GLASSgo (GLobal Automated sRNA Search go) combines iterative BLAST searches, pairwise identity filtering, and structure based clustering in an automated prediction pipeline to find sRNA homologs from scratch. The web server provides predefined parameter sets for a non-expert usage as well as enables a manual setup of the query parameters. The returned GLASSgo result is in FASTA format, whereby the first entry represents the input sequence.

Published precomputed results for IsaR1 from PCC6803, IsaR1 from PCC6803 (adapted parameters), and IsaR1 from PCC7424 using GLASSgo v1.5.0.

For articles describing the tool and webserver refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

• Steffen C. Lott, Richard A Schäfer, Martin Mann, Rolf Backofen, Wolfgang R Hess, Bjoern Voss, Jens Georg
  GLASSgo - Automated and reliable detection of sRNA homologs from a single input sequences
  Frontiers in Genetics, 9, 124, 2018.
  
• Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
  Freiburg RNA tools: a central online resource for RNA-focused research and teaching
  Nucleic Acids Research, 46(W1), W25-W29, 2018.