10 |
0.0006004 |
0.1842 |
b3656 |
yicI |
-12.42 |
0.091283 |
58 -- 101 |
169 -- 207 |
putative alpha-glucosidase |
|
_____________57_________102\n_____________|__________|\n5'-ACA...GAUAA__________G-3'\n______________UGAAAUGGUG\n______________|:||||:|||\n______________AUUUUAUCAC\n3'-UUU...GCGCC__________GACUA...UAG-5'\n_____________|__________|\n_____________208________168\n |
293 -- 299 |
40 -- 46 |
-9.13222 kcal/mol |
0.486237 kcal/mol |
4.51378 kcal/mol |
57 102@LB@ | |@LB@5'-ACA...GAUAA G-3'@LB@ UGAAAUGGUG@LB@ |:||||:|||@LB@ AUUUUAUCAC@LB@3'-UUU...GCGCC GACUA...UAG-5'@LB@ | |@LB@ 208 168@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -9.13222 kcal/mol@LB@Unfolding Energy - mRNA 0.486237 kcal/mol@LB@Unfolding Energy - sRNA 4.51378 kcal/mol@LB@@LB@Position - mRNA 58 -- 101@LB@Position - sRNA 169 -- 207@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 40 -- 46@LB@ |
8 |
0.0005643 |
0.1842 |
b2557 |
purL |
-10.01 |
0.273478 |
129 -- 143 |
111 -- 124 |
phosphoribosylformyl-glycineamide synthetase |
|
_____________128______________144\n_____________|________________|\n5'-AGG...UUGGG________AA______AAGAC...UUU-3'\n______________UACACCGA__GCUUAG\n______________||||||:|__:||:||\n______________AUGUGGUU__UGAGUC\n3'-UUU...CUAAA________A_______AGUGU...UAG-5'\n_____________|________________|\n_____________125______________110\n |
172 -- 178 |
181 -- 187 |
-14.8421 kcal/mol |
1.97129 kcal/mol |
3.669 kcal/mol |
128 144@LB@ | |@LB@5'-AGG...UUGGG AA AAGAC...UUU-3'@LB@ UACACCGA GCUUAG@LB@ ||||||:| :||:||@LB@ AUGUGGUU UGAGUC@LB@3'-UUU...CUAAA A AGUGU...UAG-5'@LB@ | |@LB@ 125 110@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -14.8421 kcal/mol@LB@Unfolding Energy - mRNA 1.97129 kcal/mol@LB@Unfolding Energy - sRNA 3.669 kcal/mol@LB@@LB@Position - mRNA 129 -- 143@LB@Position - sRNA 111 -- 124@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 181 -- 187@LB@ |
6 |
0.0003621 |
0.1842 |
b3242 |
aaeX |
-9.38 |
0.356280 |
9 -- 19 |
125 -- 135 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________8_________20\n_____________|_________|\n5'-GCG...CAUAA_________UAAUA...GGG-3'\n______________CAGUUACGC\n______________||||:||:|\n______________GUCAGUGUG\n3'-UUU...UAUGA_________UACUA...UAG-5'\n_____________|_________|\n_____________136_______124\n |
75 -- 81 |
168 -- 174 |
-12.5845 kcal/mol |
1.53643 kcal/mol |
0.276974 kcal/mol |
8 20@LB@ | |@LB@5'-GCG...CAUAA UAAUA...GGG-3'@LB@ CAGUUACGC@LB@ ||||:||:|@LB@ GUCAGUGUG@LB@3'-UUU...UAUGA UACUA...UAG-5'@LB@ | |@LB@ 136 124@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -12.5845 kcal/mol@LB@Unfolding Energy - mRNA 1.53643 kcal/mol@LB@Unfolding Energy - sRNA 0.276974 kcal/mol@LB@@LB@Position - mRNA 9 -- 19@LB@Position - sRNA 125 -- 135@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 168 -- 174@LB@ |
16 |
0.0008966 |
0.1886 |
b0807 |
rlmF |
-16.29 |
0.014793 |
117 -- 160 |
51 -- 97 |
23S rRNA m(6)A1618 methyltransferase SAM-dependent |
|
_____________116_____________________________________________161\n_____________|_______________________________________________|\n5'-AUU...UUAAG___U_____AA______A_______________U__A_C________UUAUG...UCC-3'\n______________GUU_UGGGG____UGAU_AACGCAGCCAG_AUA_UU_C_CUGUCGCG\n______________|||_||||:____|:|:_||||||:||||_|:|_:|_|_||||||||\n______________CAA_ACCCU____AUUG_UUGCGUUGGUC_UGU_GA_G_GACAGCGC\n3'-UUU...AUUAG___C_____GCGA____G___________G___U__A_C________CAUUU...UAG-5'\n_____________|_______________________________________________|\n_____________98______________________________________________50\n |
154 -- 160 |
51 -- 57 |
-44.7843 kcal/mol |
10.0752 kcal/mol |
25.3667 kcal/mol |
116 161@LB@ | |@LB@5'-AUU...UUAAG U AA A U A C UUAUG...UCC-3'@LB@ GUU UGGGG UGAU AACGCAGCCAG AUA UU C CUGUCGCG@LB@ ||| ||||: |:|: ||||||:|||| |:| :| | ||||||||@LB@ CAA ACCCU AUUG UUGCGUUGGUC UGU GA G GACAGCGC@LB@3'-UUU...AUUAG C GCGA G G U A C CAUUU...UAG-5'@LB@ | |@LB@ 98 50@LB@@LB@@LB@Energy -16.29 kcal/mol@LB@Hybridization Energy -44.7843 kcal/mol@LB@Unfolding Energy - mRNA 10.0752 kcal/mol@LB@Unfolding Energy - sRNA 25.3667 kcal/mol@LB@@LB@Position - mRNA 117 -- 160@LB@Position - sRNA 51 -- 97@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 51 -- 57@LB@ |
14 |
0.00083 |
0.1886 |
b2721 |
hycE |
-15.91 |
0.017607 |
169 -- 185 |
190 -- 205 |
hydrogenase 3 large subunit |
|
_____________168_______________186\n_____________|_________________|\n5'-UUC...UCUCC__________C______AAAGA...UGA-3'\n______________UUGCUGGCGG_GUGAUU\n______________:|||||||||_||||||\n______________GACGACCGCC_CACUAA\n3'-UUU...UAUUA_________________AAUGU...UAG-5'\n_____________|_________________|\n_____________206_______________189\n |
172 -- 178 |
196 -- 202 |
-26.9802 kcal/mol |
6.4269 kcal/mol |
9.06848 kcal/mol |
168 186@LB@ | |@LB@5'-UUC...UCUCC C AAAGA...UGA-3'@LB@ UUGCUGGCGG GUGAUU@LB@ :||||||||| ||||||@LB@ GACGACCGCC CACUAA@LB@3'-UUU...UAUUA AAUGU...UAG-5'@LB@ | |@LB@ 206 189@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -26.9802 kcal/mol@LB@Unfolding Energy - mRNA 6.4269 kcal/mol@LB@Unfolding Energy - sRNA 9.06848 kcal/mol@LB@@LB@Position - mRNA 169 -- 185@LB@Position - sRNA 190 -- 205@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 196 -- 202@LB@ |
15 |
0.0008498 |
0.1886 |
b4254 |
argI |
-15.11 |
0.025648 |
62 -- 84 |
167 -- 185 |
ornithine carbamoyltransferase 1 |
b0273 |
_____________61______________________85\n_____________|_______________________|\n5'-UUC...GUCCU__________UUAUU________CCACU...AUA-3'\n______________GCCGAUACUC_____GUCACACA\n______________:||:||||||_____||||||||\n______________UGGUUAUGAG_____CAGUGUGU\n3'-UUU...AAAUG__________U____________ACUAC...UAG-5'\n_____________|_______________________|\n_____________186_____________________166\n |
78 -- 84 |
167 -- 173 |
-24.735 kcal/mol |
3.62809 kcal/mol |
5.02083 kcal/mol |
61 85@LB@ | |@LB@5'-UUC...GUCCU UUAUU CCACU...AUA-3'@LB@ GCCGAUACUC GUCACACA@LB@ :||:|||||| ||||||||@LB@ UGGUUAUGAG CAGUGUGU@LB@3'-UUU...AAAUG U ACUAC...UAG-5'@LB@ | |@LB@ 186 166@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -24.735 kcal/mol@LB@Unfolding Energy - mRNA 3.62809 kcal/mol@LB@Unfolding Energy - sRNA 5.02083 kcal/mol@LB@@LB@Position - mRNA 62 -- 84@LB@Position - sRNA 167 -- 185@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 167 -- 173@LB@ |
17 |
0.001014 |
0.2007 |
b4032 |
malG |
-14.09 |
0.041561 |
127 -- 139 |
193 -- 205 |
maltose transporter subunit |
|
_____________126___________140\n_____________|_____________|\n5'-CGU...UCUUC_____________CGCUG...UGG-3'\n______________CUGCUGGUGGGUG\n______________|||||||:|||||\n______________GACGACCGCCCAC\n3'-UUU...UAUUA_____________UAAAA...UAG-5'\n_____________|_____________|\n_____________206___________192\n |
132 -- 138 |
194 -- 200 |
-26.9183 kcal/mol |
7.69341 kcal/mol |
9.06058 kcal/mol |
126 140@LB@ | |@LB@5'-CGU...UCUUC CGCUG...UGG-3'@LB@ CUGCUGGUGGGUG@LB@ |||||||:|||||@LB@ GACGACCGCCCAC@LB@3'-UUU...UAUUA UAAAA...UAG-5'@LB@ | |@LB@ 206 192@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -26.9183 kcal/mol@LB@Unfolding Energy - mRNA 7.69341 kcal/mol@LB@Unfolding Energy - sRNA 9.06058 kcal/mol@LB@@LB@Position - mRNA 127 -- 139@LB@Position - sRNA 193 -- 205@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 194 -- 200@LB@ |
18 |
0.001156 |
0.216 |
b3474 |
yhhT |
-13.05 |
0.067927 |
149 -- 189 |
169 -- 204 |
UPF0118 family putative transporter |
|
_____________148__________________________________________________________________190\n_____________|____________________________________________________________________|\n5'-GAC...GACGU____________UAAG____AGAAUAU________U_ACUCCCGC_____U______AAAA_______AGGAA...UCA-3'\n______________GAAAAUCAGCAG____AAUC_______UGCUGGCG_G________UACAC_UAAUAC____AGUCACA\n______________:||||:||||||____||||_______||||||||_|________|||||_:|||||____|||||||\n______________UUUUUGGUCGUC____UUAG_______ACGACCGC_C________AUGUG_GUUAUG____UCAGUGU\n________3'-UUU____________CAUA_____________________CACUAAA_____________AG_________GUACU...UAG-5'\n_____________|____________________________________________________________________|\n_____________205__________________________________________________________________168\n |
183 -- 189 |
169 -- 175 |
-48.4478 kcal/mol |
16.2259 kcal/mol |
18.3074 kcal/mol |
148 190@LB@ | |@LB@5'-GAC...GACGU UAAG AGAAUAU U ACUCCCGC U AAAA AGGAA...UCA-3'@LB@ GAAAAUCAGCAG AAUC UGCUGGCG G UACAC UAAUAC AGUCACA@LB@ :||||:|||||| |||| |||||||| | ||||| :||||| |||||||@LB@ UUUUUGGUCGUC UUAG ACGACCGC C AUGUG GUUAUG UCAGUGU@LB@ 3'-UUU CAUA CACUAAA AG GUACU...UAG-5'@LB@ | |@LB@ 205 168@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -48.4478 kcal/mol@LB@Unfolding Energy - mRNA 16.2259 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 149 -- 189@LB@Position - sRNA 169 -- 204@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 169 -- 175@LB@ |
24 |
0.001922 |
0.2633 |
b3017 |
ftsP |
-19.79 |
0.002953 |
203 -- 291 |
63 -- 135 |
septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
|
_____________202__________________________________________________________________________________________292\n_____________|____________________________________________________________________________________________|\n5'-GAC...AAUAU_________GUCG__________A_________C__G______CACU_____CA______GUUCCCCUGAAG____________________AGCAA...CGC-3'\n______________GUCA_CUCA____GCGUCAGUUC_UUCAGGCAU_GG__GAUUG____UUGUG__GGCGCU____________GCCAGCGCAGCCGG_GCAAC\n______________||||_|:||____||:|||||:|_||||:||||_||__:||:|____|||||__|:||||____________:|||:||||:||:|_:||||\n______________CAGU_GGGU____CGUAGUCAGG_AAGUUCGUA_CC__UUAGC____AACAC__CUGCGA____________UGGUUGCGUUGGUC_UGUUG\n3'-UUU...AACGC____A____GA_________________________AA______________C_______AU________________________G_____AAGCG...UAG-5'\n_____________|____________________________________________________________________________________________|\n_____________136__________________________________________________________________________________________62\n |
278 -- 284 |
71 -- 77 |
-82.7619 kcal/mol |
32.3928 kcal/mol |
37.2191 kcal/mol |
202 292@LB@ | |@LB@5'-GAC...AAUAU GUCG A C G CACU CA GUUCCCCUGAAG AGCAA...CGC-3'@LB@ GUCA CUCA GCGUCAGUUC UUCAGGCAU GG GAUUG UUGUG GGCGCU GCCAGCGCAGCCGG GCAAC@LB@ |||| |:|| ||:|||||:| ||||:|||| || :||:| ||||| |:|||| :|||:||||:||:| :||||@LB@ CAGU GGGU CGUAGUCAGG AAGUUCGUA CC UUAGC AACAC CUGCGA UGGUUGCGUUGGUC UGUUG@LB@3'-UUU...AACGC A GA AA C AU G AAGCG...UAG-5'@LB@ | |@LB@ 136 62@LB@@LB@@LB@Energy -19.79 kcal/mol@LB@Hybridization Energy -82.7619 kcal/mol@LB@Unfolding Energy - mRNA 32.3928 kcal/mol@LB@Unfolding Energy - sRNA 37.2191 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 63 -- 135@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 71 -- 77@LB@ |
28 |
0.002284 |
0.2633 |
b1114 |
mfd |
-18.81 |
0.004608 |
253 -- 297 |
50 -- 95 |
transcription-repair coupling factor |
|
_____________252______________298\n_____________|________________|\n5'-UUC...GCGUC___U____________CGGCG...AAA-3'\n______________UGC_GGGCGAGUUAAC\n______________|||_:|||:|||:|||\n______________ACG_UCCGUUCAGUUG\n3'-UUU...GUACU________________AAAGU...UAG-5'\n_____________|________________|\n_____________96_______________49\n |
262 -- 268 |
149 -- 155 |
-20.6961 kcal/mol |
4.60584 kcal/mol |
7.12854 kcal/mol |
252 298@LB@ | |@LB@5'-UUC...GCGUC U CGGCG...AAA-3'@LB@ UGC GGGCGAGUUAAC@LB@ ||| :|||:|||:|||@LB@ ACG UCCGUUCAGUUG@LB@3'-UUU...GUACU AAAGU...UAG-5'@LB@ | |@LB@ 96 49@LB@@LB@@LB@Energy -18.81 kcal/mol@LB@Hybridization Energy -20.6961 kcal/mol@LB@Unfolding Energy - mRNA 4.60584 kcal/mol@LB@Unfolding Energy - sRNA 7.12854 kcal/mol@LB@@LB@Position - mRNA 253 -- 297@LB@Position - sRNA 50 -- 95@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 149 -- 155@LB@ |