The following plots provide insights into the overall RNA-RNA interaction
abundance. To this end, a minimal energy profile is provided for both
sequences of each query-target pair considered. It visualizes for a
given pair of sequences for each sequence position the minimal
energy of any RNA-RNA interaction that can be formed between these two RNAs.
Furthermore, a combined plot that visualizes the minimal energy for
each intermolecular index pair is provided in a heatmap style to track
whether or not alternative interactions can be formed exclusively
(overlapping regions) or in conjunction.
Note, since IntaRNA uses a heuristic to enable the low runtime,
the provided energies are (close) upper bounds. Note further, only
RNA-RNA interactions featuring a seed (according to the user parameters)
Select a query-target sequence index combination for visualization:
Use the following button if you want to resubmit the job with
altered input or parameterization: