| 1 |
0 |
0 |
b3209 |
elbB |
-118.30 |
0.000000 |
1 -- 83 |
1 -- 83 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
______________1__________________________________________________________________________________84\n______________|__________________________________________________________________________________|\n___________5'-___________________________________________________________________________________GCAGU...GUG-3'\n______________GCGCCAACACCAGGGAAAUCUUGGCUGCGCCGUAAAUUAUUAUGAUGAGUUACAAGGGCACAGCACUGUUUUUCAGGCCGCAC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________CGCGGUUGUGGUCCCUUUAGAACCGACGCGGCAUUUAAUAAUACUACUCAAUGUUCCCGUGUCGUGACAAAAAGUCCGGCGUG\n3'-UUU...UAUGA___________________________________________________________________________________-5'\n_____________|__________________________________________________________________________________|\n_____________84_________________________________________________________________________________1\n |
77 -- 83 |
1 -- 7 |
-173.12 kcal/mol |
26.3528 kcal/mol |
28.4683 kcal/mol |
1 84@LB@ | |@LB@ 5'- GCAGU...GUG-3'@LB@ GCGCCAACACCAGGGAAAUCUUGGCUGCGCCGUAAAUUAUUAUGAUGAGUUACAAGGGCACAGCACUGUUUUUCAGGCCGCAC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ CGCGGUUGUGGUCCCUUUAGAACCGACGCGGCAUUUAAUAAUACUACUCAAUGUUCCCGUGUCGUGACAAAAAGUCCGGCGUG@LB@3'-UUU...UAUGA -5'@LB@ | |@LB@ 84 1@LB@@LB@@LB@Energy -118.30 kcal/mol@LB@Hybridization Energy -173.12 kcal/mol@LB@Unfolding Energy - mRNA 26.3528 kcal/mol@LB@Unfolding Energy - sRNA 28.4683 kcal/mol@LB@@LB@Position - mRNA 1 -- 83@LB@Position - sRNA 1 -- 83@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
1.572e-09 |
2.767e-06 |
b3749 |
rbsA |
-20.95 |
0.000983 |
43 -- 64 |
65 -- 86 |
D-ribose ABC transporter ATPase |
|
_____________42_____________________65\n_____________|______________________|\n5'-UAA...GAGCA_____AAA______________ACCAU...UGG-3'\n______________GCUGC___AACACCAGGGAAAU\n______________:||||___||||||||||||||\n______________UGACG___UUGUGGUCCCUUUA\n3'-UUU...GCUUA_____CGG______________GAACC...GUG-5'\n_____________|______________________|\n_____________87_____________________64\n |
58 -- 64 |
65 -- 71 |
-31.8331 kcal/mol |
3.49898 kcal/mol |
7.38332 kcal/mol |
42 65@LB@ | |@LB@5'-UAA...GAGCA AAA ACCAU...UGG-3'@LB@ GCUGC AACACCAGGGAAAU@LB@ :|||| ||||||||||||||@LB@ UGACG UUGUGGUCCCUUUA@LB@3'-UUU...GCUUA CGG GAACC...GUG-5'@LB@ | |@LB@ 87 64@LB@@LB@@LB@Energy -20.95 kcal/mol@LB@Hybridization Energy -31.8331 kcal/mol@LB@Unfolding Energy - mRNA 3.49898 kcal/mol@LB@Unfolding Energy - sRNA 7.38332 kcal/mol@LB@@LB@Position - mRNA 43 -- 64@LB@Position - sRNA 65 -- 86@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 12 |
0.0004488 |
0.1198 |
b3133 |
agaV |
-20.63 |
0.001136 |
94 -- 118 |
64 -- 86 |
N-acetylgalactosamine-specific enzyme IIB component of PTS |
|
_____________93________________________119\n_____________|_________________________|\n5'-UCA...GGCGA_____A__________C_____C__AUUAU...UAG-3'\n______________GCUGC_GCCAACGCCA_GGGAA_UC\n______________:||||_||||||:|||_|||||_||\n______________UGACG_CGGUUGUGGU_CCCUU_AG\n3'-UUU...GCUUA______________________U__AACCG...GUG-5'\n_____________|_________________________|\n_____________87________________________63\n |
103 -- 109 |
72 -- 78 |
-36.2121 kcal/mol |
8.19626 kcal/mol |
7.38435 kcal/mol |
93 119@LB@ | |@LB@5'-UCA...GGCGA A C C AUUAU...UAG-3'@LB@ GCUGC GCCAACGCCA GGGAA UC@LB@ :|||| ||||||:||| ||||| ||@LB@ UGACG CGGUUGUGGU CCCUU AG@LB@3'-UUU...GCUUA U AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -20.63 kcal/mol@LB@Hybridization Energy -36.2121 kcal/mol@LB@Unfolding Energy - mRNA 8.19626 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 94 -- 118@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 4 |
3.471e-06 |
0.003055 |
b2099 |
yegU |
-19.38 |
0.001997 |
173 -- 198 |
64 -- 88 |
ADP-ribosylglycohydrolase family protein |
|
_____________172________________________199\n_____________|__________________________|\n5'-GUG...UCGCG_______________AA_________AAAUG...CAC-3'\n______________AUAUUGCGUUGACAC__GGGGAAGUU\n______________|||:||||:::||||__:|||||:|:\n______________UAUGACGCGGUUGUG__UCCCUUUAG\n3'-UUU...GCGCU_______________G__________AACCG...GUG-5'\n_____________|__________________________|\n_____________89_________________________63\n |
192 -- 198 |
64 -- 70 |
-32.1286 kcal/mol |
5.35868 kcal/mol |
7.38555 kcal/mol |
172 199@LB@ | |@LB@5'-GUG...UCGCG AA AAAUG...CAC-3'@LB@ AUAUUGCGUUGACAC GGGGAAGUU@LB@ |||:||||:::|||| :|||||:|:@LB@ UAUGACGCGGUUGUG UCCCUUUAG@LB@3'-UUU...GCGCU G AACCG...GUG-5'@LB@ | |@LB@ 89 63@LB@@LB@@LB@Energy -19.38 kcal/mol@LB@Hybridization Energy -32.1286 kcal/mol@LB@Unfolding Energy - mRNA 5.35868 kcal/mol@LB@Unfolding Energy - sRNA 7.38555 kcal/mol@LB@@LB@Position - mRNA 173 -- 198@LB@Position - sRNA 64 -- 88@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 97 |
0.005188 |
0.1855 |
b3060 |
ttdR |
-16.80 |
0.006462 |
125 -- 147 |
67 -- 90 |
transcriptional activator of ttdABT |
b1799 |
_____________124______________________148\n_____________|________________________|\n5'-UCC...AGAAU________________G_______UGGCA...CGC-3'\n______________GAAUAUUGCGCCAG_A_CAGGGAA\n______________|||||:|||||||:_|_|||||||\n______________CUUAUGACGCGGUU_U_GUCCCUU\n3'-UUU...ACGCG______________G_G_______UAGAA...GUG-5'\n_____________|________________________|\n_____________91_______________________66\n |
141 -- 147 |
67 -- 73 |
-34.0784 kcal/mol |
7.10756 kcal/mol |
10.1694 kcal/mol |
124 148@LB@ | |@LB@5'-UCC...AGAAU G UGGCA...CGC-3'@LB@ GAAUAUUGCGCCAG A CAGGGAA@LB@ |||||:|||||||: | |||||||@LB@ CUUAUGACGCGGUU U GUCCCUU@LB@3'-UUU...ACGCG G G UAGAA...GUG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -34.0784 kcal/mol@LB@Unfolding Energy - mRNA 7.10756 kcal/mol@LB@Unfolding Energy - sRNA 10.1694 kcal/mol@LB@@LB@Position - mRNA 125 -- 147@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 110 |
0.005921 |
0.1855 |
b0156 |
erpA |
-16.74 |
0.006653 |
106 -- 166 |
29 -- 94 |
iron-sulfur cluster insertion protein |
|
_____________105______________________________________________________________________167\n_____________|________________________________________________________________________|\n5'-UAG...AGCCA___A______U__AA_GA__________UAUU____AA_______________________________G__UUUGC...UAC-3'\n______________GCG_GAAUAC_UG__C__AAUACCAGGG____AGAU__UGGC_________GAUUAUUAU__UGGGUUA_AA\n______________|||_||||||_||__|__||:|||||||____|:||__||||_________:||||||||__||:||||_||\n______________CGC_CUUAUG_AC__G__UUGUGGUCCC____UUUA__ACCG_________UUAAUAAUA__ACUCAAU_UU\n3'-UUU...CCCCA___G_________GC_G___________________GA____ACGCGGCAU_________CU_______G__CCCGU...GUG-5'\n_____________|________________________________________________________________________|\n_____________95_______________________________________________________________________28\n |
157 -- 163 |
32 -- 38 |
-45.8064 kcal/mol |
11.5894 kcal/mol |
17.4809 kcal/mol |
105 167@LB@ | |@LB@5'-UAG...AGCCA A U AA GA UAUU AA G UUUGC...UAC-3'@LB@ GCG GAAUAC UG C AAUACCAGGG AGAU UGGC GAUUAUUAU UGGGUUA AA@LB@ ||| |||||| || | ||:||||||| |:|| |||| :|||||||| ||:|||| ||@LB@ CGC CUUAUG AC G UUGUGGUCCC UUUA ACCG UUAAUAAUA ACUCAAU UU@LB@3'-UUU...CCCCA G GC G GA ACGCGGCAU CU G CCCGU...GUG-5'@LB@ | |@LB@ 95 28@LB@@LB@@LB@Energy -16.74 kcal/mol@LB@Hybridization Energy -45.8064 kcal/mol@LB@Unfolding Energy - mRNA 11.5894 kcal/mol@LB@Unfolding Energy - sRNA 17.4809 kcal/mol@LB@@LB@Position - mRNA 106 -- 166@LB@Position - sRNA 29 -- 94@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 15 |
0.000767 |
0.1666 |
b2497 |
uraA |
-16.56 |
0.007223 |
161 -- 232 |
28 -- 90 |
uracil permease |
|
_____________160_________________________________________________________________________233\n_____________|___________________________________________________________________________|\n5'-AGC...UUUUU_____AA_____UAU_____AUAAUA___A___U___A__AU_AC________C_____CGG_______GA____ACCGC...UCC-3'\n______________GAGUA__GCGCC___AACAC______CAG_GGA_AAU_CU__G__GCGCCGUG___UAU___GGUGAGU___AAG\n______________||:||__|||||___|||||______|||_|||_|||_||__|__|||||||:___|||___|:|||||___|||\n______________CUUAU__CGCGG___UUGUG______GUC_CCU_UUA_GA__C__CGCGGCAU___AUA___CUACUCA___UUC\n3'-UUU...ACGCG_____GA_________________________________AC_GA________UUA___AUA_______AUG___CCGUG...GUG-5'\n_____________|___________________________________________________________________________|\n_____________91__________________________________________________________________________27\n |
221 -- 227 |
34 -- 40 |
-48.784 kcal/mol |
15.1604 kcal/mol |
17.0677 kcal/mol |
160 233@LB@ | |@LB@5'-AGC...UUUUU AA UAU AUAAUA A U A AU AC C CGG GA ACCGC...UCC-3'@LB@ GAGUA GCGCC AACAC CAG GGA AAU CU G GCGCCGUG UAU GGUGAGU AAG@LB@ ||:|| ||||| ||||| ||| ||| ||| || | |||||||: ||| |:||||| |||@LB@ CUUAU CGCGG UUGUG GUC CCU UUA GA C CGCGGCAU AUA CUACUCA UUC@LB@3'-UUU...ACGCG GA AC GA UUA AUA AUG CCGUG...GUG-5'@LB@ | |@LB@ 91 27@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -48.784 kcal/mol@LB@Unfolding Energy - mRNA 15.1604 kcal/mol@LB@Unfolding Energy - sRNA 17.0677 kcal/mol@LB@@LB@Position - mRNA 161 -- 232@LB@Position - sRNA 28 -- 90@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 47 |
0.002359 |
0.1727 |
b1520 |
yneE |
-16.33 |
0.007995 |
225 -- 237 |
50 -- 62 |
bestrophin family putative inner membrane protein |
|
_____________224___________238\n_____________|_____________|\n5'-CGU...AACAC_____________UUUUU...UCU-3'\n______________UGGCUGCGCCGUA\n______________|||||||||||||\n______________ACCGACGCGGCAU\n3'-UUU...UUAGA_____________UUAAU...GUG-5'\n_____________|_____________|\n_____________63____________49\n |
231 -- 237 |
50 -- 56 |
-27.5123 kcal/mol |
5.30923 kcal/mol |
5.87004 kcal/mol |
224 238@LB@ | |@LB@5'-CGU...AACAC UUUUU...UCU-3'@LB@ UGGCUGCGCCGUA@LB@ |||||||||||||@LB@ ACCGACGCGGCAU@LB@3'-UUU...UUAGA UUAAU...GUG-5'@LB@ | |@LB@ 63 49@LB@@LB@@LB@Energy -16.33 kcal/mol@LB@Hybridization Energy -27.5123 kcal/mol@LB@Unfolding Energy - mRNA 5.30923 kcal/mol@LB@Unfolding Energy - sRNA 5.87004 kcal/mol@LB@@LB@Position - mRNA 225 -- 237@LB@Position - sRNA 50 -- 62@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 24 |
0.001457 |
0.1727 |
b0424 |
yajL |
-16.26 |
0.008266 |
79 -- 97 |
64 -- 86 |
oxidative-stress-resistance chaperone |
|
_____________78______________________98\n_____________|_______________________|\n5'-AGA...CGCGC_______________________GACUA...CCA-3'\n______________GCUGCGCCA_CACU___GAAAUC\n______________:||||||||_|||:___||||||\n______________UGACGCGGU_GUGG___CUUUAG\n3'-UUU...GCUUA_________U____UCC______AACCG...GUG-5'\n_____________|_______________________|\n_____________87______________________63\n |
81 -- 87 |
78 -- 84 |
-26.9283 kcal/mol |
3.28429 kcal/mol |
7.38435 kcal/mol |
78 98@LB@ | |@LB@5'-AGA...CGCGC GACUA...CCA-3'@LB@ GCUGCGCCA CACU GAAAUC@LB@ :|||||||| |||: ||||||@LB@ UGACGCGGU GUGG CUUUAG@LB@3'-UUU...GCUUA U UCC AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -26.9283 kcal/mol@LB@Unfolding Energy - mRNA 3.28429 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 79 -- 97@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 108 |
0.005783 |
0.1855 |
b3951 |
pflD |
-15.90 |
0.009733 |
233 -- 258 |
63 -- 86 |
putative glycine radical domain-containing pyruvate formate-lyase |
b0823 |
_____________232________________________259\n_____________|__________________________|\n5'-GAU...ACUGC_____UU_________C_U_______CGCUG...AAA-3'\n______________ACUGU__GCCAAUACC_G_GAAAUCU\n______________||||:__|||||:|||_|_|||||||\n______________UGACG__CGGUUGUGG_C_CUUUAGA\n3'-UUU...GCUUA________________U_C_______ACCGA...GUG-5'\n_____________|__________________________|\n_____________87_________________________62\n |
252 -- 258 |
63 -- 69 |
-27.9307 kcal/mol |
4.64309 kcal/mol |
7.38602 kcal/mol |
232 259@LB@ | |@LB@5'-GAU...ACUGC UU C U CGCUG...AAA-3'@LB@ ACUGU GCCAAUACC G GAAAUCU@LB@ ||||: |||||:||| | |||||||@LB@ UGACG CGGUUGUGG C CUUUAGA@LB@3'-UUU...GCUUA U C ACCGA...GUG-5'@LB@ | |@LB@ 87 62@LB@@LB@@LB@Energy -15.90 kcal/mol@LB@Hybridization Energy -27.9307 kcal/mol@LB@Unfolding Energy - mRNA 4.64309 kcal/mol@LB@Unfolding Energy - sRNA 7.38602 kcal/mol@LB@@LB@Position - mRNA 233 -- 258@LB@Position - sRNA 63 -- 86@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 63 -- 69@LB@ |
