Freiburg RNA Tools
NIPU - Results
BIF
IFF
NIPU 6263042

Input and runtime details for job 6263042 (precomputed example)

Sequence Parameters

? RNA sequence 1aatgtaatttaatttccattttctttttagAGCAGTATACAAAGATGCTGATTTGTATTTATTAGACTCTCCTTTTGGATACCTAGATGTTTTAACAGAAAAAGAAATATTTGAAAGgtatgttctttgaataccttacttataatg
? RNA sequence 2not provided

Job ID 6263042 (server version 1.0.1)

?Job Submitted & Queued@ Wed Feb 10 21:01:21 CET 2016
?Processing Started@ Wed Feb 10 21:01:35 CET 2016
?NIPU Finished & Post-Processing@ Wed Feb 10 21:03:22 CET 2016
?Job Completed@ Wed Feb 10 21:03:22 CET 2016
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=6263042&toolName=NIPU ( 30 days expiry )

The job description you specified

human CFTR exon 12

? Output download complete results [zip]

The first plot shows the NI scores for the sequence(s), the second plot the PU values.

PU values
>sequence1 PU values
30 0.0783304043832141
31 0.0431664051499234
32 0.0176143248965022
33 0.0169539285537725
34 0.0213604349755291
35 0.0230914614900229
36 0.0585931386319384
37 0.0714377791887838
38 0.624850638370001
39 0.046142430623903
40 0.00328057923148402
41 0.00148668477897094
42 0.00464989465215482
43 0.290456529962327
44 0.349142080993944
45 0.405116491124025
46 0.00768269613005879
47 0.00151464066660437
48 0.360080625147205
49 0.00147988972917442
50 0.0705511023695318
51 0.0755528920481577
52 0.380087848299039
53 0.399468797803478
54 0.364209158808927
55 0.0150524485008915
56 0.0118475720994833
57 0.0240942218111436
58 0.048387727874362
59 0.105644663501342
60 0.140947804656133
61 0.158938420127321
62 0.141594344763154
63 0.104657958486272
64 0.0200565687445861
65 0.625850205063126
66 0.0167348429982687
67 0.0131283953986514
68 0.0084873049726173
69 0.00812821089352846
70 0.00925508088949524
71 0.00466895255102122
72 0.00365788886756031
73 0.00467054612729379
74 0.00671170407564266
75 0.00736319131640338
76 0.00815464705255216
77 0.0131677374625836
78 0.0861286799635236
79 0.314306159269485
80 0.278530616436284
81 0.313515863323213
82 0.276677996684418
83 0.206161045437306
84 0.16647808158481
85 0.138561053580828
86 0.125637853379351
87 0.128471643021374
88 0.119362168261444
89 0.115380341228987
90 0.0840864960550092
91 0.0797170628660765
92 0.0934601969811399
93 0.932262699767642
94 0.963633336297469
95 0.978529110790936
96 0.977686978975432
97 0.966568699071629
98 0.0961947774759214
99 0.0993360832710913
100 0.150869032744738
101 0.199389654250032
102 0.198162400426831
103 0.186505916476345
104 0.106114480603923
105 0.0769423047244245
106 0.0542539324476271
107 0.0399624096096205
108 0.0440337504516178
109 0.0691049185656729
110 0.0869799959307273
111 0.0582967815590374


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Results are computed with NIPU version 1.0.1 using Vienna RNA package v2.1.8