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Namespace(cross_validation=False, input_files=['/scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0475185//input.fa'], model_path='Models/model_r.h5', output_folder='Results', repeat_type=True, training=False, usecols=[0, 5])
Model: "model_1"
__________________________________________________________________________________________________
Layer (type) Output Shape Param # Connected to
==================================================================================================
input_1 (InputLayer) [(None, 4, 38, 1)] 0
__________________________________________________________________________________________________
conv2d_1 (Conv2D) (None, 1, 35, 32) 512 input_1[0][0]
__________________________________________________________________________________________________
conv2d_2 (Conv2D) (None, 1, 34, 32) 640 input_1[0][0]
__________________________________________________________________________________________________
conv2d_3 (Conv2D) (None, 1, 33, 32) 768 input_1[0][0]
__________________________________________________________________________________________________
conv2d_4 (Conv2D) (None, 1, 31, 32) 1024 input_1[0][0]
__________________________________________________________________________________________________
conv2d_5 (Conv2D) (None, 1, 29, 32) 1280 input_1[0][0]
__________________________________________________________________________________________________
activation_1 (Activation) (None, 1, 35, 32) 0 conv2d_1[0][0]
__________________________________________________________________________________________________
activation_2 (Activation) (None, 1, 34, 32) 0 conv2d_2[0][0]
__________________________________________________________________________________________________
activation_3 (Activation) (None, 1, 33, 32) 0 conv2d_3[0][0]
__________________________________________________________________________________________________
activation_4 (Activation) (None, 1, 31, 32) 0 conv2d_4[0][0]
__________________________________________________________________________________________________
activation_5 (Activation) (None, 1, 29, 32) 0 conv2d_5[0][0]
__________________________________________________________________________________________________
batch_normalization_1 (BatchNor (None, 1, 35, 32) 128 activation_1[0][0]
__________________________________________________________________________________________________
batch_normalization_2 (BatchNor (None, 1, 34, 32) 128 activation_2[0][0]
__________________________________________________________________________________________________
batch_normalization_3 (BatchNor (None, 1, 33, 32) 128 activation_3[0][0]
__________________________________________________________________________________________________
batch_normalization_4 (BatchNor (None, 1, 31, 32) 128 activation_4[0][0]
__________________________________________________________________________________________________
batch_normalization_5 (BatchNor (None, 1, 29, 32) 128 activation_5[0][0]
__________________________________________________________________________________________________
global_max_pooling2d_1 (GlobalM (None, 32) 0 batch_normalization_1[0][0]
__________________________________________________________________________________________________
global_max_pooling2d_2 (GlobalM (None, 32) 0 batch_normalization_2[0][0]
__________________________________________________________________________________________________
global_max_pooling2d_3 (GlobalM (None, 32) 0 batch_normalization_3[0][0]
__________________________________________________________________________________________________
global_max_pooling2d_4 (GlobalM (None, 32) 0 batch_normalization_4[0][0]
__________________________________________________________________________________________________
global_max_pooling2d_5 (GlobalM (None, 32) 0 batch_normalization_5[0][0]
__________________________________________________________________________________________________
cutoff_layer (Concatenate) (None, 160) 0 global_max_pooling2d_1[0][0]
global_max_pooling2d_2[0][0]
global_max_pooling2d_3[0][0]
global_max_pooling2d_4[0][0]
global_max_pooling2d_5[0][0]
__________________________________________________________________________________________________
dense_1 (Dense) (None, 256) 41216 cutoff_layer[0][0]
__________________________________________________________________________________________________
activation_6 (Activation) (None, 256) 0 dense_1[0][0]
__________________________________________________________________________________________________
dropout_1 (Dropout) (None, 256) 0 activation_6[0][0]
__________________________________________________________________________________________________
dense_2 (Dense) (None, 32) 8224 dropout_1[0][0]
__________________________________________________________________________________________________
activation_7 (Activation) (None, 32) 0 dense_2[0][0]
__________________________________________________________________________________________________
dropout_2 (Dropout) (None, 32) 0 activation_7[0][0]
__________________________________________________________________________________________________
dense_3 (Dense) (None, 1) 33 dropout_2[0][0]
__________________________________________________________________________________________________
activation_8 (Activation) (None, 1) 0 dense_3[0][0]
==================================================================================================
Total params: 54,337
Trainable params: 54,017
Non-trainable params: 320
__________________________________________________________________________________________________
Reading the files...
GTTCACTGCCGTACAGGCAGCTAAGAAA I-F 0.9993531107902527
CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC I-D 0.924616813659668
GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC III-B 0.8701797723770142
GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC III-A 0.9270436763763428
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC I-C 0.9510350227355957
ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC I-B 0.9011879563331604
0.5833333333333334
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########## CRISPR: Master Script #########
###################################################################################
Directory already exists: /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0475185/