Download an archive file containing the complete results produced by the job in
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Input and runtime details for job 4596356 (precomputed example)
Sequence Parameters
Query ncRNA (short) in FASTA | [.fa] | ||
Index first query position | 1 | ||
Target RNA (long) in FASTA | [.fa] | ||
Target NCBI RefSeq ID | NC_000913 | ||
All replicons | yes | ||
Extract sequences around | start codon | ||
nt upstream (1-300) | 75 | ||
nt downstream (1-300) | 75 | ||
Index first target position | -75 |
Output Parameters
Seed Parameters
Folding Parameters
Job ID 4596356 (server version trunk)
Job Submitted & Queued | @ Mon Jan 27 14:10:48 CET 2020 | ||
IntaRNA Started | @ Mon Jan 27 14:13:48 CET 2020 | ||
IntaRNA Finished & Post-Processing | @ Mon Jan 27 14:14:50 CET 2020 | ||
Post-Processing Finished | @ Mon Jan 27 14:16:49 CET 2020 | ||
Job Completed | @ Mon Jan 27 14:17:02 CET 2020 |
DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=4596356&toolName=IntaRNA ( 30 days expiry )
Description of the job
FnrS - E. coli
Output
When using IntaRNA please cite :
- Martin Mann, Patrick R. Wright, and Rolf Backofen
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
Nucleic Acids Research, 2017, 45 (W1), W435–W439. - Patrick R. Wright, Jens Georg, Martin Mann, Dragos A. Sorescu, Andreas S. Richter, Steffen Lott, Robert Kleinkauf, Wolfgang R. Hess, and Rolf Backofen
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
Nucleic Acids Research, 2014, 42 (W1), W119-W123. - Anke Busch, Andreas S. Richter, and Rolf Backofen
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
Bioinformatics, 2008, 24 (24), 2849-56. - Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.
Results are computed with IntaRNA version 3.1.3 linking Vienna RNA package 2.4.14