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CRISPRloci 5825354

Input and runtime details for job 5825354 (precomputed example)

Input Parameters

? Sequence(s)[.fa]
? Sequence type
Virus DNA/RNA sequence(s) (FASTA format)

Genome information

? DNA sequence completeness complete

Parameters concerning CRISPR arrays

? CRISPR array orientation prediction Yes
? ML model to use all
? Detect the IS-element Yes
? Compute degenerated repeat Yes
? Fast run mode No
? Enhancement of the predicted array Yes
? Enhancement of the start and end of the array Yes
? Min. repeat length in the array21
? Max. repeat length in the array55
? Min. spacer length in the array18
? Max. spacer length in the array78
? Min. number of repeats in the array3
? Max. edit distance for evaluated array enhancement6
? Max. number of identical spacers in the array4
? Max. number of consecutive identical spacers in the array3
? Max. length of the spacer's margin for the degenerated search30

Parameters concerning Cas genes

? ML model to run combination of both
? Select the classifiers ERT
? Select the regressors ERT
? Max. number of contiguous gaps in a cassette2

Parameters for CRISPR repeat input

? Hit sensitivity (e-value threshold)0.01

Parameters for Virus DNA/RNA input

? Hit sensitivity (e-value threshold)0.000001

Job ID 5825354 (server version trunk)

?Job Submitted & Queued@ Thu Dec 17 15:33:36 CET 2020
?CRISPRloci Started@ Thu Dec 17 15:33:54 CET 2020
?CRISPRloci Finished & Post-Processing@ Thu Dec 17 15:34:25 CET 2020
?Job Completed@ Thu Dec 17 15:34:29 CET 2020
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=5825354&toolName=CRISPRloci ( 30 days expiry )

Description of the job

Genomic region of of Sulfolobus islandicus rod-shaped virus 8 (NC_034623)

Output

Download an archive file containing the complete results produced by the job in [.zip] format.

Results file content

Building a new DB, current time: 12/17/2020 15:33:59 New DB name: /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_5825354//tmp/output-CRISPRVirus/input_genomes.fa New DB title: /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_5825354//tmp/output-CRISPRVirus/input_genomes.fa Sequence type: Nucleotide Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 1 sequences in 0.028342 seconds. Building image file with height: 2000 width: 2000 File saved! Parsing XML input. Drawing features.... Positioning and drawing 36 labels.......................... 5 labels were removed. The map has been drawn. Building image file with height: 2500 width: 2500 File saved! Parsing XML input. Drawing features.... Positioning and drawing 36 labels.......................... 2 labels were removed. The map has been drawn. Building image file with height: 3000 width: 3000 File saved! Parsing XML input. Drawing features.... Positioning and drawing 36 labels.......................... 0 labels were removed. Drawing tick marks. Drawing legends. The map has been drawn. Writing picture to /scratch/rna/bisge001/RNA_results/CARNA-result/CRISPRloci_5825354/annotations_details.svg ################################################################################### ########## CRISPR: Master Script ######### ################################################################################### Directory already exists: /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_5825354/

When using CRISPRloci please cite :

Results are computed with CRISPRloci version 1.1.0
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