Freiburg RNA Tools
metaMIR - Results
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metaMIR 5382027

Input and runtime details for job 5382027 (precomputed example)

Input

? List of genes analyzedBMP2 BMP4 BMP7 BMPR1A BMPR2 MYC NOG SMAD1 SMAD2 SMAD3 SMAD4 TGFB1 TGFB2 TGFB3 TGFBR1 TGFBR2 TGFBR3 -NF1 -NF2 -PTEN -TP53 -CHD5 -FOXD3
? Minimum number of genes per cluster5
? Maximum number of genes per cluster15
? Minimum score to return1.1

Job ID 5382027 (server version 4.3.0)

?Job Submitted & Queued@ Mon Aug 08 10:19:27 CEST 2016
?Processing Started@ Mon Aug 08 10:19:39 CEST 2016
?metaMIR Finished & Post-Processing@ Mon Aug 08 10:20:31 CEST 2016
?Job Completed@ Mon Aug 08 10:20:32 CEST 2016
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=5382027&toolName=metaMIR ( 30 days expiry )

The job description you specified

example3

? Output download complete results [zip]

Result table

Select rows: 1-4 all
Sort by selecting a column name
miRNA Final Score Positive Combo Positive Score Positive Group Positive List
hsa-miR-302a-5p 2.932 BMP2,BMPR2,MYC,SMAD1,SMAD2,SMAD4,TGFB1,TGFB2 2.507 8 2.39
hsa-miR-1285-5p 2.14 BMPR1A,BMPR2,TGFB2,TGFB3,TGFBR1,TGFBR2,TGFBR3 2.084 7 2.14
hsa-miR-4308 2.611 BMP4,BMPR2,SMAD1,SMAD3,TGFB2,TGFB3,TGFBR1,TGFBR3 1.981 8 2.17
hsa-miR-548az-5p 1.142 BMP4,BMPR2,MYC,SMAD1,SMAD4,TGFBR3 1.117 6 1.14
Rows: 1-4 all

Result table - repPos

Select rows: 1-10 11-17 all
Sort by selecting a column name
Gene name Rep
BMP2 100
BMP7 100
BMPR1A 100
BMPR2 100
MYC 100
SMAD2 100
SMAD3 100
SMAD4 100
TGFB2 100
TGFB3 100
Rows: 1-10 11-17 all

Result table - clusterPos

Select rows: 1-10 11-20 21-21 all
Sort by selecting a column name
Gene 1 Inter Gene 2 Norm
BMP2 pp BMP7 7.5
BMPR1A pp BMPR2 8.5
MYC pp NOG 6
SMAD1 pp SMAD2 7.5
SMAD3 pp SMAD4 8.5
TGFB2 pp TGFB3 8.5
TGFBR1 pp TGFBR2 8.5
TGFBR3 pp BMP2 8.5
BMP7 pp BMPR1A 8.5
BMPR2 pp MYC 8.5
Rows: 1-10 11-20 21-21 all

Job resubmission

Use the following button if you want to resubmit the job with altered input or parameterization:
Feeds the job parameters to the input page to resubmit the job.

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Results are computed with metaMIR version 1.0.0 using R 3.2.1