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Freiburg RNA Tools

Interaction Prediction

• CopraRNA
  sRNA Targeting
• IntaRNA
  RNA-RNA interaction
• GLASSgo
  sRNA Homolog Finder
• metaMIR
  Human miRNA Interaction

Seq-Str Alignment

• LocARNA
  
• CARNA
  
• MARNA
  
• ExpaRNA
  

CRISPR

• CRISPRmap
  
• CRISPRloci
  

Sequence Design

• AntaRNA
  
• INFORNA
  
• SECISDesign
  

Splicing

• NIPU
  

SNP & Mutation

• CopomuS
  
• MutaRNA
  
• RaSE
  

Classification

• BrainDead
  

Gene set extension

• DiGI
  

MoDPepInt Server

• Domain Interaction

CPSP-Tools Server

• HP Lattice Proteins

Galaxy-FR

• RNA tool workflows
  and infrastructure

CMV server

• model visualization
  and comparison

Teaching

• RNA algorithms