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/scratch/rna/bisge001/Software/CRISPRloci/1.1.0/CRISPRloci_Webserver/Casboundary
Generating Genome DataFrame
Searching for potential signature proteins
Extracting potential regions.
Running hmmsearches.
Extracting HMM features and protein properties features.
Finding cassette boundaries.
Labeling Cas proteins.
Merging and saving final predictions.
Decomposing into modules.
Saving predictions.
Total runtime in seconds: 187.49
Running hmmsearch (log and outputs stored in /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette1/hmmsearch)
Annotating proteins
Building cassettes
Saving cassette(s) to /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette1/cassette/HMM2019_cassette_arrays.txt
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There are 2 unlabeled proteins for cassette # 1 and HMM2019
ERT missing bitscore prediction for cassette #1, HMM2019 and csx18 (1/2): 0.941391
ERT missing bitscore prediction for cassette #1, HMM2019 and cas6 (2/2): 0.015354
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Loading classifiers and running classification
Predictions for HMM2019 and ERT regressor
Cassette #1 -- ERT classifier: CAS-III-B
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Saving class predictions to /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette1/predictions.csv
Running hmmsearch (log and outputs stored in /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette2/hmmsearch)
Annotating proteins
Building cassettes
Saving cassette(s) to /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette2/cassette/HMM2019_cassette_arrays.txt
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There is 1 unlabeled protein for cassette # 1 and HMM2019
ERT missing bitscore prediction for cassette #1, HMM2019 and cas13 (1/1): 0.000006
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Loading classifiers and running classification
Predictions for HMM2019 and ERT regressor
Cassette #1 -- ERT classifier: CAS-I-D
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Saving class predictions to /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette2/predictions.csv
Running hmmsearch (log and outputs stored in /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette3/hmmsearch)
Annotating proteins
Building cassettes
Saving cassette(s) to /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette3/cassette/HMM2019_cassette_arrays.txt
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There is 1 unlabeled protein for cassette # 1 and HMM2019
ERT missing bitscore prediction for cassette #1, HMM2019 and csx25 (1/1): 0.060000
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Loading classifiers and running classification
Predictions for HMM2019 and ERT regressor
Cassette #1 -- ERT classifier: CAS-III-D
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Saving class predictions to /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488//tmp/output-CRISPRcasIdentifier/Cassette3/predictions.csv
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########## CRISPR: Master Script #########
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Directory already exists: /scratch/rna/bisge001/RNA_results/CARNA-result//CRISPRloci_0109488/