Input and runtime details for job 5275471 (precomputed example)

Input

	List of genes analyzed		YAP1 WWTR1 TP73 TEAD1 TEAD2 AJUBA MYC PAX3 PAX7 DLX5 DLX6 FOXI1 GBX2 HES1 HES5 MSX1 MSX2 SMAD2 SMAD3 SMAD4 TFAP2A ZIC1 ZIC5
	Minimum number of genes per cluster		5
	Maximum number of genes per cluster		15
	Minimum score to return		1.1

Job ID 5275471 (server version 4.3.0)

	Job Submitted & Queued		@ Mon Aug 08 10:15:17 CEST 2016
	Processing Started		@ Mon Aug 08 10:15:24 CEST 2016
	metaMIR Finished & Post-Processing		@ Mon Aug 08 10:16:28 CEST 2016
	Job Completed		@ Mon Aug 08 10:16:28 CEST 2016

DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=5275471&toolName=metaMIR ( 30 days expiry )

The job description you specified

example2

Output download complete results [zip]

Result table

Sort by selecting a column name

miRNA	Final Score	Positive Combo	Positive Score	Positive Group	Positive List
hsa-miR-499b-5p	1.16	MSX1,PAX7,SMAD3,TP73,YAP1	1.157	5	L07
hsa-miR-498	1.15	MSX1,PAX7,SMAD2,TP73,WWTR1,YAP1	1.145	6	L07
hsa-miR-7113-5p	2.86	MSX2,PAX7,SMAD3,SMAD4,TEAD1,TEAD2,TFAP2A,YAP1	3.481	8	L08
hsa-miR-19b-1-5p	2.56	AJUBA,PAX3,SMAD2,SMAD4,TEAD1,TEAD2,TFAP2A,TP73,WWTR1	3.125	9	L08
hsa-miR-1537-5p	1.64	GBX2,MSX2,SMAD4,TEAD2,TP73,WWTR1	2.562	6	L08
hsa-miR-6887-5p	1.88	AJUBA,MSX2,PAX7,SMAD2,SMAD3,TEAD2,TFAP2A,TP73	2.536	8	L08
hsa-miR-1247-5p	2.23	AJUBA,SMAD2,SMAD4,TEAD2,WWTR1	2.294	5	L08
hsa-miR-3126-3p	1.72	PAX3,SMAD2,SMAD4,TEAD1,TEAD2,TFAP2A,WWTR1	2.088	7	L08
hsa-miR-936	1.48	AJUBA,SMAD2,SMAD3,SMAD4,TEAD1,TEAD2,WWTR1	1.988	7	L08
hsa-miR-23a-5p	1.5	MSX2,SMAD2,TEAD1,TEAD2,TP73,ZIC1	1.911	6	L08

Rows: 1-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100 101-110 111-120 121-130 131-140 141-150 151-160 161-170 171-180 181-190 191-200 201-210 211-220 221-230 231-240 241-250 251-260 261-270 271-280 281-290 291-300 301-310 311-320 321-330 331-340 341-350 351-360 361-370 371-380 381-390 391-400 401-410 411-420 421-426 all

Result table - repPos

Show rows: 1-10 11-20 21-23 all

Sort by selecting a column name

Gene name	Rep
AJUBA	100
GBX2	100
MSX2	100
PAX3	100
PAX7	100
SMAD2	100
SMAD3	100
SMAD4	100
TEAD1	100
TFAP2A	100

Rows: 1-10 11-20 21-23 all

Result table - clusterPos

Show rows: 1-10 11-20 21-30 31-33 all

Sort by selecting a column name

Gene 1	Inter	Gene 2	Norm
AJUBA	pp	GBX2	19
MSX2	pp	MYC	15
PAX3	pp	PAX7	23
SMAD2	pp	SMAD3	23
SMAD4	pp	TEAD1	23
TFAP2A	pp	TP73	21
WWTR1	pp	YAP1	23
ZIC1	pp	AJUBA	21
GBX2	pp	MSX2	20
MYC	pp	PAX3	15

Rows: 1-10 11-20 21-30 31-33 all

Job resubmission

Use the following button if you want to resubmit the job with altered input or parameterization:

usability assessment

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service.

When using metaMIR please cite :

Jason A. Davis, Sita J. Saunders, Martin Mann, Rolf Backofen
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data
Nucleic Acids Research, 2017, 45 (15), 8745–8757.
Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.

Results are computed with metaMIR version 1.0.0 using R 3.2.1

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Input and runtime details for job 5275471 (precomputed example)

Input

Job ID 5275471 (server version 4.3.0)

The job description you specified

Output download complete results [zip]

Result table

Result table - repPos

Result table - clusterPos

Job resubmission

usability assessment

When using metaMIR please cite :