| :|:|:| ||||| ||||:||||@LB@ ACCU UCGUUA UCGU AGCACGA GU AGA GCGCUC CCAGA GGACUAGCG@LB@3'-UUU...UUAUG CAC UAC AA CCA G A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -15.20 kcal/mol@LB@Hybridization Energy -52.2567 kcal/mol@LB@Unfolding Energy - mRNA 22.9457 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 210 -- 279@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 1 -- 7@LB@ |
126 |
0.01361 |
0.3627 |
b2135 |
yohC |
-14.18 |
0.038247 |
192 -- 212 |
38 -- 58 |
Yip1 family inner membrane protein |
|
_____________191___________________213\n_____________|_____________________|\n5'-CAU...AACAA_________A_____C_____UGGGG...UUU-3'\n______________GGGGGCGGU_UGAGC_AUGUC\n______________||::||::|_|||||_|||||\n______________CCUUCGUUA_ACUCG_UACAG\n3'-UUU...UAUGA_________C_____U_____CACGA...GCG-5'\n_____________|_____________________|\n_____________59____________________37\n |
192 -- 198 |
52 -- 58 |
-26.6444 kcal/mol |
9.24504 kcal/mol |
3.21639 kcal/mol |
191 213@LB@ | |@LB@5'-CAU...AACAA A C UGGGG...UUU-3'@LB@ GGGGGCGGU UGAGC AUGUC@LB@ ||::||::| ||||| |||||@LB@ CCUUCGUUA ACUCG UACAG@LB@3'-UUU...UAUGA C U CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.18 kcal/mol@LB@Hybridization Energy -26.6444 kcal/mol@LB@Unfolding Energy - mRNA 9.24504 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 192 -- 212@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
127 |
0.01387 |
0.3627 |
b1224 |
narG |
-12.01 |
0.089072 |
151 -- 160 |
37 -- 46 |
nitrate reductase 1 alpha subunit |
|
_____________150________161\n_____________|__________|\n5'-UAA...ACAUU__________AUUUA...AGG-3'\n______________AGCAAUGUCG\n______________||||||||||\n______________UCGUUACAGC\n3'-UUU...UACAC__________ACGAA...GCG-5'\n_____________|__________|\n_____________47_________36\n |
154 -- 160 |
37 -- 43 |
-14.8133 kcal/mol |
1.65076 kcal/mol |
1.15554 kcal/mol |
150 161@LB@ | |@LB@5'-UAA...ACAUU AUUUA...AGG-3'@LB@ AGCAAUGUCG@LB@ ||||||||||@LB@ UCGUUACAGC@LB@3'-UUU...UACAC ACGAA...GCG-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -14.8133 kcal/mol@LB@Unfolding Energy - mRNA 1.65076 kcal/mol@LB@Unfolding Energy - sRNA 1.15554 kcal/mol@LB@@LB@Position - mRNA 151 -- 160@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 37 -- 43@LB@ |
128 |
0.01397 |
0.3627 |
b1656 |
sodB |
-9.64 |
0.214388 |
197 -- 205 |
38 -- 46 |
superoxide dismutase Fe |
|
_____________196_______206\n_____________|_________|\n5'-UCU...AGAGU_________AUUCG...AGA-3'\n______________AGCAAUGUC\n______________|||||||||\n______________UCGUUACAG\n3'-UUU...UACAC_________CACGA...GCG-5'\n_____________|_________|\n_____________47________37\n |
199 -- 205 |
38 -- 44 |
-13.5738 kcal/mol |
2.78264 kcal/mol |
1.15511 kcal/mol |
196 206@LB@ | |@LB@5'-UCU...AGAGU AUUCG...AGA-3'@LB@ AGCAAUGUC@LB@ |||||||||@LB@ UCGUUACAG@LB@3'-UUU...UACAC CACGA...GCG-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -9.64 kcal/mol@LB@Hybridization Energy -13.5738 kcal/mol@LB@Unfolding Energy - mRNA 2.78264 kcal/mol@LB@Unfolding Energy - sRNA 1.15511 kcal/mol@LB@@LB@Position - mRNA 197 -- 205@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
129 |
0.01401 |
0.3627 |
b0696 |
kdpC |
-11.63 |
0.102829 |
282 -- 295 |
49 -- 63 |
potassium translocating ATPase subunit C |
|
_____________281_____________296\n_____________|_______________|\n5'-GCG...CCACC_______________GUGGU-3'\n______________GUACUGG_GGCAAUG\n______________:||||||_:||||||\n______________UAUGACC_UCGUUAC\n3'-UUU...UUCAU_______U_______ACUCG...GCG-5'\n_____________|_______________|\n_____________64______________48\n |
289 -- 295 |
49 -- 55 |
-18.0603 kcal/mol |
3.42021 kcal/mol |
3.01015 kcal/mol |
281 296@LB@ | |@LB@5'-GCG...CCACC GUGGU-3'@LB@ GUACUGG GGCAAUG@LB@ :|||||| :||||||@LB@ UAUGACC UCGUUAC@LB@3'-UUU...UUCAU U ACUCG...GCG-5'@LB@ | |@LB@ 64 48@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -18.0603 kcal/mol@LB@Unfolding Energy - mRNA 3.42021 kcal/mol@LB@Unfolding Energy - sRNA 3.01015 kcal/mol@LB@@LB@Position - mRNA 282 -- 295@LB@Position - sRNA 49 -- 63@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 49 -- 55@LB@ |
130 |
0.01403 |
0.3627 |
b3531 |
bcsZ |
-10.44 |
0.160598 |
268 -- 291 |
50 -- 82 |
endo-1 4-D-glucanase |
|
_____________267_______________________________292\n_____________|_________________________________|\n5'-UCA...AGCCU_________CU______________________UUAAA...AGG-3'\n______________GUACCUGGC__GC_________CUGGGAGCAGU\n______________|:|||:|||__||_________||||:||||:|\n______________CGUGGGCCG__CG_________GACCUUCGUUA\n___3'-UUUUCGGU_________AC__AUUCAUUAU___________CACUC...GCG-5'\n_____________|_________________________________|\n_____________83________________________________49\n |
283 -- 289 |
52 -- 58 |
-33.5305 kcal/mol |
8.70748 kcal/mol |
14.3864 kcal/mol |
267 292@LB@ | |@LB@5'-UCA...AGCCU CU UUAAA...AGG-3'@LB@ GUACCUGGC GC CUGGGAGCAGU@LB@ |:|||:||| || ||||:||||:|@LB@ CGUGGGCCG CG GACCUUCGUUA@LB@ 3'-UUUUCGGU AC AUUCAUUAU CACUC...GCG-5'@LB@ | |@LB@ 83 49@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -33.5305 kcal/mol@LB@Unfolding Energy - mRNA 8.70748 kcal/mol@LB@Unfolding Energy - sRNA 14.3864 kcal/mol@LB@@LB@Position - mRNA 268 -- 291@LB@Position - sRNA 50 -- 82@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 52 -- 58@LB@ |
131 |
0.01424 |
0.3651 |
b0058 |
rluA |
-14.42 |
0.034831 |
43 -- 63 |
40 -- 60 |
dual specificity 23S rRNA pseudouridine(746) tRNA pseudouridine(32) synthase SAM-dependent |
|
_____________42____________________64\n_____________|_____________________|\n5'-CGU...CUCGU________UC__C_U______AACCC...UGU-3'\n______________CUGGAAGC__UG_G_GCAGUG\n______________||||||||__||_|_|||:||\n______________GACCUUCG__AC_C_CGUUAC\n3'-UUU...AUUAU________UU__A_U______AGCAC...GCG-5'\n_____________|_____________________|\n_____________61____________________39\n |
44 -- 50 |
53 -- 59 |
-25.1761 kcal/mol |
7.45543 kcal/mol |
3.29985 kcal/mol |
42 64@LB@ | |@LB@5'-CGU...CUCGU UC C U AACCC...UGU-3'@LB@ CUGGAAGC UG G GCAGUG@LB@ |||||||| || | |||:||@LB@ GACCUUCG AC C CGUUAC@LB@3'-UUU...AUUAU UU A U AGCAC...GCG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -14.42 kcal/mol@LB@Hybridization Energy -25.1761 kcal/mol@LB@Unfolding Energy - mRNA 7.45543 kcal/mol@LB@Unfolding Energy - sRNA 3.29985 kcal/mol@LB@@LB@Position - mRNA 43 -- 63@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 53 -- 59@LB@ |
132 |
0.01454 |
0.37 |
b1083 |
flgL |
-7.54 |
0.428067 |
272 -- 293 |
37 -- 57 |
flagellar hook-filament junction protein |
|
_____________271____________________294\n_____________|______________________|\n5'-UUG...UGGAU______CG_C__ACA_______ACGGGUA-3'\n______________GAAGUA__G_GA___GAUGUCG\n______________||||:|__|_||___:||||||\n______________CUUCGU__C_CU___UUACAGC\n3'-UUU...AUGAC______UA_A__CG________ACGAA...GCG-5'\n_____________|______________________|\n_____________58_____________________36\n |
287 -- 293 |
37 -- 43 |
-16.4529 kcal/mol |
5.68525 kcal/mol |
3.2267 kcal/mol |
271 294@LB@ | |@LB@5'-UUG...UGGAU CG C ACA ACGGGUA-3'@LB@ GAAGUA G GA GAUGUCG@LB@ ||||:| | || :||||||@LB@ CUUCGU C CU UUACAGC@LB@3'-UUU...AUGAC UA A CG ACGAA...GCG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -7.54 kcal/mol@LB@Hybridization Energy -16.4529 kcal/mol@LB@Unfolding Energy - mRNA 5.68525 kcal/mol@LB@Unfolding Energy - sRNA 3.2267 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 37 -- 43@LB@ |
133 |
0.0147 |
0.3709 |
b3832 |
rmuC |
-11.93 |
0.091595 |
31 -- 71 |
21 -- 63 |
DNA recombination protein |
|
_____________30________________________________________________72\n_____________|_________________________________________________|\n5'-AAA...AAAUC___G_________________C______CU___GUAA___UC_______UGUCU...AGC-3'\n______________GUG_UGGAAGC______GGCG__GUCGU__GCU____UUC___UUCUCC\n______________:|:_|||||||______:||:__|||||__|||____|||___||||||\n______________UAU_ACCUUCG______UCGU__CAGCA__CGA____AAG___AAGAGG\n3'-UUU...UUCAU___G_______UUACAC____UA_________________UCC______CGCUC...GCG-5'\n_____________|_________________________________________________|\n_____________64________________________________________________20\n |
35 -- 41 |
53 -- 59 |
-30.4211 kcal/mol |
10.4952 kcal/mol |
7.99187 kcal/mol |
30 72@LB@ | |@LB@5'-AAA...AAAUC G C CU GUAA UC UGUCU...AGC-3'@LB@ GUG UGGAAGC GGCG GUCGU GCU UUC UUCUCC@LB@ :|: ||||||| :||: ||||| ||| ||| ||||||@LB@ UAU ACCUUCG UCGU CAGCA CGA AAG AAGAGG@LB@3'-UUU...UUCAU G UUACAC UA UCC CGCUC...GCG-5'@LB@ | |@LB@ 64 20@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -30.4211 kcal/mol@LB@Unfolding Energy - mRNA 10.4952 kcal/mol@LB@Unfolding Energy - sRNA 7.99187 kcal/mol@LB@@LB@Position - mRNA 31 -- 71@LB@Position - sRNA 21 -- 63@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 53 -- 59@LB@ |
134 |
0.01479 |
0.3709 |
b1930 |
yedF |
-8.51 |
0.315187 |
12 -- 23 |
55 -- 66 |
putative TusA family sulfurtransferase |
|
_____________11___________24\n_____________|____________|\n5'-ACG...CUGGC___U________UGAUU...AAG-3'\n______________GUA_UACUGGGA\n______________|||_||||||:|\n______________CAU_AUGACCUU\n3'-UUU...CGAUU___U________CGUUA...GCG-5'\n_____________|____________|\n_____________67___________54\n |
17 -- 23 |
55 -- 61 |
-12.6769 kcal/mol |
2.14533 kcal/mol |
2.01956 kcal/mol |
11 24@LB@ | |@LB@5'-ACG...CUGGC U UGAUU...AAG-3'@LB@ GUA UACUGGGA@LB@ ||| ||||||:|@LB@ CAU AUGACCUU@LB@3'-UUU...CGAUU U CGUUA...GCG-5'@LB@ | |@LB@ 67 54@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -12.6769 kcal/mol@LB@Unfolding Energy - mRNA 2.14533 kcal/mol@LB@Unfolding Energy - sRNA 2.01956 kcal/mol@LB@@LB@Position - mRNA 12 -- 23@LB@Position - sRNA 55 -- 66@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 55 -- 61@LB@ |
135 |
0.0153 |
0.379 |
b1245 |
oppC |
-10.91 |
0.134968 |
184 -- 214 |
42 -- 65 |
oligopeptide ABC transporter permease |
|
_____________183_____________________________215\n_____________|_______________________________|\n5'-GGU...GUUAC___________CUC______A__UUA_____GAAAA...UUA-3'\n______________UGAUACUGGAG___GCGAUG_UG___AGUAA\n______________|:||||||||:___||:|||_||___||:||\n______________AUUAUGACCUU___CGUUAC_AC___UCGUU\n3'-UUU...GAUUC_______________________________ACAGC...GCG-5'\n_____________|_______________________________|\n_____________66______________________________41\n |
188 -- 194 |
55 -- 61 |
-22.5581 kcal/mol |
8.34668 kcal/mol |
3.30456 kcal/mol |
183 215@LB@ | |@LB@5'-GGU...GUUAC CUC A UUA GAAAA...UUA-3'@LB@ UGAUACUGGAG GCGAUG UG AGUAA@LB@ |:||||||||: ||:||| || ||:||@LB@ AUUAUGACCUU CGUUAC AC UCGUU@LB@3'-UUU...GAUUC ACAGC...GCG-5'@LB@ | |@LB@ 66 41@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -22.5581 kcal/mol@LB@Unfolding Energy - mRNA 8.34668 kcal/mol@LB@Unfolding Energy - sRNA 3.30456 kcal/mol@LB@@LB@Position - mRNA 184 -- 214@LB@Position - sRNA 42 -- 65@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 55 -- 61@LB@ |
136 |
0.01542 |
0.379 |
b0428 |
cyoE |
-15.83 |
0.019915 |
1 -- 35 |
23 -- 58 |
protoheme IX farnesyltransferase |
|
______________1____________________________________36\n______________|____________________________________|\n___________5'-_________CCU_______GCA___G_A_________GGUGC...GCA-3'\n______________GGAA_CAAU___GGCAAUG___GUG_U__CAGGUUCU\n______________||||_||||___:||||||___|||_|__||||||||\n______________CCUU_GUUA___UCGUUAC___CAC_A__GUCCAAGA\n3'-UUU...UAUGA____C____CAC_______AG____G_AA________GGCGC...GCG-5'\n_____________|_____________________________________|\n_____________59____________________________________22\n |
29 -- 35 |
23 -- 29 |
-31.8533 kcal/mol |
8.10531 kcal/mol |
7.91355 kcal/mol |
1 36@LB@ | |@LB@ 5'- CCU GCA G A GGUGC...GCA-3'@LB@ GGAA CAAU GGCAAUG GUG U CAGGUUCU@LB@ |||| |||| :|||||| ||| | ||||||||@LB@ CCUU GUUA UCGUUAC CAC A GUCCAAGA@LB@3'-UUU...UAUGA C CAC AG G AA GGCGC...GCG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -15.83 kcal/mol@LB@Hybridization Energy -31.8533 kcal/mol@LB@Unfolding Energy - mRNA 8.10531 kcal/mol@LB@Unfolding Energy - sRNA 7.91355 kcal/mol@LB@@LB@Position - mRNA 1 -- 35@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 23 -- 29@LB@ |
137 |
0.01545 |
0.379 |
b0881 |
clpS |
-11.92 |
0.091960 |
57 -- 82 |
37 -- 62 |
regulatory protein for ClpA substrate specificity |
|
_____________56_________________________83\n_____________|__________________________|\n5'-GCA...AACGC_____AC__G_______CA_______CUGAU...UCA-3'\n______________UAUUG__AG_AAUGUGA__GAUGUCG\n______________||:||__||_|||||||__:||||||\n______________AUGAC__UC_UUACACU__UUACAGC\n3'-UUU...UCAUU_____CU__G_______CG_______ACGAA...GCG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
76 -- 82 |
37 -- 43 |
-23.3317 kcal/mol |
8.10565 kcal/mol |
3.3026 kcal/mol |
56 83@LB@ | |@LB@5'-GCA...AACGC AC G CA CUGAU...UCA-3'@LB@ UAUUG AG AAUGUGA GAUGUCG@LB@ ||:|| || ||||||| :||||||@LB@ AUGAC UC UUACACU UUACAGC@LB@3'-UUU...UCAUU CU G CG ACGAA...GCG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -23.3317 kcal/mol@LB@Unfolding Energy - mRNA 8.10565 kcal/mol@LB@Unfolding Energy - sRNA 3.3026 kcal/mol@LB@@LB@Position - mRNA 57 -- 82@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 37 -- 43@LB@ |
138 |
0.01576 |
0.3813 |
b3361 |
fic |
-10.85 |
0.137765 |
79 -- 110 |
27 -- 60 |
stationary phase-induced protein putative toxin |
|
_____________78__________________________________111\n_____________|___________________________________|\n5'-CGC...CGUCU________UUC_______UAA____AA________CCAGU...AAC-3'\n______________CUGGGAGC______AGCG___UCGU__UUUUCAGG\n______________||||:|||______|||:___||||__:|||||||\n______________GACCUUCG______UCGU___AGCA__GAAAGUCC\n3'-UUU...AUUAU________UUACAC____UAC____C_________AAGAG...GCG-5'\n_____________|___________________________________|\n_____________61__________________________________26\n |
104 -- 110 |
27 -- 33 |
-28.8548 kcal/mol |
10.0238 kcal/mol |
7.97931 kcal/mol |
78 111@LB@ | |@LB@5'-CGC...CGUCU UUC UAA AA CCAGU...AAC-3'@LB@ CUGGGAGC AGCG UCGU UUUUCAGG@LB@ ||||:||| |||: |||| :|||||||@LB@ GACCUUCG UCGU AGCA GAAAGUCC@LB@3'-UUU...AUUAU UUACAC UAC C AAGAG...GCG-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -28.8548 kcal/mol@LB@Unfolding Energy - mRNA 10.0238 kcal/mol@LB@Unfolding Energy - sRNA 7.97931 kcal/mol@LB@@LB@Position - mRNA 79 -- 110@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 27 -- 33@LB@ |
139 |
0.01578 |
0.3813 |
b3386 |
rpe |
-11.91 |
0.092481 |
276 -- 300 |
34 -- 60 |
D-ribulose-5-phosphate 3-epimerase |
|
_____________275_________________________300\n_____________|___________________________|\n5'-CGC...AAGCC____C_________C__U__________-3'\n______________CUGG_AGC__UG_G_GC_GAUGUCGUGC\n______________||||_|||__||_|_||_:|||||||||\n______________GACC_UCG__AC_C_CG_UUACAGCACG\n3'-UUU...AUUAU____U___UU__A_U_____________AAAGU...GCG-5'\n_____________|____________________________|\n_____________61___________________________33\n |
294 -- 300 |
34 -- 40 |
-27.2321 kcal/mol |
8.55668 kcal/mol |
6.76671 kcal/mol |
275 300@LB@ | |@LB@5'-CGC...AAGCC C C U -3'@LB@ CUGG AGC UG G GC GAUGUCGUGC@LB@ |||| ||| || | || :|||||||||@LB@ GACC UCG AC C CG UUACAGCACG@LB@3'-UUU...AUUAU U UU A U AAAGU...GCG-5'@LB@ | |@LB@ 61 33@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -27.2321 kcal/mol@LB@Unfolding Energy - mRNA 8.55668 kcal/mol@LB@Unfolding Energy - sRNA 6.76671 kcal/mol@LB@@LB@Position - mRNA 276 -- 300@LB@Position - sRNA 34 -- 60@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 34 -- 40@LB@ |
140 |
0.01604 |
0.3851 |
b4022 |
rluF |
-13.68 |
0.046602 |
82 -- 103 |
39 -- 60 |
23S rRNA pseudouridine(2604) synthase |
|
_____________81______________________104\n_____________|_______________________|\n5'-UUA...UGCUU____A_______U__________AACGA...UGU-3'\n______________CUGG_AAGUGAU_UGAGCAG_GU\n______________||||_|||::||_||||||:_||\n______________GACC_UUCGUUA_ACUCGUU_CA\n3'-UUU...AUUAU____________C_______A__GCACG...GCG-5'\n_____________|_______________________|\n_____________61______________________38\n |
95 -- 101 |
42 -- 48 |
-22.0004 kcal/mol |
5.021 kcal/mol |
3.3001 kcal/mol |
81 104@LB@ | |@LB@5'-UUA...UGCUU A U AACGA...UGU-3'@LB@ CUGG AAGUGAU UGAGCAG GU@LB@ |||| |||::|| ||||||: ||@LB@ GACC UUCGUUA ACUCGUU CA@LB@3'-UUU...AUUAU C A GCACG...GCG-5'@LB@ | |@LB@ 61 38@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -22.0004 kcal/mol@LB@Unfolding Energy - mRNA 5.021 kcal/mol@LB@Unfolding Energy - sRNA 3.3001 kcal/mol@LB@@LB@Position - mRNA 82 -- 103@LB@Position - sRNA 39 -- 60@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 42 -- 48@LB@ |
141 |
0.01639 |
0.3906 |
b1585 |
ynfC |
-13.03 |
0.059974 |
17 -- 62 |
43 -- 84 |
UPF0257 family lipoprotein |
|
_____________16______________________________________________63\n_____________|_______________________________________________|\n5'-GCU...GCUCA___G_U______GC_________CC__GG_U_______GG_C_____GAAGC...UCU-3'\n______________CAG_A_CCCGGC__GGC_GAGUA__GC__G_GAGGCGA__G_GAGCA\n______________|||_|_||||||__|||_:||||__:|__|_||:||:|__|_|||||\n______________GUC_U_GGGCCG__CCG_UUCAU__UG__C_CUUCGUU__C_CUCGU\n_____3'-UUUUCG___G________A____A_____UA__A__________A__A_____UACAG...GCG-5'\n_____________|_______________________________________________|\n_____________85______________________________________________42\n |
47 -- 53 |
51 -- 57 |
-45.3683 kcal/mol |
17.4395 kcal/mol |
14.8963 kcal/mol |
16 63@LB@ | |@LB@5'-GCU...GCUCA G U GC CC GG U GG C GAAGC...UCU-3'@LB@ CAG A CCCGGC GGC GAGUA GC G GAGGCGA G GAGCA@LB@ ||| | |||||| ||| :|||| :| | ||:||:| | |||||@LB@ GUC U GGGCCG CCG UUCAU UG C CUUCGUU C CUCGU@LB@ 3'-UUUUCG G A A UA A A A UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -45.3683 kcal/mol@LB@Unfolding Energy - mRNA 17.4395 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 17 -- 62@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 51 -- 57@LB@ |
142 |
0.01677 |
0.3964 |
b3208 |
mtgA |
-9.50 |
0.224857 |
30 -- 43 |
54 -- 67 |
biosynthetic peptidoglycan transglycosylase |
|
_____________29_____________44\n_____________|______________|\n5'-UUG...ACCGC__A___________AGAUG...UGU-3'\n______________AG_AGUGCUGGAAG\n______________||_|:|:|||||||\n______________UC_UUAUGACCUUC\n3'-UUU...CCGAU__A___________GUUAC...GCG-5'\n_____________|______________|\n_____________68_____________53\n |
37 -- 43 |
54 -- 60 |
-16.1342 kcal/mol |
3.92242 kcal/mol |
2.71077 kcal/mol |
29 44@LB@ | |@LB@5'-UUG...ACCGC A AGAUG...UGU-3'@LB@ AG AGUGCUGGAAG@LB@ || |:|:|||||||@LB@ UC UUAUGACCUUC@LB@3'-UUU...CCGAU A GUUAC...GCG-5'@LB@ | |@LB@ 68 53@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -16.1342 kcal/mol@LB@Unfolding Energy - mRNA 3.92242 kcal/mol@LB@Unfolding Energy - sRNA 2.71077 kcal/mol@LB@@LB@Position - mRNA 30 -- 43@LB@Position - sRNA 54 -- 67@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 54 -- 60@LB@ |
143 |
0.01687 |
0.3964 |
b3103 |
yhaH |
-11.09 |
0.125996 |
208 -- 287 |
3 -- 67 |
DUF805 family inner membrane protein |
|
_____________207_________________________________________________________________________________288\n_____________|___________________________________________________________________________________|\n5'-AUU...GGACU____U_____A_____CUAAAAAAUU___________C____G__G_G_____CGCAAAGAGUACU__AU____A________AACAU...UUA-3'\n______________GGUA___CUG_AAGUA__________AUGUCG_GUUU_CGGG_UC_U_CGCGG_____________GG__GUUU_UUCUGGUC\n______________:|||___|||_|||:|__________||||||_|:||_|:||_||_|_||||:_____________||__||:|_|:|||:||\n______________UCAU___GAC_UUCGU__________UACAGC_CGAA_GUCC_AG_A_GCGCU_____________CC__CAGA_AGGACUAG\n3'-UUU...CCGAU____UAU___C_____UACACUCGU_______A____A____A____G___________________________________CG-5'\n_____________|___________________________________________________________________________________|\n_____________68__________________________________________________________________________________2\n |
281 -- 287 |
3 -- 9 |
-42.8726 kcal/mol |
17.657 kcal/mol |
14.1245 kcal/mol |
207 288@LB@ | |@LB@5'-AUU...GGACU U A CUAAAAAAUU C G G G CGCAAAGAGUACU AU A AACAU...UUA-3'@LB@ GGUA CUG AAGUA AUGUCG GUUU CGGG UC U CGCGG GG GUUU UUCUGGUC@LB@ :||| ||| |||:| |||||| |:|| |:|| || | ||||: || ||:| |:|||:||@LB@ UCAU GAC UUCGU UACAGC CGAA GUCC AG A GCGCU CC CAGA AGGACUAG@LB@3'-UUU...CCGAU UAU C UACACUCGU A A A G CG-5'@LB@ | |@LB@ 68 2@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -42.8726 kcal/mol@LB@Unfolding Energy - mRNA 17.657 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 208 -- 287@LB@Position - sRNA 3 -- 67@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 3 -- 9@LB@ |
144 |
0.01729 |
0.3998 |
b2913 |
serA |
-13.50 |
0.049990 |
182 -- 221 |
55 -- 90 |
D-3-phosphoglycerate dehydrogenase |
|
_____________181______________________________________222\n_____________|________________________________________|\n5'-UGU...AUUUC_____A___G___G___AAA____AA_____UC_______AAAGA...CCA-3'\n______________AAAAG_CAG_AUU_GGU___UGGC__AGGUA__GCUGGAG\n______________|||||_|||_|::_||:___||||__|:|||__:|||||:\n______________UUUUC_GUC_UGG_CCG___ACCG__UUCAU__UGACCUU\n___________3'-_____G___G___G__________A______UA_______CGUUA...GCG-5'\n______________|_______________________________________|\n______________90______________________________________54\n |
215 -- 221 |
55 -- 61 |
-33.5694 kcal/mol |
6.44391 kcal/mol |
13.6256 kcal/mol |
181 222@LB@ | |@LB@5'-UGU...AUUUC A G G AAA AA UC AAAGA...CCA-3'@LB@ AAAAG CAG AUU GGU UGGC AGGUA GCUGGAG@LB@ ||||| ||| |:: ||: |||| |:||| :|||||:@LB@ UUUUC GUC UGG CCG ACCG UUCAU UGACCUU@LB@ 3'- G G G A UA CGUUA...GCG-5'@LB@ | |@LB@ 90 54@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -33.5694 kcal/mol@LB@Unfolding Energy - mRNA 6.44391 kcal/mol@LB@Unfolding Energy - sRNA 13.6256 kcal/mol@LB@@LB@Position - mRNA 182 -- 221@LB@Position - sRNA 55 -- 90@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 55 -- 61@LB@ |
145 |
0.01736 |
0.3998 |
b1607 |
ydgC |
-14.56 |
0.032924 |
216 -- 264 |
42 -- 89 |
GlpM family inner membrane protein |
|
_____________215__________________________________________________265\n_____________|____________________________________________________|\n5'-AUG...UAAUC________________GC______________UU__U_______UUU_____AAACG...CAC-3'\n______________AAAGCC_GCGCUCGGU__GCU_GGUAGUGCUG__GA__UGGUGU___AGCAA\n______________||||||_||:|:|||:__|||_:|||:|:|||__||__:::|||___|||||\n______________UUUCGG_CGUGGGCCG__CGA_UCAUUAUGAC__CU__GUUACA___UCGUU\n__________3'-U______U_________AC___U______________UC______C_______ACAGC...GCG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________41\n |
239 -- 245 |
58 -- 64 |
-48.2837 kcal/mol |
18.8097 kcal/mol |
14.9103 kcal/mol |
215 265@LB@ | |@LB@5'-AUG...UAAUC GC UU U UUU AAACG...CAC-3'@LB@ AAAGCC GCGCUCGGU GCU GGUAGUGCUG GA UGGUGU AGCAA@LB@ |||||| ||:|:|||: ||| :|||:|:||| || :::||| |||||@LB@ UUUCGG CGUGGGCCG CGA UCAUUAUGAC CU GUUACA UCGUU@LB@ 3'-U U AC U UC C ACAGC...GCG-5'@LB@ | |@LB@ 90 41@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -48.2837 kcal/mol@LB@Unfolding Energy - mRNA 18.8097 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 216 -- 264@LB@Position - sRNA 42 -- 89@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 58 -- 64@LB@ |
146 |
0.01749 |
0.3998 |
b1611 |
fumC |
-5.84 |
0.669018 |
232 -- 244 |
46 -- 59 |
fumarate hydratase (fumarase C) aerobic Class II |
|
_____________231____________245\n_____________|______________|\n5'-AGG...UUCGA______________UGUCC...UCC-3'\n______________UGGGGGCGAU_UGA\n______________|||::||:||_|||\n______________ACCUUCGUUA_ACU\n3'-UUU...UUAUG__________C___CGUUA...GCG-5'\n_____________|______________|\n_____________60_____________45\n |
233 -- 239 |
52 -- 58 |
-14.3864 kcal/mol |
5.35896 kcal/mol |
3.18972 kcal/mol |
231 245@LB@ | |@LB@5'-AGG...UUCGA UGUCC...UCC-3'@LB@ UGGGGGCGAU UGA@LB@ |||::||:|| |||@LB@ ACCUUCGUUA ACU@LB@3'-UUU...UUAUG C CGUUA...GCG-5'@LB@ | |@LB@ 60 45@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -14.3864 kcal/mol@LB@Unfolding Energy - mRNA 5.35896 kcal/mol@LB@Unfolding Energy - sRNA 3.18972 kcal/mol@LB@@LB@Position - mRNA 232 -- 244@LB@Position - sRNA 46 -- 59@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 52 -- 58@LB@ |
147 |
0.01756 |
0.3998 |
b2204 |
napH |
-8.83 |
0.283291 |
175 -- 212 |
36 -- 85 |
ferredoxin-type protein |
|
_____________174________________________________________________213\n_____________|__________________________________________________|\n5'-CAC...CAUUA_______________________GG___________________A_____AAACG...UCU-3'\n______________CC_GC_UUCGGCUGGCUG___GA____GGAA_CAAUG___GCAA__UCGU\n______________||_||_::|||||||||:___:|____||||_|||||___||||__||||\n______________GG_CG_GGGCCGACCGAU___UU____CCUU_GUUAC___CGUU__AGCA\n______3'-UUUUC__U__U____________UCA__AUGA____C_____ACU____AC____CGAAA...GCG-5'\n_____________|__________________________________________________|\n_____________86_________________________________________________35\n |
183 -- 189 |
69 -- 75 |
-37.9033 kcal/mol |
14.1609 kcal/mol |
14.9108 kcal/mol |
174 213@LB@ | |@LB@5'-CAC...CAUUA GG A AAACG...UCU-3'@LB@ CC GC UUCGGCUGGCUG GA GGAA CAAUG GCAA UCGU@LB@ || || ::|||||||||: :| |||| ||||| |||| ||||@LB@ GG CG GGGCCGACCGAU UU CCUU GUUAC CGUU AGCA@LB@ 3'-UUUUC U U UCA AUGA C ACU AC CGAAA...GCG-5'@LB@ | |@LB@ 86 35@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -37.9033 kcal/mol@LB@Unfolding Energy - mRNA 14.1609 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 175 -- 212@LB@Position - sRNA 36 -- 85@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 69 -- 75@LB@ |
148 |
0.01761 |
0.3998 |
b4262 |
lptG |
-10.98 |
0.131149 |
190 -- 206 |
42 -- 57 |
lipopolysaccharide export ABC permease |
|
_____________189_______________207\n_____________|_________________|\n5'-CCA...GUAAA____________U____CCUUU...UCA-3'\n______________GGAGCGGUGUGA_GCAA\n______________|:|||::|||||_||||\n______________CUUCGUUACACU_CGUU\n3'-UUU...AUGAC_________________ACAGC...GCG-5'\n_____________|_________________|\n_____________58________________41\n |
195 -- 201 |
46 -- 52 |
-21.8951 kcal/mol |
7.70229 kcal/mol |
3.20882 kcal/mol |
189 207@LB@ | |@LB@5'-CCA...GUAAA U CCUUU...UCA-3'@LB@ GGAGCGGUGUGA GCAA@LB@ |:|||::||||| ||||@LB@ CUUCGUUACACU CGUU@LB@3'-UUU...AUGAC ACAGC...GCG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -21.8951 kcal/mol@LB@Unfolding Energy - mRNA 7.70229 kcal/mol@LB@Unfolding Energy - sRNA 3.20882 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
149 |
0.01819 |
0.4072 |
b2708 |
srlQ |
-10.57 |
0.153166 |
157 -- 203 |
40 -- 61 |
D-arabinose 5-phosphate isomerase |
|
_____________156_____________________________________________204\n_____________|_______________________________________________|\n5'-UAC...CAGGC________AGAAAGGGAU______GAUCAUAACCGGAGA________AGUGA...GCG-3'\n______________GCUGGAAG__________CGAUGU_______________GAGCAAUG\n______________:|||||||__________|:||||_______________||||||||\n______________UGACCUUC__________GUUACA_______________CUCGUUAC\n3'-UUU...CAUUA_______________________________________________AGCAC...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________39\n |
197 -- 203 |
40 -- 46 |
-23.3244 kcal/mol |
9.45822 kcal/mol |
3.30075 kcal/mol |
156 204@LB@ | |@LB@5'-UAC...CAGGC AGAAAGGGAU GAUCAUAACCGGAGA AGUGA...GCG-3'@LB@ GCUGGAAG CGAUGU GAGCAAUG@LB@ :||||||| |:|||| ||||||||@LB@ UGACCUUC GUUACA CUCGUUAC@LB@3'-UUU...CAUUA AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -10.57 kcal/mol@LB@Hybridization Energy -23.3244 kcal/mol@LB@Unfolding Energy - mRNA 9.45822 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 40 -- 46@LB@ |
150 |
0.01825 |
0.4072 |
b3255 |
accB |
-12.43 |
0.075652 |
231 -- 278 |
1 -- 47 |
acetyl CoA carboxylase BCCP subunit |
|
_____________230_______________________________________________279\n_____________|_________________________________________________|\n5'-UUU...UGAUC____UG_____AAGAA_____CA______AACU__AAA_______AG__GAAGA...GCC-3'\n______________GAGC___GUUG_____UCAGG__UCUCCG____GG___UUUCUGA__GC\n______________||||___||:|_____|||||__||||||____||___||:||||__||\n______________CUCG___CAGC_____AGUCC__AGAGGC____CC___AAGGACU__CG\n3'-UUU...UUACA____UUA____ACGAA_____A_______GCU___CAG_______AG__-5'\n_____________|________________________________________________|\n_____________48_______________________________________________1\n |
268 -- 274 |
5 -- 11 |
-38.2829 kcal/mol |
12.4901 kcal/mol |
13.3604 kcal/mol |
230 279@LB@ | |@LB@5'-UUU...UGAUC UG AAGAA CA AACU AAA AG GAAGA...GCC-3'@LB@ GAGC GUUG UCAGG UCUCCG GG UUUCUGA GC@LB@ |||| ||:| ||||| |||||| || ||:|||| ||@LB@ CUCG CAGC AGUCC AGAGGC CC AAGGACU CG@LB@3'-UUU...UUACA UUA ACGAA A GCU CAG AG -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -38.2829 kcal/mol@LB@Unfolding Energy - mRNA 12.4901 kcal/mol@LB@Unfolding Energy - sRNA 13.3604 kcal/mol@LB@@LB@Position - mRNA 231 -- 278@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 5 -- 11@LB@ |
151 |
0.01843 |
0.4072 |
b4028 |
yjbG |
-13.08 |
0.058794 |
282 -- 297 |
40 -- 55 |
extracellular polysaccharide export OMA protein |
|
_____________281______________298\n_____________|________________|\n5'-AAA...UGUUC_______GC_______AGG-3'\n______________AGCAAUG__AGCAGUG\n______________|||||||__||||:||\n______________UCGUUAC__UCGUUAC\n3'-UUU...GACCU_______AC_______AGCAC...GCG-5'\n_____________|________________|\n_____________56_______________39\n |
291 -- 297 |
40 -- 46 |
-18.8155 kcal/mol |
2.52344 kcal/mol |
3.20849 kcal/mol |
281 298@LB@ | |@LB@5'-AAA...UGUUC GC AGG-3'@LB@ AGCAAUG AGCAGUG@LB@ ||||||| ||||:||@LB@ UCGUUAC UCGUUAC@LB@3'-UUU...GACCU AC AGCAC...GCG-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -18.8155 kcal/mol@LB@Unfolding Energy - mRNA 2.52344 kcal/mol@LB@Unfolding Energy - sRNA 3.20849 kcal/mol@LB@@LB@Position - mRNA 282 -- 297@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 40 -- 46@LB@ |
152 |
0.0188 |
0.4072 |
b0950 |
pqiA |
-8.64 |
0.302533 |
34 -- 75 |
1 -- 61 |
paraquat-inducible SoxRS-regulated inner membrane protein |
|
_____________33_____________________________________________________________76\n_____________|______________________________________________________________|\n5'-CUG...UGAAC__________UCU__A______________________AAAAAAU_____GG__________AAAAU...GUC-3'\n______________GCUGGGAGUA___UG_AGC________________GUU_________GGU____CUGAUCGC\n______________:||||:||:|___||_|||________________|||_________|||____||||||||\n______________UGACCUUCGU___AC_UCG________________CAA_________CCA____GACUAGCG\n3'-UUU...CAUUA__________UAC______UUACAGCACGAAAGUC___GAGGCGCUC___GAAG________-5'\n_____________|_____________________________________________________________|\n_____________62____________________________________________________________1\n |
69 -- 75 |
1 -- 7 |
-32.0531 kcal/mol |
9.29686 kcal/mol |
14.1206 kcal/mol |
33 76@LB@ | |@LB@5'-CUG...UGAAC UCU A AAAAAAU GG AAAAU...GUC-3'@LB@ GCUGGGAGUA UG AGC GUU GGU CUGAUCGC@LB@ :||||:||:| || ||| ||| ||| ||||||||@LB@ UGACCUUCGU AC UCG CAA CCA GACUAGCG@LB@3'-UUU...CAUUA UAC UUACAGCACGAAAGUC GAGGCGCUC GAAG -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -32.0531 kcal/mol@LB@Unfolding Energy - mRNA 9.29686 kcal/mol@LB@Unfolding Energy - sRNA 14.1206 kcal/mol@LB@@LB@Position - mRNA 34 -- 75@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 1 -- 7@LB@ |
153 |
0.01881 |
0.4072 |
b3524 |
yhjG |
-16.11 |
0.017836 |
180 -- 208 |
42 -- 68 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________179____________________________209\n_____________|______________________________|\n5'-UUG...ACAGG_________GA________ACGA_______GGCAG...GAC-3'\n______________AAG_AAUAU__GGAAGCGA____UGAGCAA\n______________|||_||||:__||||||:|____|||||||\n______________UUC_UUAUG__CCUUCGUU____ACUCGUU\n3'-UUU...ACCGA___A_____A_________AC_________ACAGC...GCG-5'\n_____________|______________________________|\n_____________69_____________________________41\n |
202 -- 208 |
42 -- 48 |
-23.3114 kcal/mol |
3.89448 kcal/mol |
3.30492 kcal/mol |
179 209@LB@ | |@LB@5'-UUG...ACAGG GA ACGA GGCAG...GAC-3'@LB@ AAG AAUAU GGAAGCGA UGAGCAA@LB@ ||| ||||: ||||||:| |||||||@LB@ UUC UUAUG CCUUCGUU ACUCGUU@LB@3'-UUU...ACCGA A A AC ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -23.3114 kcal/mol@LB@Unfolding Energy - mRNA 3.89448 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 180 -- 208@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
154 |
0.01903 |
0.4072 |
b2823 |
ppdC |
-17.47 |
0.010387 |
242 -- 260 |
40 -- 58 |
putative prepilin peptidase-dependent protein |
|
_____________241_________________261\n_____________|___________________|\n5'-ACG...CUGCC___________U_______GUGUU...UCC-3'\n______________GGAGGUAAUGU_GGCGAUG\n______________|||:|:|||||_:||:|||\n______________CCUUCGUUACA_UCGUUAC\n3'-UUU...UAUGA___________C_______AGCAC...GCG-5'\n_____________|___________________|\n_____________59__________________39\n |
254 -- 260 |
40 -- 46 |
-26.2879 kcal/mol |
5.60197 kcal/mol |
3.21578 kcal/mol |
241 261@LB@ | |@LB@5'-ACG...CUGCC U GUGUU...UCC-3'@LB@ GGAGGUAAUGU GGCGAUG@LB@ |||:|:||||| :||:|||@LB@ CCUUCGUUACA UCGUUAC@LB@3'-UUU...UAUGA C AGCAC...GCG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -17.47 kcal/mol@LB@Hybridization Energy -26.2879 kcal/mol@LB@Unfolding Energy - mRNA 5.60197 kcal/mol@LB@Unfolding Energy - sRNA 3.21578 kcal/mol@LB@@LB@Position - mRNA 242 -- 260@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 40 -- 46@LB@ |
155 |
0.01913 |
0.4072 |
b2022 |
hisB |
-9.38 |
0.234588 |
182 -- 245 |
3 -- 62 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________181__________________________________________________________________246\n_____________|____________________________________________________________________|\n5'-CAG...CGCCU___G__C_______GUU__A_____CAGAA___AU_____UA____GA______U__AAC________AGCGA...AAC-3'\n______________UAC_UG_GGAGCAA___UG_UGAGU______GU__CUUUU____UC__UCGCGA_GG____CCUGAUU\n______________|||_||_|:|||||___||_||||:______||__||||:____||__:|||||_||____||||||:\n______________AUG_AC_CUUCGUU___AC_ACUCG______CA__GAAAG____AG__GGCGCU_CC____GGACUAG\n3'-UUU...UCAUU_________________________UUACAG__C______UCCA__A_______C__AGAA_______CG-5'\n_____________|____________________________________________________________________|\n_____________63___________________________________________________________________2\n |
239 -- 245 |
3 -- 9 |
-38.4245 kcal/mol |
14.9226 kcal/mol |
14.1216 kcal/mol |
181 246@LB@ | |@LB@5'-CAG...CGCCU G C GUU A CAGAA AU UA GA U AAC AGCGA...AAC-3'@LB@ UAC UG GGAGCAA UG UGAGU GU CUUUU UC UCGCGA GG CCUGAUU@LB@ ||| || |:||||| || ||||: || ||||: || :||||| || ||||||:@LB@ AUG AC CUUCGUU AC ACUCG CA GAAAG AG GGCGCU CC GGACUAG@LB@3'-UUU...UCAUU UUACAG C UCCA A C AGAA CG-5'@LB@ | |@LB@ 63 2@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -38.4245 kcal/mol@LB@Unfolding Energy - mRNA 14.9226 kcal/mol@LB@Unfolding Energy - sRNA 14.1216 kcal/mol@LB@@LB@Position - mRNA 182 -- 245@LB@Position - sRNA 3 -- 62@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 3 -- 9@LB@ |
156 |
0.0192 |
0.4072 |
b0472 |
recR |
-11.39 |
0.112512 |
68 -- 82 |
54 -- 68 |
gap repair protein |
|
_____________67______________83\n_____________|_______________|\n5'-GUG...CGACA___A___________ACCUG...UUC-3'\n______________AAG_GAUGCUGGAAG\n______________|||_:||:|||||||\n______________UUC_UUAUGACCUUC\n3'-UUU...ACCGA___A___________GUUAC...GCG-5'\n_____________|_______________|\n_____________69______________53\n |
76 -- 82 |
54 -- 60 |
-16.6291 kcal/mol |
2.52602 kcal/mol |
2.71091 kcal/mol |
67 83@LB@ | |@LB@5'-GUG...CGACA A ACCUG...UUC-3'@LB@ AAG GAUGCUGGAAG@LB@ ||| :||:|||||||@LB@ UUC UUAUGACCUUC@LB@3'-UUU...ACCGA A GUUAC...GCG-5'@LB@ | |@LB@ 69 53@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -16.6291 kcal/mol@LB@Unfolding Energy - mRNA 2.52602 kcal/mol@LB@Unfolding Energy - sRNA 2.71091 kcal/mol@LB@@LB@Position - mRNA 68 -- 82@LB@Position - sRNA 54 -- 68@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 54 -- 60@LB@ |
157 |
0.0194 |
0.4072 |
b2720 |
hycF |
-4.41 |
0.858528 |
100 -- 115 |
42 -- 59 |
formate hydrogenlyase complex iron-sulfur protein |
|
_____________99_________________116\n_____________|__________________|\n5'-CGA...GACCG___U_________C____GAAGA...CAG-3'\n______________UGG___CGAUGUG_GUAA\n______________|||___|:|||||_|:||\n______________ACC___GUUACAC_CGUU\n3'-UUU...UUAUG___UUC_______U____ACAGC...GCG-5'\n_____________|__________________|\n_____________60_________________41\n |
104 -- 110 |
47 -- 53 |
-13.6757 kcal/mol |
5.98921 kcal/mol |
3.27185 kcal/mol |
99 116@LB@ | |@LB@5'-CGA...GACCG U C GAAGA...CAG-3'@LB@ UGG CGAUGUG GUAA@LB@ ||| |:||||| |:||@LB@ ACC GUUACAC CGUU@LB@3'-UUU...UUAUG UUC U ACAGC...GCG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -4.41 kcal/mol@LB@Hybridization Energy -13.6757 kcal/mol@LB@Unfolding Energy - mRNA 5.98921 kcal/mol@LB@Unfolding Energy - sRNA 3.27185 kcal/mol@LB@@LB@Position - mRNA 100 -- 115@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 47 -- 53@LB@ |
158 |
0.01943 |
0.4072 |
b1941 |
fliI |
-13.60 |
0.048038 |
205 -- 238 |
56 -- 85 |
flagellum-specific ATP synthase |
|
_____________204_________________________________239\n_____________|___________________________________|\n5'-CUG...AAUGA___C_______ACUC_________CCAC_______UAACU...GCG-3'\n______________CCA_GCGCCUG____GCUGGCUAA_____GCUGGA\n______________|||_||:||:|____|||||||||_____:|||||\n______________GGU_CGUGGGC____CGACCGAUU_____UGACCU\n______3'-UUUUC________________________CAUUA______UCGUU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________55\n |
221 -- 227 |
68 -- 74 |
-38.0474 kcal/mol |
10.8324 kcal/mol |
13.6134 kcal/mol |
204 239@LB@ | |@LB@5'-CUG...AAUGA C ACUC CCAC UAACU...GCG-3'@LB@ CCA GCGCCUG GCUGGCUAA GCUGGA@LB@ ||| ||:||:| ||||||||| :|||||@LB@ GGU CGUGGGC CGACCGAUU UGACCU@LB@ 3'-UUUUC CAUUA UCGUU...GCG-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -38.0474 kcal/mol@LB@Unfolding Energy - mRNA 10.8324 kcal/mol@LB@Unfolding Energy - sRNA 13.6134 kcal/mol@LB@@LB@Position - mRNA 205 -- 238@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 68 -- 74@LB@ |
159 |
0.02005 |
0.4072 |
b1725 |
yniA |
-13.71 |
0.046110 |
65 -- 84 |
43 -- 60 |
fructosamine kinase family protein |
|
_____________64___________________85\n_____________|____________________|\n5'-GAG...ACGAC_______G____GAAU____ACAGA...GGC-3'\n______________CUGGGAG_AAUG____AGCA\n______________||||:||_||||____||||\n______________GACCUUC_UUAC____UCGU\n3'-UUU...AUUAU_______G____AC______UACAG...GCG-5'\n_____________|____________________|\n_____________61___________________42\n |
65 -- 71 |
54 -- 60 |
-19.5513 kcal/mol |
2.54567 kcal/mol |
3.29917 kcal/mol |
64 85@LB@ | |@LB@5'-GAG...ACGAC G GAAU ACAGA...GGC-3'@LB@ CUGGGAG AAUG AGCA@LB@ ||||:|| |||| ||||@LB@ GACCUUC UUAC UCGU@LB@3'-UUU...AUUAU G AC UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -19.5513 kcal/mol@LB@Unfolding Energy - mRNA 2.54567 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 65 -- 84@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 54 -- 60@LB@ |
160 |
0.02006 |
0.4072 |
b1205 |
ychH |
-13.92 |
0.042333 |
252 -- 283 |
22 -- 60 |
DUF2583 family putative inner membrane protein |
|
_____________251_____________________________________284\n_____________|_______________________________________|\n5'-CAA...UGGGU____U____________G_________G__G____A___AAUCC...UAC-3'\n______________CUGG_GGUAAUG___GU___GUCG_GC__U_GGGU_UUC\n______________||||_:|:||||___|:___||||_||__|_:|||_:||\n______________GACC_UCGUUAC___CG___CAGC_CG__A_UCCA_GAG\n3'-UUU...AUUAU____U_______ACU__UUA____A__AA_G____A___GCGCU...GCG-5'\n_____________|_______________________________________|\n_____________61______________________________________21\n |
257 -- 263 |
49 -- 55 |
-28.0186 kcal/mol |
6.10632 kcal/mol |
7.98777 kcal/mol |
251 284@LB@ | |@LB@5'-CAA...UGGGU U G G G A AAUCC...UAC-3'@LB@ CUGG GGUAAUG GU GUCG GC U GGGU UUC@LB@ |||| :|:|||| |: |||| || | :||| :||@LB@ GACC UCGUUAC CG CAGC CG A UCCA GAG@LB@3'-UUU...AUUAU U ACU UUA A AA G A GCGCU...GCG-5'@LB@ | |@LB@ 61 21@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -28.0186 kcal/mol@LB@Unfolding Energy - mRNA 6.10632 kcal/mol@LB@Unfolding Energy - sRNA 7.98777 kcal/mol@LB@@LB@Position - mRNA 252 -- 283@LB@Position - sRNA 22 -- 60@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 49 -- 55@LB@ |
161 |
0.02011 |
0.4072 |
b2820 |
recB |
-12.55 |
0.072418 |
202 -- 213 |
37 -- 48 |
exonuclease V (RecBCD complex) beta subunit |
|
_____________201__________214\n_____________|____________|\n5'-GGC...AAGAA____________CCGAG...UUG-3'\n______________UGAGUGAUGUCG\n______________||||::||||||\n______________ACUCGUUACAGC\n3'-UUU...GUUAC____________ACGAA...GCG-5'\n_____________|____________|\n_____________49___________36\n |
207 -- 213 |
37 -- 43 |
-16.4196 kcal/mol |
2.71715 kcal/mol |
1.1567 kcal/mol |
201 214@LB@ | |@LB@5'-GGC...AAGAA CCGAG...UUG-3'@LB@ UGAGUGAUGUCG@LB@ ||||::||||||@LB@ ACUCGUUACAGC@LB@3'-UUU...GUUAC ACGAA...GCG-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -16.4196 kcal/mol@LB@Unfolding Energy - mRNA 2.71715 kcal/mol@LB@Unfolding Energy - sRNA 1.1567 kcal/mol@LB@@LB@Position - mRNA 202 -- 213@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 37 -- 43@LB@ |
162 |
0.02022 |
0.4072 |
b3354 |
yheU |
-12.65 |
0.069641 |
153 -- 196 |
51 -- 89 |
UPF0270 family protein |
|
_____________152__________________________________________197\n_____________|____________________________________________|\n5'-CUG...UGGCU_______C___UU____A________CAAC___U__________AAUCA...GUA-3'\n______________GGAGUCA_GCA__CCUG_CUGGUUAA____GUA_CUGGAGGCGA\n______________::||:||_|||__||:|_||||:|||____:||_|||||:||:|\n______________UUUCGGU_CGU__GGGC_GACCGAUU____UAU_GACCUUCGUU\n__________3'-U_________________C________CAU_______________ACACU...GCG-5'\n_____________|____________________________________________|\n_____________90___________________________________________50\n |
189 -- 195 |
52 -- 58 |
-41.3188 kcal/mol |
14.1702 kcal/mol |
14.5017 kcal/mol |
152 197@LB@ | |@LB@5'-CUG...UGGCU C UU A CAAC U AAUCA...GUA-3'@LB@ GGAGUCA GCA CCUG CUGGUUAA GUA CUGGAGGCGA@LB@ ::||:|| ||| ||:| ||||:||| :|| |||||:||:|@LB@ UUUCGGU CGU GGGC GACCGAUU UAU GACCUUCGUU@LB@ 3'-U C CAU ACACU...GCG-5'@LB@ | |@LB@ 90 50@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -41.3188 kcal/mol@LB@Unfolding Energy - mRNA 14.1702 kcal/mol@LB@Unfolding Energy - sRNA 14.5017 kcal/mol@LB@@LB@Position - mRNA 153 -- 196@LB@Position - sRNA 51 -- 89@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
163 |
0.02026 |
0.4072 |
b1283 |
osmB |
-10.88 |
0.136535 |
231 -- 259 |
38 -- 61 |
osmotically and stress inducible lipoprotein |
|
_____________230___________________________260\n_____________|_____________________________|\n5'-UAA...CCGCG____UUCU______UACUUU_________UCUGA...ACA-3'\n______________GCUG____GGCAAU______GGCAAUGUC\n______________:|||____:|||||______:||||||||\n______________UGAC____UCGUUA______UCGUUACAG\n3'-UUU...CAUUA____CU________CAC____________CACGA...GCG-5'\n_____________|_____________________________|\n_____________62____________________________37\n |
253 -- 259 |
38 -- 44 |
-21.4164 kcal/mol |
7.23917 kcal/mol |
3.30134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCGCG UUCU UACUUU UCUGA...ACA-3'@LB@ GCUG GGCAAU GGCAAUGUC@LB@ :||| :||||| :||||||||@LB@ UGAC UCGUUA UCGUUACAG@LB@3'-UUU...CAUUA CU CAC CACGA...GCG-5'@LB@ | |@LB@ 62 37@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -21.4164 kcal/mol@LB@Unfolding Energy - mRNA 7.23917 kcal/mol@LB@Unfolding Energy - sRNA 3.30134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 38 -- 61@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 38 -- 44@LB@ |
164 |
0.02028 |
0.4072 |
b3295 |
rpoA |
-11.98 |
0.089862 |
19 -- 43 |
66 -- 90 |
RNA polymerase alpha subunit |
|
_____________18_________________________44\n_____________|__________________________|\n5'-GAA...CGCGU__________U__G_A__________CAGCG...GUG-3'\n______________GAAAGCC_GC_CU_G_GCUGGCUGAG\n______________:||||||_||_|:_|_|||||||:||\n______________UUUUCGG_CG_GG_C_CGACCGAUUC\n___________3'-_______U__U__G____________AUUAU...GCG-5'\n______________|_________________________|\n______________90________________________65\n |
37 -- 43 |
66 -- 72 |
-33.5627 kcal/mol |
9.82436 kcal/mol |
11.7544 kcal/mol |
18 44@LB@ | |@LB@5'-GAA...CGCGU U G A CAGCG...GUG-3'@LB@ GAAAGCC GC CU G GCUGGCUGAG@LB@ :|||||| || |: | |||||||:||@LB@ UUUUCGG CG GG C CGACCGAUUC@LB@ 3'- U U G AUUAU...GCG-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.5627 kcal/mol@LB@Unfolding Energy - mRNA 9.82436 kcal/mol@LB@Unfolding Energy - sRNA 11.7544 kcal/mol@LB@@LB@Position - mRNA 19 -- 43@LB@Position - sRNA 66 -- 90@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 66 -- 72@LB@ |
165 |
0.02037 |
0.4072 |
b1981 |
shiA |
-10.79 |
0.140980 |
142 -- 153 |
44 -- 55 |
shikimate transporter |
|
_____________141__________154\n_____________|____________|\n5'-CUG...UCGAC____________UACCU...UCG-3'\n______________GGCAAUGUGAGU\n______________:||||||||||:\n______________UCGUUACACUCG\n3'-UUU...GACCU____________UUACA...GCG-5'\n_____________|____________|\n_____________56___________43\n |
147 -- 153 |
44 -- 50 |
-18.9093 kcal/mol |
4.9192 kcal/mol |
3.20048 kcal/mol |
141 154@LB@ | |@LB@5'-CUG...UCGAC UACCU...UCG-3'@LB@ GGCAAUGUGAGU@LB@ :||||||||||:@LB@ UCGUUACACUCG@LB@3'-UUU...GACCU UUACA...GCG-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -18.9093 kcal/mol@LB@Unfolding Energy - mRNA 4.9192 kcal/mol@LB@Unfolding Energy - sRNA 3.20048 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 44 -- 50@LB@ |
166 |
0.02064 |
0.4072 |
b0429 |
cyoD |
-11.77 |
0.097498 |
188 -- 206 |
44 -- 59 |
cytochrome o ubiquinol oxidase subunit IV |
|
_____________187_________________207\n_____________|___________________|\n5'-UUC...UCUGA____________AAU____CAUUC...UCU-3'\n______________UGGGGGCGAUGU___GAGU\n______________|||::||:||||___|||:\n______________ACCUUCGUUACA___CUCG\n3'-UUU...UUAUG___________________UUACA...GCG-5'\n_____________|___________________|\n_____________60__________________43\n |
193 -- 199 |
48 -- 54 |
-20.4312 kcal/mol |
5.39053 kcal/mol |
3.27056 kcal/mol |
187 207@LB@ | |@LB@5'-UUC...UCUGA AAU CAUUC...UCU-3'@LB@ UGGGGGCGAUGU GAGU@LB@ |||::||:|||| |||:@LB@ ACCUUCGUUACA CUCG@LB@3'-UUU...UUAUG UUACA...GCG-5'@LB@ | |@LB@ 60 43@LB@@LB@@LB@Energy -11.77 kcal/mol@LB@Hybridization Energy -20.4312 kcal/mol@LB@Unfolding Energy - mRNA 5.39053 kcal/mol@LB@Unfolding Energy - sRNA 3.27056 kcal/mol@LB@@LB@Position - mRNA 188 -- 206@LB@Position - sRNA 44 -- 59@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 48 -- 54@LB@ |
167 |
0.02069 |
0.4072 |
b2897 |
sdhE |
-17.17 |
0.011699 |
7 -- 68 |
8 -- 56 |
flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair |
|
_____________6_______________________________________________________________69\n_____________|_______________________________________________________________|\n_____5'-GUAAAA____U___A________CAA_________CUACGCGAUCUGUGCC__________C_A_____AAAAA...ACA-3'\n______________GAGC_AUG__GGCAAUG___GUGCUUUCA________________UUCUGCGAGG_G_CUUCC\n______________:|||_|||__:||||||___|||||||||________________:||:||||||_|_|||||\n______________UUCG_UAC__UCGUUAC___CACGAAAGU________________GAGGCGCUCC_C_GAAGG\n3'-UUU...UGACC____U___AC_______AG__________CCAA________________________A_____ACUAGCG-5'\n_____________|_______________________________________________________________|\n_____________57______________________________________________________________7\n |
54 -- 60 |
15 -- 21 |
-49.3967 kcal/mol |
18.1865 kcal/mol |
14.0385 kcal/mol |
6 69@LB@ | |@LB@ 5'-GUAAAA U A CAA CUACGCGAUCUGUGCC C A AAAAA...ACA-3'@LB@ GAGC AUG GGCAAUG GUGCUUUCA UUCUGCGAGG G CUUCC@LB@ :||| ||| :|||||| ||||||||| :||:|||||| | |||||@LB@ UUCG UAC UCGUUAC CACGAAAGU GAGGCGCUCC C GAAGG@LB@3'-UUU...UGACC U AC AG CCAA A ACUAGCG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -17.17 kcal/mol@LB@Hybridization Energy -49.3967 kcal/mol@LB@Unfolding Energy - mRNA 18.1865 kcal/mol@LB@Unfolding Energy - sRNA 14.0385 kcal/mol@LB@@LB@Position - mRNA 7 -- 68@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 15 -- 21@LB@ |
168 |
0.02071 |
0.4072 |
b2431 |
yfeX |
-10.86 |
0.137197 |
192 -- 213 |
24 -- 58 |
porphyrinogen oxidase cytoplasmic |
|
_____________191_________________________________214\n_____________|___________________________________|\n5'-AUU...UUUCA_____AA____________________________AGAGU...CCA-3'\n______________GGAGG_________CAAUGUC______UCAGGUUC\n______________|||:|_________|||||||______||||||||\n______________CCUUC_________GUUACAG______AGUCCAAG\n3'-UUU...UAUGA_____GUUACACUC_______CACGAA________AGGCG...GCG-5'\n_____________|___________________________________|\n_____________59__________________________________23\n |
207 -- 213 |
24 -- 30 |
-23.408 kcal/mol |
4.6321 kcal/mol |
7.91302 kcal/mol |
191 214@LB@ | |@LB@5'-AUU...UUUCA AA AGAGU...CCA-3'@LB@ GGAGG CAAUGUC UCAGGUUC@LB@ |||:| ||||||| ||||||||@LB@ CCUUC GUUACAG AGUCCAAG@LB@3'-UUU...UAUGA GUUACACUC CACGAA AGGCG...GCG-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -23.408 kcal/mol@LB@Unfolding Energy - mRNA 4.6321 kcal/mol@LB@Unfolding Energy - sRNA 7.91302 kcal/mol@LB@@LB@Position - mRNA 192 -- 213@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 24 -- 30@LB@ |
169 |
0.02092 |
0.4072 |
b4471 |
tdcG |
-11.09 |
0.126171 |
119 -- 152 |
36 -- 66 |
L-serine dehydratase 3 anaerobic |
|
_____________118________________________________153\n_____________|__________________________________|\n5'-AAC...AGUAC_______GUA____CUC_______GGACG_____AAGGU...UGG-3'\n______________GUAGUGC___AAGC___GUGAGCG_____GUCGU\n______________|||:|:|___||||___||||||:_____|||||\n______________CAUUAUG___UUCG___CACUCGU_____CAGCA\n3'-UUU...CGAUU_______ACC____UUA_______UA________CGAAA...GCG-5'\n_____________|__________________________________|\n_____________67_________________________________35\n |
136 -- 142 |
43 -- 49 |
-27.48 kcal/mol |
13.0871 kcal/mol |
3.30555 kcal/mol |
118 153@LB@ | |@LB@5'-AAC...AGUAC GUA CUC GGACG AAGGU...UGG-3'@LB@ GUAGUGC AAGC GUGAGCG GUCGU@LB@ |||:|:| |||| ||||||: |||||@LB@ CAUUAUG UUCG CACUCGU CAGCA@LB@3'-UUU...CGAUU ACC UUA UA CGAAA...GCG-5'@LB@ | |@LB@ 67 35@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -27.48 kcal/mol@LB@Unfolding Energy - mRNA 13.0871 kcal/mol@LB@Unfolding Energy - sRNA 3.30555 kcal/mol@LB@@LB@Position - mRNA 119 -- 152@LB@Position - sRNA 36 -- 66@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 43 -- 49@LB@ |
170 |
0.02096 |
0.4072 |
b2283 |
nuoG |
-12.68 |
0.068788 |
186 -- 195 |
52 -- 61 |
NADH:ubiquinone oxidoreductase chain G |
|
_____________185________196\n_____________|__________|\n5'-CUG...AGAAA__________UGCUA...UUU-3'\n______________ACUGGAAGCA\n______________||||||||||\n______________UGACCUUCGU\n3'-UUU...CAUUA__________UACAC...GCG-5'\n_____________|__________|\n_____________62_________51\n |
189 -- 195 |
52 -- 58 |
-16.7738 kcal/mol |
1.20687 kcal/mol |
2.88813 kcal/mol |
185 196@LB@ | |@LB@5'-CUG...AGAAA UGCUA...UUU-3'@LB@ ACUGGAAGCA@LB@ ||||||||||@LB@ UGACCUUCGU@LB@3'-UUU...CAUUA UACAC...GCG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -16.7738 kcal/mol@LB@Unfolding Energy - mRNA 1.20687 kcal/mol@LB@Unfolding Energy - sRNA 2.88813 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
171 |
0.02102 |
0.4072 |
b1747 |
astA |
-10.86 |
0.137376 |
74 -- 103 |
34 -- 65 |
arginine succinyltransferase |
|
_____________73_______________________________104\n_____________|________________________________|\n5'-GGC...CGUGA________AUU_____________C__G____GUUUU...AAG-3'\n______________UGGUACUG___GCGG_GUG_GCAA_GU_GUGC\n______________|::|||||___||::_|||_||||_||_||||\n______________AUUAUGAC___CGUU_CAC_CGUU_CA_CACG\n3'-UUU...GAUUC________CUU____A___U____A__G____AAAGU...GCG-5'\n_____________|________________________________|\n_____________66_______________________________33\n |
75 -- 81 |
58 -- 64 |
-29.9398 kcal/mol |
12.3081 kcal/mol |
6.77229 kcal/mol |
73 104@LB@ | |@LB@5'-GGC...CGUGA AUU C G GUUUU...AAG-3'@LB@ UGGUACUG GCGG GUG GCAA GU GUGC@LB@ |::||||| ||:: ||| |||| || ||||@LB@ AUUAUGAC CGUU CAC CGUU CA CACG@LB@3'-UUU...GAUUC CUU A U A G AAAGU...GCG-5'@LB@ | |@LB@ 66 33@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -29.9398 kcal/mol@LB@Unfolding Energy - mRNA 12.3081 kcal/mol@LB@Unfolding Energy - sRNA 6.77229 kcal/mol@LB@@LB@Position - mRNA 74 -- 103@LB@Position - sRNA 34 -- 65@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 58 -- 64@LB@ |
172 |
0.02103 |
0.4072 |
b2043 |
wcaM |
-13.25 |
0.055075 |
7 -- 38 |
49 -- 84 |
colanic acid biosynthesis protein |
|
_____________6_____________________________________39\n_____________|_____________________________________|\n_____5'-GGCUGA__A__________________C_____A_________CUCGC...AAA-3'\n______________CA__AUCCGGCUGGCU_GGUG___CUG_GAA_CGAUG\n______________||__|:||||||||||_:||:___|||_|||_|:|||\n______________GU__UGGGCCGACCGA_UCAU___GAC_CUU_GUUAC\n_____3'-UUUUCG__CG____________U____UAU_______C_____ACUCG...GCG-5'\n_____________|_____________________________________|\n_____________85____________________________________48\n |
15 -- 21 |
69 -- 75 |
-36.8983 kcal/mol |
9.08712 kcal/mol |
14.5597 kcal/mol |
6 39@LB@ | |@LB@ 5'-GGCUGA A C A CUCGC...AAA-3'@LB@ CA AUCCGGCUGGCU GGUG CUG GAA CGAUG@LB@ || |:|||||||||| :||: ||| ||| |:|||@LB@ GU UGGGCCGACCGA UCAU GAC CUU GUUAC@LB@ 3'-UUUUCG CG U UAU C ACUCG...GCG-5'@LB@ | |@LB@ 85 48@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -36.8983 kcal/mol@LB@Unfolding Energy - mRNA 9.08712 kcal/mol@LB@Unfolding Energy - sRNA 14.5597 kcal/mol@LB@@LB@Position - mRNA 7 -- 38@LB@Position - sRNA 49 -- 84@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 69 -- 75@LB@ |
173 |
0.02105 |
0.4072 |
b2840 |
ygeA |
-11.88 |
0.093670 |
213 -- 233 |
44 -- 67 |
Asp/Glu_racemase family protein |
|
_____________212______________________234\n_____________|________________________|\n5'-AAA...CAAUU___U__________G_________UGGGA...UUC-3'\n______________GGU__UGCUGGGAG_AA__UGAGC\n______________:||__|:||||:||_||__|||||\n______________UCA__AUGACCUUC_UU__ACUCG\n3'-UUU...CCGAU___UU_________G__AC_____UUACA...GCG-5'\n_____________|________________________|\n_____________68_______________________43\n |
219 -- 225 |
54 -- 60 |
-22.3324 kcal/mol |
7.15309 kcal/mol |
3.30407 kcal/mol |
212 234@LB@ | |@LB@5'-AAA...CAAUU U G UGGGA...UUC-3'@LB@ GGU UGCUGGGAG AA UGAGC@LB@ :|| |:||||:|| || |||||@LB@ UCA AUGACCUUC UU ACUCG@LB@3'-UUU...CCGAU UU G AC UUACA...GCG-5'@LB@ | |@LB@ 68 43@LB@@LB@@LB@Energy -11.88 kcal/mol@LB@Hybridization Energy -22.3324 kcal/mol@LB@Unfolding Energy - mRNA 7.15309 kcal/mol@LB@Unfolding Energy - sRNA 3.30407 kcal/mol@LB@@LB@Position - mRNA 213 -- 233@LB@Position - sRNA 44 -- 67@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 54 -- 60@LB@ |
174 |
0.02116 |
0.4072 |
b3081 |
fadH |
-11.31 |
0.116093 |
186 -- 215 |
37 -- 63 |
2 4-dienoyl-CoA reductase NADH and FMN-linked |
|
_____________185______________________________216\n_____________|________________________________|\n5'-UGG...UUUAC______________UUUA_____UACCC____CUGUU...ACC-3'\n______________AUACUGGA__CAAU____UGAGC_____GUCG\n______________||||||||__||||____|||||_____||||\n______________UAUGACCU__GUUA____ACUCG_____CAGC\n3'-UUU...UUCAU________UC____C________UUA______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
187 -- 193 |
56 -- 62 |
-21.1868 kcal/mol |
6.57497 kcal/mol |
3.30267 kcal/mol |
185 216@LB@ | |@LB@5'-UGG...UUUAC UUUA UACCC CUGUU...ACC-3'@LB@ AUACUGGA CAAU UGAGC GUCG@LB@ |||||||| |||| ||||| ||||@LB@ UAUGACCU GUUA ACUCG CAGC@LB@3'-UUU...UUCAU UC C UUA ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -21.1868 kcal/mol@LB@Unfolding Energy - mRNA 6.57497 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 186 -- 215@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 56 -- 62@LB@ |
175 |
0.02121 |
0.4072 |
b4592 |
cbdX |
-9.01 |
0.266875 |
56 -- 82 |
33 -- 61 |
putative cytochrome bd-II oxidase subunit |
|
_____________55______________________________83\n_____________|_______________________________|\n5'-GCG...CUGAC__________UU____U______________GAUAU...CGU-3'\n______________GCUG__AGCA__AUGU_GGUAA__UCGUGCU\n______________:|||__||||__||||_:|:||__|||||||\n______________UGAC__UCGU__UACA_UCGUU__AGCACGA\n3'-UUU...CAUUA____CU__________C_____AC_______AAGUC...GCG-5'\n_____________|_______________________________|\n_____________62______________________________32\n |
76 -- 82 |
33 -- 39 |
-24.6928 kcal/mol |
8.91736 kcal/mol |
6.76812 kcal/mol |
55 83@LB@ | |@LB@5'-GCG...CUGAC UU U GAUAU...CGU-3'@LB@ GCUG AGCA AUGU GGUAA UCGUGCU@LB@ :||| |||| |||| :|:|| |||||||@LB@ UGAC UCGU UACA UCGUU AGCACGA@LB@3'-UUU...CAUUA CU C AC AAGUC...GCG-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -24.6928 kcal/mol@LB@Unfolding Energy - mRNA 8.91736 kcal/mol@LB@Unfolding Energy - sRNA 6.76812 kcal/mol@LB@@LB@Position - mRNA 56 -- 82@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 33 -- 39@LB@ |
176 |
0.02184 |
0.4113 |
b0153 |
fhuB |
-8.75 |
0.291577 |
190 -- 208 |
42 -- 58 |
iron(3+)-hydroxamate import ABC transporter permease |
|
_____________189_________________209\n_____________|___________________|\n5'-UAU...CCAUC________AGC________ACGAA...CGC-3'\n______________GGAGGUAA___GUGAGUAA\n______________|||:|:||___|||||:||\n______________CCUUCGUU___CACUCGUU\n3'-UUU...UAUGA________A__________ACAGC...GCG-5'\n_____________|___________________|\n_____________59__________________41\n |
202 -- 208 |
42 -- 48 |
-20.4106 kcal/mol |
8.45448 kcal/mol |
3.2101 kcal/mol |
189 209@LB@ | |@LB@5'-UAU...CCAUC AGC ACGAA...CGC-3'@LB@ GGAGGUAA GUGAGUAA@LB@ |||:|:|| |||||:||@LB@ CCUUCGUU CACUCGUU@LB@3'-UUU...UAUGA A ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -20.4106 kcal/mol@LB@Unfolding Energy - mRNA 8.45448 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 190 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
177 |
0.02193 |
0.4113 |
b4136 |
dsbD |
-10.49 |
0.157561 |
37 -- 60 |
42 -- 62 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________36_______________________61\n_____________|________________________|\n5'-UGC...UCUAU_______AA_____GCUG______GAAUA...CGG-3'\n______________UACUGGG__GGUAA____GAGCAA\n______________||||||:__:|:||____||||||\n______________AUGACCU__UCGUU____CUCGUU\n3'-UUU...UCAUU______________ACA_______ACAGC...GCG-5'\n_____________|________________________|\n_____________63_______________________41\n |
37 -- 43 |
56 -- 62 |
-20.3754 kcal/mol |
6.58529 kcal/mol |
3.30151 kcal/mol |
36 61@LB@ | |@LB@5'-UGC...UCUAU AA GCUG GAAUA...CGG-3'@LB@ UACUGGG GGUAA GAGCAA@LB@ ||||||: :|:|| ||||||@LB@ AUGACCU UCGUU CUCGUU@LB@3'-UUU...UCAUU ACA ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -20.3754 kcal/mol@LB@Unfolding Energy - mRNA 6.58529 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 37 -- 60@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 56 -- 62@LB@ |
178 |
0.02201 |
0.4113 |
b4176 |
yjeT |
-16.79 |
0.013635 |
217 -- 249 |
54 -- 87 |
DUF2065 family protein |
|
_____________216_________________________________250\n_____________|___________________________________|\n5'-UCA...AAUCU____________CC______U______________GUUUA...CGA-3'\n______________GGCUGGCGCUUG__CUGGUU___UGGUACUGGAAG\n______________:||::||:|::|__||||:|___|::|||||||||\n______________UCGGUCGUGGGC__GACCGA___AUUAUGACCUUC\n________3'-UUU____________C_______UUC____________GUUAC...GCG-5'\n_____________|___________________________________|\n_____________88__________________________________53\n |
243 -- 249 |
54 -- 60 |
-41.1583 kcal/mol |
10.0538 kcal/mol |
14.3172 kcal/mol |
216 250@LB@ | |@LB@5'-UCA...AAUCU CC U GUUUA...CGA-3'@LB@ GGCUGGCGCUUG CUGGUU UGGUACUGGAAG@LB@ :||::||:|::| ||||:| |::|||||||||@LB@ UCGGUCGUGGGC GACCGA AUUAUGACCUUC@LB@ 3'-UUU C UUC GUUAC...GCG-5'@LB@ | |@LB@ 88 53@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -41.1583 kcal/mol@LB@Unfolding Energy - mRNA 10.0538 kcal/mol@LB@Unfolding Energy - sRNA 14.3172 kcal/mol@LB@@LB@Position - mRNA 217 -- 249@LB@Position - sRNA 54 -- 87@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 54 -- 60@LB@ |
179 |
0.02212 |
0.4113 |
b3317 |
rplB |
-11.24 |
0.118994 |
191 -- 218 |
39 -- 68 |
50S ribosomal subunit protein L2 |
|
_____________190____________________________219\n_____________|______________________________|\n5'-GCA...CGGAG_________AAU__________UUA_____AAACC...UGC-3'\n______________GAGUAAUAC____GGCAGU_UG___AAUGU\n______________:||||||||____:|||:|_||___|||||\n______________UUCAUUAUG____UCGUUA_AC___UUACA\n3'-UUU...ACCGA_________ACCU______C__UCG_____GCACG...GCG-5'\n_____________|______________________________|\n_____________69_____________________________38\n |
193 -- 199 |
60 -- 66 |
-19.7264 kcal/mol |
5.17772 kcal/mol |
3.30515 kcal/mol |
190 219@LB@ | |@LB@5'-GCA...CGGAG AAU UUA AAACC...UGC-3'@LB@ GAGUAAUAC GGCAGU UG AAUGU@LB@ :|||||||| :|||:| || |||||@LB@ UUCAUUAUG UCGUUA AC UUACA@LB@3'-UUU...ACCGA ACCU C UCG GCACG...GCG-5'@LB@ | |@LB@ 69 38@LB@@LB@@LB@Energy -11.24 kcal/mol@LB@Hybridization Energy -19.7264 kcal/mol@LB@Unfolding Energy - mRNA 5.17772 kcal/mol@LB@Unfolding Energy - sRNA 3.30515 kcal/mol@LB@@LB@Position - mRNA 191 -- 218@LB@Position - sRNA 39 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 60 -- 66@LB@ |
180 |
0.02216 |
0.4113 |
b4123 |
dcuB |
-12.05 |
0.087474 |
186 -- 195 |
12 -- 21 |
C4-dicarboxylate transporter anaerobic; DcuS co-sensor |
|
_____________185________196\n_____________|__________|\n5'-UCU...AUUAU__________CACAC...UGG-3'\n______________CGCGAGGGUU\n______________|||||||||:\n______________GCGCUCCCAG\n3'-UUU...AAGAG__________AAGGA...GCG-5'\n_____________|__________|\n_____________22_________11\n |
189 -- 195 |
12 -- 18 |
-19.9032 kcal/mol |
3.47865 kcal/mol |
4.37028 kcal/mol |
185 196@LB@ | |@LB@5'-UCU...AUUAU CACAC...UGG-3'@LB@ CGCGAGGGUU@LB@ |||||||||:@LB@ GCGCUCCCAG@LB@3'-UUU...AAGAG AAGGA...GCG-5'@LB@ | |@LB@ 22 11@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -19.9032 kcal/mol@LB@Unfolding Energy - mRNA 3.47865 kcal/mol@LB@Unfolding Energy - sRNA 4.37028 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 12 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
181 |
0.0223 |
0.4113 |
b3770 |
ilvE |
-12.64 |
0.069830 |
250 -- 281 |
37 -- 61 |
branched-chain amino acid aminotransferase |
|
_____________249______________________________282\n_____________|________________________________|\n5'-UUU...GGUUC_______AGAC____AG___CAU_________CACGC...GCA-3'\n______________GCUGGGA____GCGA__GUG___GUGAUGUCG\n______________:||||:|____||:|__|||___|::||||||\n______________UGACCUU____CGUU__CAC___CGUUACAGC\n3'-UUU...CAUUA_______________A____U___________ACGAA...GCG-5'\n_____________|________________________________|\n_____________62_______________________________36\n |
275 -- 281 |
37 -- 43 |
-25.0056 kcal/mol |
9.06403 kcal/mol |
3.30158 kcal/mol |
249 282@LB@ | |@LB@5'-UUU...GGUUC AGAC AG CAU CACGC...GCA-3'@LB@ GCUGGGA GCGA GUG GUGAUGUCG@LB@ :||||:| ||:| ||| |::||||||@LB@ UGACCUU CGUU CAC CGUUACAGC@LB@3'-UUU...CAUUA A U ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -12.64 kcal/mol@LB@Hybridization Energy -25.0056 kcal/mol@LB@Unfolding Energy - mRNA 9.06403 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 250 -- 281@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 37 -- 43@LB@ |
182 |
0.02236 |
0.4113 |
b2206 |
napA |
-12.10 |
0.085901 |
76 -- 101 |
42 -- 66 |
nitrate reductase periplasmic large subunit |
|
_____________75_________________________102\n_____________|__________________________|\n5'-GAC...UGAUU______G_________AAGAC_____AACGC...UUG-3'\n______________GUGGUG_UGGAAGCAG_____AGCGA\n______________||::|:_||||||||:_____|||:|\n______________CAUUAU_ACCUUCGUU_____UCGUU\n3'-UUU...CGAUU______G_________ACAC______ACAGC...GCG-5'\n_____________|__________________________|\n_____________67_________________________41\n |
85 -- 91 |
51 -- 57 |
-24.6932 kcal/mol |
9.28668 kcal/mol |
3.30477 kcal/mol |
75 102@LB@ | |@LB@5'-GAC...UGAUU G AAGAC AACGC...UUG-3'@LB@ GUGGUG UGGAAGCAG AGCGA@LB@ ||::|: ||||||||: |||:|@LB@ CAUUAU ACCUUCGUU UCGUU@LB@3'-UUU...CGAUU G ACAC ACAGC...GCG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -24.6932 kcal/mol@LB@Unfolding Energy - mRNA 9.28668 kcal/mol@LB@Unfolding Energy - sRNA 3.30477 kcal/mol@LB@@LB@Position - mRNA 76 -- 101@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 51 -- 57@LB@ |
183 |
0.02251 |
0.4113 |
b4067 |
actP |
-16.98 |
0.012652 |
22 -- 44 |
66 -- 86 |
acetate transporter |
|
_____________21______________________45\n_____________|_______________________|\n5'-AUC...UGAUC___UUC_________________CACGC...GGC-3'\n______________GCC___GCGCCCGGCUGGCUGGG\n______________|||___||:|||||||||||::|\n______________CGG___CGUGGGCCGACCGAUUC\n_______3'-UUUU___U___________________AUUAU...GCG-5'\n_____________|_______________________|\n_____________87______________________65\n |
38 -- 44 |
66 -- 72 |
-41.8503 kcal/mol |
13.121 kcal/mol |
11.7541 kcal/mol |
21 45@LB@ | |@LB@5'-AUC...UGAUC UUC CACGC...GGC-3'@LB@ GCC GCGCCCGGCUGGCUGGG@LB@ ||| ||:|||||||||||::|@LB@ CGG CGUGGGCCGACCGAUUC@LB@ 3'-UUUU U AUUAU...GCG-5'@LB@ | |@LB@ 87 65@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -41.8503 kcal/mol@LB@Unfolding Energy - mRNA 13.121 kcal/mol@LB@Unfolding Energy - sRNA 11.7541 kcal/mol@LB@@LB@Position - mRNA 22 -- 44@LB@Position - sRNA 66 -- 86@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 66 -- 72@LB@ |
184 |
0.02284 |
0.4113 |
b2512 |
bamB |
-14.63 |
0.032048 |
112 -- 136 |
38 -- 58 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________111_______________________137\n_____________|_________________________|\n5'-GCU...GCAUG________GC____AAA________ACUCC...CCC-3'\n______________GGAAGCAG__GUGA___GCGAUGUU\n______________|||||||:__||||___||:||||:\n______________CCUUCGUU__CACU___CGUUACAG\n3'-UUU...UAUGA________A________________CACGA...GCG-5'\n_____________|_________________________|\n_____________59________________________37\n |
130 -- 136 |
38 -- 44 |
-25.7462 kcal/mol |
7.89766 kcal/mol |
3.21639 kcal/mol |
111 137@LB@ | |@LB@5'-GCU...GCAUG GC AAA ACUCC...CCC-3'@LB@ GGAAGCAG GUGA GCGAUGUU@LB@ |||||||: |||| ||:||||:@LB@ CCUUCGUU CACU CGUUACAG@LB@3'-UUU...UAUGA A CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.63 kcal/mol@LB@Hybridization Energy -25.7462 kcal/mol@LB@Unfolding Energy - mRNA 7.89766 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 112 -- 136@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 38 -- 44@LB@ |
185 |
0.02285 |
0.4113 |
b0920 |
elyC |
-11.60 |
0.104081 |
77 -- 89 |
66 -- 78 |
envelope biogenesis factor; DUF218 superfamily protein |
|
_____________76____________90\n_____________|_____________|\n5'-UUG...CUCCA_____________ACGUU...GCC-3'\n______________CCGGUUGGCUAAG\n______________||||:||||||||\n______________GGCCGACCGAUUC\n3'-UUU...UCGUG_____________AUUAU...GCG-5'\n_____________|_____________|\n_____________79____________65\n |
83 -- 89 |
66 -- 72 |
-24.3939 kcal/mol |
5.56302 kcal/mol |
7.23276 kcal/mol |
76 90@LB@ | |@LB@5'-UUG...CUCCA ACGUU...GCC-3'@LB@ CCGGUUGGCUAAG@LB@ ||||:||||||||@LB@ GGCCGACCGAUUC@LB@3'-UUU...UCGUG AUUAU...GCG-5'@LB@ | |@LB@ 79 65@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -24.3939 kcal/mol@LB@Unfolding Energy - mRNA 5.56302 kcal/mol@LB@Unfolding Energy - sRNA 7.23276 kcal/mol@LB@@LB@Position - mRNA 77 -- 89@LB@Position - sRNA 66 -- 78@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 66 -- 72@LB@ |
186 |
0.02299 |
0.4113 |
b3996 |
nudC |
-11.58 |
0.104830 |
175 -- 203 |
40 -- 67 |
NADH pyrophosphatase |
|
_____________174____________________________204\n_____________|______________________________|\n5'-GAU...AUGCC________AA_________CAA____U___GAUCG...CGG-3'\n______________AGUGAUGC___AGGUAGUG___GAGC_AUG\n______________|||:||:|___|:|:|:||___||||_|||\n______________UCAUUAUG___UUCGUUAC___CUCG_UAC\n3'-UUU...CCGAU________ACC________A______U___AGCAC...GCG-5'\n_____________|______________________________|\n_____________68_____________________________39\n |
186 -- 192 |
49 -- 55 |
-21.6638 kcal/mol |
6.77954 kcal/mol |
3.30504 kcal/mol |
174 204@LB@ | |@LB@5'-GAU...AUGCC AA CAA U GAUCG...CGG-3'@LB@ AGUGAUGC AGGUAGUG GAGC AUG@LB@ |||:||:| |:|:|:|| |||| |||@LB@ UCAUUAUG UUCGUUAC CUCG UAC@LB@3'-UUU...CCGAU ACC A U AGCAC...GCG-5'@LB@ | |@LB@ 68 39@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -21.6638 kcal/mol@LB@Unfolding Energy - mRNA 6.77954 kcal/mol@LB@Unfolding Energy - sRNA 3.30504 kcal/mol@LB@@LB@Position - mRNA 175 -- 203@LB@Position - sRNA 40 -- 67@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 49 -- 55@LB@ |
187 |
0.023 |
0.4113 |
b2311 |
ubiX |
-11.39 |
0.112499 |
264 -- 277 |
17 -- 30 |
3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
|
_____________263____________278\n_____________|______________|\n5'-UGA...UAUUA________G_____UGUCA...AUC-3'\n______________CAGGUUCU_CGCGA\n______________||||||||_|||||\n______________GUCCAAGA_GCGCU\n3'-UUU...CGAAA________G_____CCCAG...GCG-5'\n_____________|______________|\n_____________31_____________16\n |
265 -- 271 |
23 -- 29 |
-23.8621 kcal/mol |
5.17919 kcal/mol |
7.29042 kcal/mol |
263 278@LB@ | |@LB@5'-UGA...UAUUA G UGUCA...AUC-3'@LB@ CAGGUUCU CGCGA@LB@ |||||||| |||||@LB@ GUCCAAGA GCGCU@LB@3'-UUU...CGAAA G CCCAG...GCG-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -23.8621 kcal/mol@LB@Unfolding Energy - mRNA 5.17919 kcal/mol@LB@Unfolding Energy - sRNA 7.29042 kcal/mol@LB@@LB@Position - mRNA 264 -- 277@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 23 -- 29@LB@ |
188 |
0.02302 |
0.4113 |
b3105 |
yhaJ |
-12.66 |
0.069284 |
224 -- 245 |
40 -- 61 |
LysR family putative transcriptional regulator |
|
_____________223____________________246\n_____________|______________________|\n5'-CGG...UUAAC__________CUAC____U___GAUGC...GCG-3'\n______________GCUGGAAGCA____GGGU_AUG\n______________:|||||||||____|:|:_|||\n______________UGACCUUCGU____CUCG_UAC\n3'-UUU...CAUUA__________UACA____U___AGCAC...GCG-5'\n_____________|______________________|\n_____________62_____________________39\n |
227 -- 233 |
52 -- 58 |
-21.8067 kcal/mol |
5.84576 kcal/mol |
3.30075 kcal/mol |
223 246@LB@ | |@LB@5'-CGG...UUAAC CUAC U GAUGC...GCG-3'@LB@ GCUGGAAGCA GGGU AUG@LB@ :||||||||| |:|: |||@LB@ UGACCUUCGU CUCG UAC@LB@3'-UUU...CAUUA UACA U AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -12.66 kcal/mol@LB@Hybridization Energy -21.8067 kcal/mol@LB@Unfolding Energy - mRNA 5.84576 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 224 -- 245@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 52 -- 58@LB@ |
189 |
0.02313 |
0.4113 |
b2438 |
eutK |
-12.08 |
0.086588 |
220 -- 243 |
37 -- 62 |
putative ethanol utilization carboxysome structural protein |
|
_____________219________________________244\n_____________|__________________________|\n5'-CGA...GGGAU____________AC______UG____CCGCG...GUC-3'\n______________UGCUGGAAGUGG____GGCA__GUCG\n______________|:|||||||:::____:|||__||||\n______________AUGACCUUCGUU____UCGU__CAGC\n3'-UUU...UCAUU____________ACAC____UA____ACGAA...GCG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
224 -- 230 |
52 -- 58 |
-25.7957 kcal/mol |
10.4122 kcal/mol |
3.3026 kcal/mol |
219 244@LB@ | |@LB@5'-CGA...GGGAU AC UG CCGCG...GUC-3'@LB@ UGCUGGAAGUGG GGCA GUCG@LB@ |:|||||||::: :||| ||||@LB@ AUGACCUUCGUU UCGU CAGC@LB@3'-UUU...UCAUU ACAC UA ACGAA...GCG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -25.7957 kcal/mol@LB@Unfolding Energy - mRNA 10.4122 kcal/mol@LB@Unfolding Energy - sRNA 3.3026 kcal/mol@LB@@LB@Position - mRNA 220 -- 243@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 52 -- 58@LB@ |
190 |
0.02395 |
0.4226 |
b1189 |
dadA |
-13.37 |
0.052568 |
210 -- 233 |
43 -- 66 |
D-amino acid dehydrogenase |
|
_____________209_______________________234\n_____________|_________________________|\n5'-CCG...GAGUU__C_____G________________GGCGU...CGG-3'\n______________GU_AUACU_GGAAGUGGUGUG_GUA\n______________||_|||||_|||||:::||||_|:|\n______________CA_UAUGA_CCUUCGUUACAC_CGU\n3'-UUU...CGAUU__U__________________U___UACAG...GCG-5'\n_____________|_________________________|\n_____________67________________________42\n |
219 -- 225 |
52 -- 58 |
-24.725 kcal/mol |
8.04945 kcal/mol |
3.30463 kcal/mol |
209 234@LB@ | |@LB@5'-CCG...GAGUU C G GGCGU...CGG-3'@LB@ GU AUACU GGAAGUGGUGUG GUA@LB@ || ||||| |||||:::|||| |:|@LB@ CA UAUGA CCUUCGUUACAC CGU@LB@3'-UUU...CGAUU U U UACAG...GCG-5'@LB@ | |@LB@ 67 42@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -24.725 kcal/mol@LB@Unfolding Energy - mRNA 8.04945 kcal/mol@LB@Unfolding Energy - sRNA 3.30463 kcal/mol@LB@@LB@Position - mRNA 210 -- 233@LB@Position - sRNA 43 -- 66@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 52 -- 58@LB@ |
191 |
0.0243 |
0.4226 |
b4511 |
ybdZ |
-10.65 |
0.148355 |
2 -- 30 |
16 -- 45 |
stimulator of EntF adenylation activity MbtH-like |
|
_____________1_________________________________31\n_____________|_________________________________|\n__________5'-C_____________GGAAG_____A_________CCGAU...UAC-3'\n______________GCA___UUGUGCU_____CGGGU__UUCGCGAG\n______________|||___|:|||||_____|:|||__|:||||||\n______________CGU___AGCACGA_____GUCCA__AGGCGCUC\n3'-UUU...ACACU___UAC_______AA________AG________CCAGA...GCG-5'\n_____________|_________________________________|\n_____________46________________________________15\n |
24 -- 30 |
16 -- 22 |
-30.8687 kcal/mol |
10.0459 kcal/mol |
10.1709 kcal/mol |
1 31@LB@ | |@LB@ 5'-C GGAAG A CCGAU...UAC-3'@LB@ GCA UUGUGCU CGGGU UUCGCGAG@LB@ ||| |:||||| |:||| |:||||||@LB@ CGU AGCACGA GUCCA AGGCGCUC@LB@3'-UUU...ACACU UAC AA AG CCAGA...GCG-5'@LB@ | |@LB@ 46 15@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -30.8687 kcal/mol@LB@Unfolding Energy - mRNA 10.0459 kcal/mol@LB@Unfolding Energy - sRNA 10.1709 kcal/mol@LB@@LB@Position - mRNA 2 -- 30@LB@Position - sRNA 16 -- 45@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 16 -- 22@LB@ |
192 |
0.02457 |
0.4226 |
b2689 |
yqaA |
-16.30 |
0.016522 |
258 -- 300 |
44 -- 85 |
COG1238 family inner membrane protein |
|
_____________257_________________________________________300\n_____________|___________________________________________|\n5'-CAC...CUACA___U________AACUCCG____C_______U________U___-3'\n______________CUA_UACCCGGC_______AAGU_GUGCUGG_GGCAAUGU__GC\n______________|:|_:|||||||_______||||_:|:||||_:|||||||__||\n______________GGU_GUGGGCCG_______UUCA_UAUGACC_UCGUUACA__CG\n______3'-UUUUC___C________ACCGA______U_______U________CU__UUACA...GCG-5'\n_____________|____________________________________________|\n_____________86___________________________________________43\n |
291 -- 297 |
48 -- 54 |
-43.3701 kcal/mol |
12.1561 kcal/mol |
14.9093 kcal/mol |
257 300@LB@ | |@LB@5'-CAC...CUACA U AACUCCG C U U -3'@LB@ CUA UACCCGGC AAGU GUGCUGG GGCAAUGU GC@LB@ |:| :||||||| |||| :|:|||| :||||||| ||@LB@ GGU GUGGGCCG UUCA UAUGACC UCGUUACA CG@LB@ 3'-UUUUC C ACCGA U U CU UUACA...GCG-5'@LB@ | |@LB@ 86 43@LB@@LB@@LB@Energy -16.30 kcal/mol@LB@Hybridization Energy -43.3701 kcal/mol@LB@Unfolding Energy - mRNA 12.1561 kcal/mol@LB@Unfolding Energy - sRNA 14.9093 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 44 -- 85@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 48 -- 54@LB@ |
193 |
0.02468 |
0.4226 |
b0642 |
leuS |
-10.30 |
0.169116 |
191 -- 213 |
41 -- 61 |
leucyl-tRNA synthetase |
|
_____________190_____________________214\n_____________|_______________________|\n5'-AAU...GGACC_____CU__C___CAA_______ACCGC...AGA-3'\n______________ACUGG__GC_AUG___GAGCAAU\n______________|||||__||_|||___|||||||\n______________UGACC__CG_UAC___CUCGUUA\n3'-UUU...CAUUA_____UU__U___A_________CAGCA...GCG-5'\n_____________|_______________________|\n_____________62______________________40\n |
207 -- 213 |
41 -- 47 |
-20.8037 kcal/mol |
7.20782 kcal/mol |
3.30062 kcal/mol |
190 214@LB@ | |@LB@5'-AAU...GGACC CU C CAA ACCGC...AGA-3'@LB@ ACUGG GC AUG GAGCAAU@LB@ ||||| || ||| |||||||@LB@ UGACC CG UAC CUCGUUA@LB@3'-UUU...CAUUA UU U A CAGCA...GCG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -20.8037 kcal/mol@LB@Unfolding Energy - mRNA 7.20782 kcal/mol@LB@Unfolding Energy - sRNA 3.30062 kcal/mol@LB@@LB@Position - mRNA 191 -- 213@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 41 -- 47@LB@ |
194 |
0.02479 |
0.4226 |
b1260 |
trpA |
-8.29 |
0.338830 |
290 -- 297 |
41 -- 48 |
tryptophan synthase alpha subunit |
|
_____________289______298\n_____________|________|\n5'-GCC...GGCAU________CAU-3'\n______________UGAGCAGU\n______________||||||:|\n______________ACUCGUUA\n3'-UUU...GUUAC________CAGCA...GCG-5'\n_____________|________|\n_____________49_______40\n |
291 -- 297 |
41 -- 47 |
-10.1831 kcal/mol |
0.772851 kcal/mol |
1.11967 kcal/mol |
289 298@LB@ | |@LB@5'-GCC...GGCAU CAU-3'@LB@ UGAGCAGU@LB@ ||||||:|@LB@ ACUCGUUA@LB@3'-UUU...GUUAC CAGCA...GCG-5'@LB@ | |@LB@ 49 40@LB@@LB@@LB@Energy -8.29 kcal/mol@LB@Hybridization Energy -10.1831 kcal/mol@LB@Unfolding Energy - mRNA 0.772851 kcal/mol@LB@Unfolding Energy - sRNA 1.11967 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 41 -- 48@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 41 -- 47@LB@ |
195 |
0.0249 |
0.4226 |
b1476 |
fdnI |
-9.91 |
0.194140 |
190 -- 212 |
37 -- 58 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________189______________________213\n_____________|________________________|\n5'-CGU...GACGA_____AU__UCA____________AAAAU...UUU-3'\n______________GGAGG__CA___UGAGUAA_GUCG\n______________|||:|__||___||||:||_||||\n______________CCUUC__GU___ACUCGUU_CAGC\n3'-UUU...UAUGA_________UAC_______A____ACGAA...GCG-5'\n_____________|________________________|\n_____________59_______________________36\n |
202 -- 208 |
42 -- 48 |
-19.5397 kcal/mol |
6.39857 kcal/mol |
3.22699 kcal/mol |
189 213@LB@ | |@LB@5'-CGU...GACGA AU UCA AAAAU...UUU-3'@LB@ GGAGG CA UGAGUAA GUCG@LB@ |||:| || ||||:|| ||||@LB@ CCUUC GU ACUCGUU CAGC@LB@3'-UUU...UAUGA UAC A ACGAA...GCG-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -19.5397 kcal/mol@LB@Unfolding Energy - mRNA 6.39857 kcal/mol@LB@Unfolding Energy - sRNA 3.22699 kcal/mol@LB@@LB@Position - mRNA 190 -- 212@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
196 |
0.02499 |
0.4226 |
b3098 |
yqjD |
-9.33 |
0.238834 |
67 -- 86 |
37 -- 57 |
membrane-anchored ribosome-binding protein |
|
_____________66____________________87\n_____________|_____________________|\n5'-UCA...GAGGC_______AAA________C__AUAAG...AAG-3'\n______________GAAGCAA____GGCGAUG_CG\n______________|||||||____:||:|||_||\n______________CUUCGUU____UCGUUAC_GC\n3'-UUU...AUGAC_______ACAC_______A__ACGAA...GCG-5'\n_____________|_____________________|\n_____________58____________________36\n |
77 -- 83 |
40 -- 46 |
-18.4137 kcal/mol |
5.85817 kcal/mol |
3.2267 kcal/mol |
66 87@LB@ | |@LB@5'-UCA...GAGGC AAA C AUAAG...AAG-3'@LB@ GAAGCAA GGCGAUG CG@LB@ ||||||| :||:||| ||@LB@ CUUCGUU UCGUUAC GC@LB@3'-UUU...AUGAC ACAC A ACGAA...GCG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -18.4137 kcal/mol@LB@Unfolding Energy - mRNA 5.85817 kcal/mol@LB@Unfolding Energy - sRNA 3.2267 kcal/mol@LB@@LB@Position - mRNA 67 -- 86@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 40 -- 46@LB@ |
197 |
0.02501 |
0.4226 |
b2947 |
gshB |
-10.62 |
0.150229 |
274 -- 293 |
36 -- 62 |
glutathione synthetase |
|
_____________273_________________________294\n_____________|___________________________|\n5'-UGC...UAUGU_____________________C_____GGUUACG-3'\n______________UGCUGGAAGCA_______CAG_GUCGU\n______________|:|||||||||_______||:_|||||\n______________AUGACCUUCGU_______GUU_CAGCA\n3'-UUU...UCAUU___________UACACUC___A_____CGAAA...GCG-5'\n_____________|___________________________|\n_____________63__________________________35\n |
278 -- 284 |
52 -- 58 |
-23.3786 kcal/mol |
9.45801 kcal/mol |
3.30265 kcal/mol |
273 294@LB@ | |@LB@5'-UGC...UAUGU C GGUUACG-3'@LB@ UGCUGGAAGCA CAG GUCGU@LB@ |:||||||||| ||: |||||@LB@ AUGACCUUCGU GUU CAGCA@LB@3'-UUU...UCAUU UACACUC A CGAAA...GCG-5'@LB@ | |@LB@ 63 35@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -23.3786 kcal/mol@LB@Unfolding Energy - mRNA 9.45801 kcal/mol@LB@Unfolding Energy - sRNA 3.30265 kcal/mol@LB@@LB@Position - mRNA 274 -- 293@LB@Position - sRNA 36 -- 62@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 52 -- 58@LB@ |
198 |
0.02503 |
0.4226 |
b2544 |
yphB |
-11.73 |
0.099011 |
68 -- 80 |
47 -- 61 |
mutarotase superfamily protein YphB family |
|
_____________67______________81\n_____________|_______________|\n5'-CGG...GACGG_______________GCCGC...UAC-3'\n______________ACUGGAAGC__UGUG\n______________|||||||||__||||\n______________UGACCUUCG__ACAC\n3'-UUU...CAUUA_________UU____UCGUU...GCG-5'\n_____________|_______________|\n_____________62______________46\n |
70 -- 76 |
53 -- 59 |
-17.6322 kcal/mol |
2.81046 kcal/mol |
3.09217 kcal/mol |
67 81@LB@ | |@LB@5'-CGG...GACGG GCCGC...UAC-3'@LB@ ACUGGAAGC UGUG@LB@ ||||||||| ||||@LB@ UGACCUUCG ACAC@LB@3'-UUU...CAUUA UU UCGUU...GCG-5'@LB@ | |@LB@ 62 46@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -17.6322 kcal/mol@LB@Unfolding Energy - mRNA 2.81046 kcal/mol@LB@Unfolding Energy - sRNA 3.09217 kcal/mol@LB@@LB@Position - mRNA 68 -- 80@LB@Position - sRNA 47 -- 61@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 53 -- 59@LB@ |
199 |
0.02505 |
0.4226 |
b3794 |
wecG |
-14.56 |
0.032964 |
62 -- 86 |
1 -- 25 |
UDP-N-acetyl-D-mannosaminuronic acid transferase |
|
_____________61_________________________87\n_____________|__________________________|\n5'-UUC...GUUUG____A____U__________U_____GGUCU...ACG-3'\n______________UCUC_CGCG__GGUCUUUUU_AUCGU\n______________||||_||||__||||||::|_||||:\n______________AGAG_GCGC__CCAGAAGGA_UAGCG\n3'-UUU...GUCCA_________UC_________C_____-5'\n_____________|_________________________|\n_____________26________________________1\n |
74 -- 80 |
7 -- 13 |
-28.4933 kcal/mol |
6.21356 kcal/mol |
7.71912 kcal/mol |
61 87@LB@ | |@LB@5'-UUC...GUUUG A U U GGUCU...ACG-3'@LB@ UCUC CGCG GGUCUUUUU AUCGU@LB@ |||| |||| ||||||::| ||||:@LB@ AGAG GCGC CCAGAAGGA UAGCG@LB@3'-UUU...GUCCA UC C -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -28.4933 kcal/mol@LB@Unfolding Energy - mRNA 6.21356 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 62 -- 86@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 7 -- 13@LB@ |
200 |
0.02516 |
0.4226 |
b2566 |
era |
-10.17 |
0.177109 |
195 -- 210 |
37 -- 61 |
membrane-associated 16S rRNA-binding GTPase |
|
_____________194_______________________211\n_____________|_________________________|\n5'-UUG...CUGGA_________________________AUAAA...UCU-3'\n______________GCUGGAA______UGAGCA___UCG\n______________:||||||______||||||___|||\n______________UGACCUU______ACUCGU___AGC\n3'-UUU...CAUUA_______CGUUAC______UAC___ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
195 -- 201 |
55 -- 61 |
-17.979 kcal/mol |
4.50899 kcal/mol |
3.30158 kcal/mol |
194 211@LB@ | |@LB@5'-UUG...CUGGA AUAAA...UCU-3'@LB@ GCUGGAA UGAGCA UCG@LB@ :|||||| |||||| |||@LB@ UGACCUU ACUCGU AGC@LB@3'-UUU...CAUUA CGUUAC UAC ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -17.979 kcal/mol@LB@Unfolding Energy - mRNA 4.50899 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 195 -- 210@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 55 -- 61@LB@ |