INFO-RNA is a server for the design of RNA sequences that fold into a given pseudo-knot free RNA secondary structure. Here, you can get an example of the settings and the results. Some hints how to handle structures including small pseudo-knots can be found in the Help page.

Note: SECISDesign is not maintained anymore.
The source code is available at http://www.bioinf.uni-freiburg.de/Software/

For articles describing the tool and webserver refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

• Anke Busch and Rolf Backofen
  INFO-RNA - A Server for Fast Inverse RNA Folding Satisfying Sequence Constraints
  Nucleic Acid Research, 35 (Web Server Issue) W310-3, 2007
  
• Anke Busch and Rolf Backofen
  INFO-RNA - a fast approach to inverse RNA folding
  Bioinformatics, 22 no. 15 pp. 1823-31, 2006
  
• Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
  Freiburg RNA tools: a central online resource for RNA-focused research and teaching
  Nucleic Acids Research, 46(W1), W25-W29, 2018.