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Input and runtime details for job 5275471 (precomputed example)
Input
Job ID 5275471 (server version 4.3.0)
![]() | Job Submitted & Queued | @ Mon Aug 08 10:15:17 CEST 2016 | |
![]() | Processing Started | @ Mon Aug 08 10:15:24 CEST 2016 | |
![]() | metaMIR Finished & Post-Processing | @ Mon Aug 08 10:16:28 CEST 2016 | |
![]() | Job Completed | @ Mon Aug 08 10:16:28 CEST 2016 |
DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=5275471&toolName=metaMIR ( 30 days expiry )
The job description you specified
example2
Output
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Result table
Show rows: 1-10
11-20
21-30
31-40
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51-60
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Sort by selecting a column name
Rows: 1-10
11-20
21-30
31-40
41-50
51-60
61-70
71-80
81-90
91-100
101-110
111-120
121-130
131-140
141-150
151-160
161-170
171-180
181-190
191-200
201-210
211-220
221-230
231-240
241-250
251-260
261-270
271-280
281-290
291-300
301-310
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331-340
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miRNA | Final Score | Positive Combo | Positive Score | Positive Group | Positive List |
---|---|---|---|---|---|
hsa-miR-624-3p | 1.43 | AJUBA,FOXI1,SMAD2,TFAP2A,WWTR1,YAP1 | 1.43 | 6 | L04 |
hsa-miR-6756-5p | 1.41 | FOXI1,MSX2,PAX7,SMAD3,TFAP2A,TP73,WWTR1 | 1.412 | 7 | L04 |
hsa-miR-513b-5p | 1.41 | FOXI1,GBX2,SMAD2,TEAD1,WWTR1,ZIC1 | 1.406 | 6 | L04 |
hsa-miR-138-5p | 1.37 | AJUBA,FOXI1,MSX2,PAX7,TEAD1,TP73,YAP1 | 1.403 | 7 | L04 |
hsa-miR-548g-5p | 1.34 | FOXI1,GBX2,SMAD4,TP73,YAP1,ZIC1 | 1.342 | 6 | L04 |
hsa-miR-548aj-5p | 1.34 | FOXI1,GBX2,SMAD4,TP73,YAP1,ZIC1 | 1.34 | 6 | L04 |
hsa-miR-548x-5p | 1.34 | FOXI1,GBX2,SMAD4,TP73,YAP1,ZIC1 | 1.339 | 6 | L04 |
hsa-miR-626 | 1.34 | FOXI1,PAX7,SMAD2,SMAD3,TP73,WWTR1 | 1.336 | 6 | L04 |
hsa-miR-382-5p | 1.31 | FOXI1,PAX3,SMAD4,TP73,WWTR1 | 1.311 | 5 | L04 |
hsa-miR-199a-5p | 1.28 | FOXI1,PAX3,SMAD2,SMAD3,TEAD1,TFAP2A,YAP1 | 1.276 | 7 | L04 |
Result table - repPos
Sort by selecting a column name
Rows: 1-10
11-20
21-23
all
Gene name | Rep |
---|---|
AJUBA | 100 |
GBX2 | 100 |
MSX2 | 100 |
PAX3 | 100 |
PAX7 | 100 |
SMAD2 | 100 |
SMAD3 | 100 |
SMAD4 | 100 |
TEAD1 | 100 |
TFAP2A | 100 |
Result table - clusterPos
Sort by selecting a column name
Rows: 1-10
11-20
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31-33
all
Gene 1 | Inter | Gene 2 | Norm |
---|---|---|---|
AJUBA | pp | GBX2 | 19 |
MSX2 | pp | MYC | 15 |
PAX3 | pp | PAX7 | 23 |
SMAD2 | pp | SMAD3 | 23 |
SMAD4 | pp | TEAD1 | 23 |
TFAP2A | pp | TP73 | 21 |
WWTR1 | pp | YAP1 | 23 |
ZIC1 | pp | AJUBA | 21 |
GBX2 | pp | MSX2 | 20 |
MYC | pp | PAX3 | 15 |
Job resubmission
usability assessment
When using metaMIR please cite :
- Jason A. Davis, Sita J. Saunders, Martin Mann, Rolf Backofen
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data
Nucleic Acids Research, 2017, 45 (15), 8745–8757. - Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.
Results are computed with metaMIR version 1.0.0 using R 3.2.1