CopomuS - Compensatory mutation selector

CopomuS evaluates and ranks possible compensatory point mutations within IntaRNA mfe predictions to guide respective validation experiments.

For articles describing the tool and webserver refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

Try CopomuS with this example: RybB-tsx (Papenfort et al., 2010) (input|result)

When using CopomuS please cite :

Martin Raden, Fabio Gutmann, Michael Uhl, and Rolf Backofen
CopomuS - ranking compensatory mutations to guide RNA-RNA interaction
International Journal of Molecular Sciences, 21(11),3852, 2020.
Martin Mann, Patrick R. Wright, and Rolf Backofen
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
Nucleic Acids Research, 2017, 45 (W1), W435–W439.
Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.

Results are computed with CopomuS version part of IntaRNA package (check IntaRNA version information)

Main Menu

Freiburg RNA Tools

Interaction Prediction

Seq-Str Alignment

CRISPR

Sequence Design

Splicing

SNP & Mutation

Classification

Gene set extension

MoDPepInt Server

CPSP-Tools Server

Galaxy-FR

CMV server

Teaching

CopomuS - Compensatory mutation selector

[+] Sequence Parameters [-] Sequence Parameters

[+] Mutation Parameters [-] Mutation Parameters

[+] Evaluation Parameters [-] Evaluation Parameters

[+] IntaRNA Parameters [-] IntaRNA Parameters

When using CopomuS please cite :