Input and runtime details for job 0109488 (precomputed example)

Input Parameters

	Sequence(s)		[.fa]
	Sequence type		Protein sequence(s) (FASTA format)

Genome information

DNA sequence completeness

complete

Parameters concerning CRISPR arrays

	CRISPR array orientation prediction		Yes
	ML model to use		all
	Detect the IS-element		Yes
	Compute degenerated repeat		Yes
	Fast run mode		No
	Enhancement of the predicted array		Yes
	Enhancement of the start and end of the array		Yes
	Min. repeat length in the array		21
	Max. repeat length in the array		55
	Min. spacer length in the array		18
	Max. spacer length in the array		78
	Min. number of repeats in the array		3
	Max. edit distance for evaluated array enhancement		6
	Max. number of identical spacers in the array		4
	Max. number of consecutive identical spacers in the array		3
	Max. length of the spacer's margin for the degenerated search		30

Parameters concerning Cas genes

	ML model to run		combination of both
	Select the classifiers		ERT
	Select the regressors		ERT
	Max. number of contiguous gaps in a cassette		2

Parameters for CRISPR repeat input

Hit sensitivity (e-value threshold)

0.01

Parameters for Virus DNA/RNA input

Hit sensitivity (e-value threshold)

0.000001

Job ID 0109488 (server version trunk)

	Job Submitted & Queued		@ Fri Dec 18 08:01:24 CET 2020
	CRISPRloci Started		@ Fri Dec 18 08:01:41 CET 2020
	CRISPRloci Finished & Post-Processing		@ Fri Dec 18 08:10:41 CET 2020
	Job Completed		@ Fri Dec 18 08:10:47 CET 2020

DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=0109488&toolName=CRISPRloci ( 30 days expiry )

Description of the job

Protein mode

CAS Protein Classification

Sort by selecting a column name. [Download Table Data]

ID	Input-ID	Cas	cassetteID	Subtype	Module	Length	Sequence
Prot9	NC_005230.1_9	wyl	2	CAS-I-D	interference	315	MKFQYNSLTFAIEVLKALAKEPCYRKNLTEQLELFLEQHQQPADDVAQKLTRTIRKLRDCGFEIESAPHRPYVLKKSNFPVILSADQRQALYLATHLLEQMGFSQQASQLQDICPLTEGDRPRHLRADFNPPVDYSDIKTKEIITNLQKRLETACRFTIRYRNSLGKEALWDLDRSELRLHNGSLYLFAYVPDILTQRIQKRPNIEQNVLFRIDRILSVNPSSNIHWLLSSFPTLKVQYRMIGSLSKYKPRRHNETVINRNVEQNYVEIETNEDCLFWFRQRILQYGSNVQILTPQWLHQEIVEEHLKAIQSTK*
Prot10	NC_005230.1_10	cas3	2	CAS-I-D	interference	723	MSLPKVGAMKVQVKPLYAKLNEGLGQCPLGCQSVCTVREQAPEMQPPDGCSCPLYDHQAQTYALTTAGDTDIIFNRVATGGGKSLGATLPALLPKVHPDFRVMGLYPTIELVEDQYRQQQQYHQMFGLNAEKRVDRLYGAELARRISEKDSNRFQELLKSIEQKPVIQTNPDIFHYITHFRYRDNARSQSELPMVMAKFPDLWVFDEFHIFGEHQMAAALNSLLLIRHATQSKRKFLFTSATPKTSFVESLKNSGFKIAEIQGEYSDRPQQGYRQILQNINLEFVHLKDTDTESWLLAQSQNLRDLLHQEKNGRGLIIVNSVAAAGHLCRNLSKILPDVEVREISGRCDRQERQQTQTYLQKSEKSVLVVATSAVDVGVDFKIHVLICESSDSATVIQRLGRLGRHGGFQQYQAYVLIPSQTQWVIASLKEELEEDSSIDRLELSTVIETAFNAPQEFKQYQKIWGELQAQGMLYQMVYGGSRSESKDNLAVTQDLRDRMIESLEKIYQKQINGFGRWWGLSNDAVGKATQEELLRFRGGSSLQSGIWDGDRLYSYDLLKVLTYATVEVIDREIFLEAAQKLNHGIEEFPEQYLTGYFKITKWLDQRLNFSLFSTHSHLASCQLMLLDRLQLKGHIQPELSRCLGRRKYLAYLVPINRNNPSSHWDISRKLRLSPLFGLYRLTDSGGNAYGCAFNHDALLLEALKWRLGDFCKQATSQSLIF*
Prot11	NC_005230.1_11	cas10d	2	CAS-I-D	interference	976	MTTLLQTLLIRTLSEQKDYILLEYFQTILPALEEHFGNTSGLGGSFISHQKHFGTQGYDTEKAKKMAQGFAKKGDQTLAAHILNALLTTWNVMQELEFPLNDIERRLLCLGITLHDYDKHCHAQDMAAPEPDNIQEIINICLELGKRLNFDEFWADWRDYIAEISYLAQNTHGKQHTNLISSNWSNAGYPFTIKERKLDHPLRHLLTFGDVAVHLSSPHDLVSSTMGDRLRDLLNRLGIEKRFVYHHLRDTTGILSNAIHNVILRTVQKLDWKPLLFFAQGVIYFAPQDTEIPERNEIKQIVWQGISQELGKKMSAGDVGFKRDGKGLKVSPQTSELLAAADIVRILPQVISVKVNNAKSPATPKRLEKLELGDAEREKLYEVADLRCDRLAELLGLVQKEIFLLPEPFIEWVLKDLELTSVIMPEETQVQSGGVNYGWYRVAAHYVANHATWDLEEFQEFLQGFGDRLATWAEEEGYFAEHQSPTRQIFEDYLDRYLEIQGWESDHQAFIQELENYVNAKTKKSKQPICSLSSGEFPSEDQMDSVVLFKPQQYSNKNPLGGGQIKRGISKIWSLEMLLRQAFWSVPSGKFEDQQPIFIYLYPAYVYAPQVVEAIRELVYGIASVNLWDVRKHWVNNKMDLTSLKSLPWLNEEVEAGTNAQLKYTKEDLPFLATVYTTTREKTDTDAWVKPAFLALLLPYLLGVKAIATRSMVPLYRSDQDFRESIHLDGVAGFWSLLGIPTDLRVEDITPALNKLLAIYTLHLAARSSPPKARWQDLPKTVQEVMTDVLNVFALAEQGLRREKRDRPYESEVTEYWQFAELFSQGNIVMTEKLKLTKRLVEEYRRFYQVELSKKPSTHAILLPLSKALEQILSVPDDWDEEELILQGSGQLQAALDRQEVYTRPIIKDKSVAYETRQLQELEAIQIFMTTCVRDLFGEMCKGDRAILQEQRNRIKSGAEFAYRLLALEAQQNQN*
Prot12	NC_005230.1_12	csc2	2	CAS-I-D	interference	330	MLDSLKSQFQPSFPRLASGHYVHFLMLRHSQSFPVFQTDGVLNTTRTQAGLLEKTDQLSRLVMFKRKQTTPERLAGRELLRNLGLTSADKSAKNLCEYNGEGSCKQCPDCILYGFAIGDSGSERSKVYSDSAFSLGAYEQSHRSFTFNAPFEGGTMSEAGVMRSAINELDHILPEVTFPTVESLRDATYEGFIYVLGNLLRTKRYGAQESRTGTMKNHLVGIVFADGEIFSNLHLTQALYDQMGGELNKPISELCETAATVAQDLLNKEPVRKSELIFGAHLDTLLQEVNDIYQNDAELTKLLGSLYQQTQDYATEFGALSGGKKKAKS*
Prot13	NC_005230.1_13	csc1	2	CAS-I-D	interference	255	MTKIYRCKLTLHDNVFFASREMGILYETEKYFHNWALSYAFFKGTIIPHPYGLVGQNAQTPAYLDRDREQNLLHLNDSGIYVFPAQPIHWSYQINTFKAAQSAYYGRSVQFGGKGATKNYPINYGRAKELAVGSEFLTYIVSQKELDLPVWIRLGKWSSKIRVEVEAIAPDQIKTASGVYVCNHPLNPLDCPANQQILLYNRVVMPPSSLFSQSQLQGDYWQIDRNTFLPQGFHYGATTAIAQDSPQLSLLDTN*
Prot14	NC_005230.1_14	cas6	2	CAS-I-D	processing	263	MFDDRYSLYSVVIELGAAKKGFPTGILGRALHSQVLEWLKIGEPSLAEELHQSQISPFSISPLIGKRRSKLTEEGDRFFFRISLLNGSLLQPLLKGLEQQDKQIVMLDKFAFRLCHIHILPGSHSLARASSYALTTQAPTSSKITLKFHSATSFKIDRNTIQPFPLGDSVFNSLLRRWNHFAPEELYFPSVSWQIPVAAFELKTYSVQLKKSEIGSEGWVTYLFPDQEQAKIASVLSQFAFFAGVGRKTSMGMGQVSVNNHG*
Prot15	NC_005230.1_15	cas4	2	CAS-I-D	adaptation	191	MDDYLPLAYLNAWEYCHRRFYLEYVLGEMEINEHIIRGNHLHRNINEAGTSVDGDTRIHRQQWVWSDRLKVKGIIDAVEESDGLLIPVEYKKGKMGKHLNDHFQLCAAALCLEEKTGKSITYGEIFYYGNRRRQPVEFTQALRNMTEQAIIAAHLACNGPMPRPIANTKKCADCSLERLCLPKELKKLTK*
Prot16	NC_005230.1_16	cas1	2	CAS-I-D	adaptation	326	MSTLYLTQPDAVLSKKHEAFHVALKQEDGSWKKQPIPAQTLEDIVLLGYPSITGEALGYALELGLPVHYLTQFGKYVGSALPSESRNGQLRLAQFRAHEDPIQRLDIVKAFVKGKVHNQYNLLYRRGQVDNPLKGRGKLVMRQQTLEQVRGIEGLAAREYFASWQEMLGHEWTFTGRFRRPPTDPVNALLSFGYGLLRTQVTAAVHIAGLDPYIGFLHETTRGQPAMILDLMEEFRALVADSVVLTVLKQREIQRQDFTESLGAFRLTDSATKTFLGAFDRKLSSEFKHPIFNYKCTYRRAIELQARLLARHLQEGVVYEPLVIR*
Prot17	NC_005230.1_17	cas2	2	CAS-I-D	adaptation	95	MLYLIIYDVPATKAGNKRRTRLFDLLSGYGKWRQFSVFECFLSVKQFAKLQTAMEKLIKLDEDAVCIYVLDENTVQRTITYGTPQPEKPGSIII*
Prot93	NC_005230.1_93	cmr6	1	CAS-III-B	interference	646	MEKPRPQKPQPPLSPNPGGKDKNSPKKKVITTPVSGGGKKAGGGSGGNQPPSPWLNPQTSPNPAKIASFVEYLRWMRPADHQYKDATKVQILQKAMENAKNYDARLSVCNQRTKAIAKETFEVTCPWRIRVGGHRGPESILLPAFDALGMPYIPSATLRGVARTQAIREVMQNTGKNWKDAEKDSLIVKHFGALDADKADQAGKVVFLDAYPTSGKCLAVDMANNIWSWEGNHLDYSPNPNPFLSLKEPTFLIGLRLISNCSDQQVLTQVKKWLINGLANGAGSQINTGYGQLLENPKKLLSKPFLEVEFALEGQLIHGYQKPGEWSWNNNKNEWQMRGSNQAEVRPTAFKSMLRYWFRVFALGVMPPKNTKVLEAKIFGSLDPQSMGIIKVTVLEKEPENENEQSGTLRLFFTSEVDENQKDNLQNLFSNLIWLMFYLGGIGQGARRPCYYRKGNPKIRGSSFFVQNPSEFSSIPGNIDEFRLRILGKITQLIDLLSLLKTTFNFTERSNNFNHSSHQWTECADLNMRIFVVPNANQDNAKSYALSKLNQKFHQLDDQIKSLKKEKNFPELKRVYSELKSLCGGVQKDKILVNGQQKERKVLPSPIWVRSLGPFDVVTIFGATASPRSDYLRSLQGAIQIFPLS*
Prot94	NC_005230.1_94	cmr5	1	CAS-III-B	interference	132	MPNFDPRTINKQAFQSLQALRHQAGQDNALLKEQKNQAMELYTYLSTWGLMRLKAEEVALSQTGKKQVVQRFFNDLGTLSGRNNLADSQGLNTLVALSANEYLGLTGLGIELANEFGFWANAVYHDITGAQ*
Prot95	NC_005230.1_95	cmr4	1	CAS-III-B	interference	260	MNIQHLYLLSPLHTGGTTQEGNLLGIARESHTNFPYIPSSTIRGRLRAAVDDNKRDALFGNDLNSDNGNLTQGSVWVGDGSLLWLPVPSLSHGVIWISCPLLLNRYARVANVAAQPAIVPYLCNFYQANEKVYLKDAIFDHSELNQWSQAEVKKFIPNQSNMTIERALVLPDQHCATVIQMGLWRQVKIKLDQHKTVDGGFRYEEAIPPDTLMYFPWGITAQAKGNQEAGEQFQDLLTVNEIMQIGGQESLGRGFVECF*
Prot96	NC_005230.1_96	unknown	1	CAS-III-B	potential_cas	127	MDLAVSKIQLSNPSQNHLQALTVEALADSETVHLCIPDHIQIQLQLEIVDQKEVTLADGSRRLIPYVGPIKIKFENRIGFAGALVMGDQVLLGAIPMEDMDLIIIPSERRLAVNPHSPNIATSIAK*
Prot97	NC_005230.1_97	cmr3	1	CAS-III-B	interference	371	MYWYSLTPLDILLLRDAKPFTPGDRAWAGSIFPPNGHTLAGAVRSLLPQNQTISLIGPLLYHKETLYFPRPLGFVGKTPLLPLPWHDATSPLRSQMLWDKTQPAPLAPLETVSQTDIKRDEKQARTWLPLDVMMGYLQTGAIKPEDWARPEDEDSQPWTMESRPHNSIEAGTRQVKESDGYFVENGIRLKENWSLAIAVDPTTHQQLQSLPQPLSMRLGGEGHRVTLVHRPALDQQWQRLQTLSDQNYQQRQKAIAYLMTPGIFERGRDGVSTCRPYPWEWKLTHNQGSFISMATDRAVAISPRIRDRQRNPGHSIPAPQVFAAPPGTVYYLNQPQGLFADQDNAPKHLQQTRKLGYSHLLWVNLQEVNR*
Prot98	NC_005230.1_98	cas10	1	CAS-III-B	interference	980	MSEVYWQAKIWGLLHDPALKALHNNSGRGGEGAWQSLGCMQNWVSPKSSTEKKDGELSNSWLDHIGLSDLIASASDRGAIHYIGTPIDYDGKGLELSHLLSGAKLPLKLANHSEIIGQGNRRTYLEQKELELIQQMPAEFLHGTDKAQECFWWLWRCLPEAVAEQFGPESLLMPAETRLPDASIWSHGSMTAALAGALAGYDTNIEDIAKGARNTPKSQAYLAVFTFSPIQELIKASRKIKDFWAGSWILHYLSAKVCWELAQQYGPDCFLYPSLYGQPLIDHWLLEKYGEQGFSQWVPQPGDRQLLTAGFPNVIMLVLPKEKVSAAMQSAKNHLLNAWRNIAHLVFAELQQRHWQKQLNPTDPTWKHWLDAQWQTYWSAMAIGAEGKTLKSVGIPTQTPESKAQRDQWVREQNEAFSASLFAQEELDFIEKSTDLFIQQRNRNYAGSLNVGSWWADIFGQTRFTLSAVKNARNWKIPTAFGPRSTISGLGPVVHPQAPSHQRDWVTEGDTQKYWQRQAGLFDGSEQLNATETVKRGLEKVLPALLGRGAKELKTYYPDLTVGIAGYLKTQPDGLPIFEQACSAISQKILGDRHKVADSVTQDWGIPWVEENMEKKYHPRLLNSGWLVEELEDLDQTELPSYRQALQTEIEKFYPQNNPTSWYVLAAGDGDGMSEWLKGTKMRTYGDYFPQVLTVPEDLQPTFQPFSEQPKRMGPATHNALSRALLDFSNQLVPYLTEQRYAGRLIYSGGDDVLAYTNLWEWDQWLWDIRQAFRGDRDEHREFDSTGHYWHSKTAHKNLPQRPLFTMGDGATISFGITIAHHSVPLAIALEHLWEAEEEAKEHEYGEGEDKKSKDAVQVRVIYGNGNVLTATSKFEVFKTWKDLLDIETIDASTYETAATVLEQHPIPVREAIMPWVNVLVERRDALDKDQQSTLRSRLACFLIQLWQTTSQKNWEKEAKNWLKVAAFMKRNRYIKFPN*
Prot99	NC_005230.1_99	unknown	1	CAS-III-B	potential_cas	98	MGISPLEQPPHHNITKNTEHESRTGHQQGIDNHRRQTQRGNKQNHQSDQTIGNGQDKIAGKEKSGRGIHATGHSEESCRNFNSPNHKNSMKFFKHKY*
Prot100	NC_005230.1_100	cas1	1	CAS-III-B	adaptation	330	MKTLYVSQSDCYVSLRKEFLLVKRQDRILAEVQLPFLEQVLIFGKAQVTTQAIHACLSRNIPILYLSRMGFCYGRIIAIERGYRHLSRYQQELGWQQRLITARTIVAAKIKNARVFLQRQHRKHPTPSLQLAIDGLKHFVELTVKADKLEQLLGYEGTAANLYFQAWADCIENSNFIFFGRSRRPPGNPVNAMLSFGYQVLWNHLLTLIELQGLDPYQACLHQGSERHAALASDLIEEFRVPIVDSLVLYMINRRLIDVGEDFVFQNGGCFLNSSGRRKWLGAFVGRMEEFLSFDQGDFPRWHCLIDQVKKYKAFIYSPSNSYSPFLIR*
Prot101	NC_005230.1_101	cas2	1	CAS-III-B	adaptation	93	MFLYVIAYDIPDDRRRKKMADLLEGYGQRVQYSVFECTLSKSKFNELQKRLRKIYQSEEDSLRFYPLSGHTLTQVDIWGEPPLTKPPGSVIV*
Prot70	NC_005230.1_70	csx1	3	CAS-III-D	interference	423	MKIISFLGFNNYQTTTYVHPTNPEITCKTRFFQEALVDFYRPTEIYVLLTKTVATVAPRGAEVTNWQGLQDCLADKVTIRPIEDIPEGSAPEDLWDIFDCITDCLDHGDRVIFDFTHGYRFLPVVALLAISYLRTVRQVQVEGVLYGAFDPNSQGESSPTYDLLPMLSLLDWLAATDRFVNLGDGLPLAQLLQTAIPGAERRDNPEVRNPGSRLDQAGKVIAEISQAIALARPMETLELTVQLEEIINRASDSFDQRAKPFNLIKDQLLAEYGQFALPESWEPENLQRNLWLQFQLINWYLQRGQAVQAMTLASEWLISVVAFRLGAKQILDHRKQINFALNNGGAVQKKREPVGPSSFDEQFQALSQYQFLSQLWNDLTEIRNDLAHCGMRKDPKSAKKLQEKANKIFPQLEEIANSLLKQ*
Prot71	NC_005230.1_71	csm6	3	CAS-III-D	interference	372	MPNVIVSPCGTSLLTNQIDDSLRKLINRNSNLKEAEISSEDKAQIDRHYQQRSQELNEEDIEGAKKLSAELNGILTYSKGQISTSDHYYLIATDTYVGGLTATLVTDWIQSHQGNAFLTIIRDLSTKEIETFRLAMSEIVRWCDYELNNQYPQPAWKRIFNLTGGFKSVNGFLQALAMFYADESIYIFESDGQLLTIPKLPIKLSPEDDLANNLDIFRRLAILGHEIPANECQNISGALLEQVDGRASLSEWGQLVWQQFSGGHYQNQLLPPLTSKLKYSEEFVIDIQSLPRDRLAIINARLDDLTRCLESNGEYNPRSLRFHSLEGRLFRGRLSPEPTHECYAWSDKDAKRIYGHFEDNVFIIDKLGLHL*
Prot72	NC_005230.1_72	csm3	3	CAS-III-D	interference	796	MTVGTLGVVGSAKNLKLQLSFINTRQQYVQITLFERNSFKVAEEEFSTELVEIIKTALPTLKNKKVEFEEDGDQIKQIREKGQAWVGAAEQIAPYVLPSGNITETPRNVNASNFHNPYNFVPALPRDGITGDLGDCAPAGHSYYHGDKYSGRIAVKLTTVTPLLIPDASKEEINNNHKTYPVRIGKDGKPYLPPTSIKGMLRSAYEAVTNSRLAVFEDHDSRLAYRMPATMGLQMVPARIEGDNIVLYPGTSRIGNNGRPANNDPMYAAWLPYYQNRIAYDGSRDYQMAEHGDHVRFWAERYTRGNFCYWRVRQIARHNQNLGNRPERGRNYGQHHSTGVIEQFEGFVYKTNKNIGNKHDERVFIIDRESIEIPLSRDLRRKWRELITSYQEIHKKEVDRGDTGPSAVNGAVWSRQIIADESERNLSDGTLCYAHVKKEDGQYKILNLYPVMITRGLYEIAPVDLLDETLKPATDKKQLSPADRVFGWVNQRGNGCYKGQLRIHSVTCQHDDAIDDFGNQNFSVPLAILGQPKPEQARFYCADDRKGIPLEDGYDRDDGYSDSEQGLRGRKVYPHHKGLPNGYWSNPTEDRSQQAIQGHYQEYRRPKKDGLEQRDDQNRSVKGWVKPLTEFTFEIDVTNLSEVELGALLWLLTLPDLHFHRLGGGKPLGFGSVRLDIDPDKTDLRNGAGWRDYYGSLLETSQPDFTTLISQWINAFQTAVKEEYGSSSFDQVTFIKASGQSLQGFHDNASIHYPRSTPEPKPDGEAFKWFVANEKGRRLALPALEKSQSFPIKPS*
Prot73	NC_005230.1_73	csx19	3	CAS-III-D	interference	187	MKNLYHYHQYEITLESAVDSCKNHLQAAIGLLYSPQKCELVKLDNSGKLVDSYNRLKFNNLGVFEARFFNLNCELRWVNESNGNGTAVLLSESDITLTGFEKGLQEFITAIDQQYLLWGEPAKHPPNADGWQRLAEARIGKLDIPLDNPLKPKDRVFLTSEEYIAEVDDFGNCAVIDERLIKLEVK*
Prot74	NC_005230.1_74	csm3	3	CAS-III-D	interference	523	MARKVTTRWKITGTLIAETPLHIGGVGGDADTDLALAVNGAGEYYVPGTSLAGALRGWMTQLLNNDESQIKDLWGDHLDAKRGASFVIVDDAVIHIPNNADVEIREGVGIDRHFGTAANGFKYSRAVIPKGSKFKLPLTFDSQDDGLPNALIQLLCALEAGDIRLGAAKTRGLGRIKLDDLKLKSFALDKPEGIFSALLDQGKKLDWNQLKANVTYQSPPYLGISITWNPKDPVMVKAEGDGLAIDILPLVSQVGSDVRFVIPGSSIKGILRTQAERIIRTICQSNGSEKNFLEQLRINLVNELFGSASLSQKQNGKDIDLGKIGALAVNDCFSSLSMTPDQWKAVENATEMTGNLQPALKQATGYPNNISQAYKVLQPAMHVAVDRWTGGAAEGMLYSVLEPIGVTWEPIQVHLDIARLKNYYHGKEEKLKPAIALLLLVLRDLANKKIPVGYGTNRGMGTITVSQITLNGKALPTELEPLNKTMTCPNLTDLDEAFRQDLSTAWKEWIADPIDLCQQEAA*
Prot75	NC_005230.1_75	csm3	3	CAS-III-D	interference	792	MRGIEITITMQSDWHVGTGMGRGELDSVVQRDGDNLPYIPGKTLTGILRDSCEQVALGLDNGQTRGLWHGWINFIFGDQPALAQGAIEPEPRPALIAIGSAHLDPKLKAAFQGKKQLQEAIAFMKPGVAIDAITGTAKKDFLRFEEVVRLGAKLTAEVELNLPDNLSETNKKVIAGILASGAKLTERLGGKRRRGNGRCELKFSGYSDQQIQWLKDNYQSVDQPPKYQQNKLQSAGDNPEQQPPWHIIPLTIKTLSPVVLPARTVGNVVECLDYIPGRYLLGYIHKTLGEYFDVSQAIAAGDLIITNATIKIDGKAGRATPFCLFGEKLDGGLGKGKGVYNRFQESEPDGIQLKGERGGYVGQFEQEQRNLPNTGKINSELFTHNTIQDDVQRPTSDVGGVYSYEAIIAGQTFVAELRLPDSLVKQITSKNKNWQAQLKATIRIGQSKKDQYGKIEVTSGNSADLPKPTGNNKTLSIWFLSDILLRGDRLNFNATPDDLKKYLENALDIKLKERSDNDLICIALRSQRTESWQVRWGLPRPSLVGWQAGSCLIYDIESGTVNAEKLQELMITGIGDRCTEGYGQIGFNDPLLSASLGKLTAKPKASNNQSQNSQSNPLPTNHPTQDYARLIEKAAWREAIQNKALALASSRAKREEILGIKIMGKDSQPTMTQLGGFRSVLKRLHSRNNRDIVTGYLTALEQVSNRKEKWSNTSQGLTKIRNLVTQENLIWNHLDIDFSPLTITQNGVNQLKSELWAEAVRTLVDAIIRGHKRDLEKAQENESNQQSQGAA*
Prot76	NC_005230.1_76	cas10	3	CAS-III-D	interference	559	MFLVLIETSGNQHFIFSTNKLRENIGASELTYLATTEILFQGVDRVFQTNYYDQWSDTNSLNFLADSKLNPAIDDPKNNADIEILLATSGKAIALVKEEGKAKQLIKEVTKQALINAPGLEIGGIYVNCNWQDKLGVAKAVKEAHKQFEVNRAKRAGANGRFLRLPIAAGCSVSELPASDFDYNADGDKIPVSTVSKVKRETAKSAKKRLRSVDGRLVNDLAQLEKSFDELDWLAVVHADGNGLGQILLSLEKYIGEQTNRNYIDKYRRLSLALDNCTINAFKMAIAVFKEDSKKIDLPIVPLILGGDDLTVICRGDYALEFTREFLEAFEGQTETHDDIKVIAQKAFGVDRLSACAGISIIKPHFPFSVAYTLAERLIKSAKEVKQKVTVTNSSPITPFPCSAIDFHILYDSSGIDFDRIREKLRPEDNTELYNRPYVVTAAENLSQAQGYEWSQAHSLQTLADRVSYLRSEDGEGKSALPSSQSHALRTALYLEKNEADAQYSLISQRYKILKNFAEDGENKSLFHLENGKYVTRFLDALDAKDFFANANHKNQGE*
Prot77	NC_005230.1_77	cas6	3	CAS-III-D	processing	367	MDLKSLAGAEMVGLRWQLRFDRPCRLESHYVKGLHAWFLHQVQAIDPDVSAWLHDGQGEKPFTISRLIGPTLWQEGHWHWQINKTYHWQLNLLSGALIEALQPWLARLPNKIVLARQTLWVEAVDCYLAPHNYQQLWPQGALPRRQEFTFTSPTSFRRQGNHYPLPEPRNVLQSYLRRWNDFSGLAFEPEPFLDYWVPQNVVIDRHWLESVKTTAGKQGSVVGFVGAVSLVLTPQARNDGDDYGRLFHALCRYGPYCGTGHKTTFGLGQTMAGWATPDLKTFACLQEDLQTQVLTQRIDQCASLLLAQRQRTGGQRAQEICHTLATIFVRREQGESLQEIALDLQLPYETARTYSKRAKRALANVQ*
Prot78	NC_005230.1_78	csx18	3	CAS-III-D	interference	105	MKIIITAKGALLRNLATALVNGAITLTILLIAPLGLLAVITNTVLIMISTFVVNSFGDRVVQWVLKPETMGAQIGYGEQTNVNKENLLPGQGLPQSRDQGPRNY*
Prot79	NC_005230.1_79	unknown	3	CAS-III-D	potential_cas	125	MENPNQYQNYAQQMDKEKSERLVRKTLYISRRAIWVNILLSILISYVAGYIHTRRWKALGIVVVGTFVFGFLTASENESLEEAVERGITLSPLFGLIGTIDNSLAIRRARQTVANGNVDAPGNQ*
Prot80	NC_005230.1_80	cas1	3	CAS-III-D	adaptation	337	MTSIYLTEPGTKVSYHNQQLQIKQKSRQVITRLAEIDLLVLFPGVQLTDVAIAVLMDQGIETIFLRRDGQFRGRLQGQFATNPLTRIAQYRVLDSTFGTALAQRLILGKVTNQRAILQRRHRDTGKKNNALAEAIDLIGAYRLSLRSGLGNSSRDQLMGIEGICAKHYYQVFQFCLPEGWSFTGRNRRPPKDPVNALLSWGYGVLLARVFSAIVQAGLDPYLGFFHATQPYRPNLALDLMEEFRPVVVDQAIVRLLRSGILDPLDFEPSYDGLGIWLGITAKKLFLTELESILQTSFLYSPQSRRLKLQQIILEQARCLGRCCLESSLDYEPFTLS*
Prot81	NC_005230.1_81	cas2	3	CAS-III-D	adaptation	94	MDFWLVCYDVRDDKRRRKLAKLLEQRCQRVQYSVFECPLPEKVLTDLLHRRWLKELNLKEDSLRAYPLQRQSRSQAKIFGSPDLYEPPDFLIL*

CAS Protein Sequence for selection from above

To search for conserved domains within the protein, you can copy and paste its sequence to the CD-search of NCBI.
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service.

When using CRISPRloci please cite :

Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem ̈Öztürk, Victor A. Padilha, Danilo S. Sanches, Andre C.P.L.F. de Carvalho and Rolf Backofen
CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems
Nucleic Acids Research, 2021.
Alexander Mitrofanov, Omer S. Alkhnbashi, Sergey A. Shmakov, Kira S. Makarova, Eugene V. Koonin, and Rolf Backofen
CRISPRidentify: identification of CRISPR arrays using machine learning approach
Nucleic Acids Research, 49(4), e20, 2021.
Victor A. Padilha, Omer S. Alkhnbashi, Van Dinh Tran, Shiraz A. Shah, Andre C.P.L. de Carvalho and Rolf Backofen
Casboundary: automated definition of integral Cas cassettes
Bioinformatics, 2021.
Victor A. Padilha, Omer S. Alkhnbashi, Shiraz A. Shah, Andre C.P.L.F. de Carvalho and Rolf Backofen
CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
Gigascience, 9(6), 2020.
Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.

Results are computed with CRISPRloci version 1.1.0

Main Menu

Freiburg RNA Tools

Interaction Prediction

Seq-Str Alignment

CRISPR

Sequence Design

Splicing

SNP & Mutation

Classification

Gene set extension

MoDPepInt Server

CPSP-Tools Server

Galaxy-FR

CMV server

Teaching