| 100 |
0.00495 |
0.1728 |
stm1879 |
ptrB |
-19.83 |
0.018631 |
144 -- 223 |
40 -- 120 |
oligopeptidase B |
|
_____________143____________________________________________224\n_____________|______________________________________________|\n5'-AAG...UAUAA_________________AAGAAAAA_____A___U___________AAUCG...AGC-3'\n______________CAAAUAU__UAACGCAA________ACGAC_UGU__GCCAAAAGCC\n______________||||:|:__:|||:|||________||:||_:||__||||||||||\n______________GUUUGUG__GUUGUGUU________UGUUG_GCA__CGGUUUUCGG\n3'-UUU...UUAAC_______UU________GUAG_____________UU__________GUAGU...UCA-5'\n_____________|______________________________________________|\n_____________121____________________________________________39\n |
209 -- 215 |
49 -- 55 |
-34.4525 kcal/mol |
3.62291 kcal/mol |
15.2208 kcal/mol |
143 224@LB@ | |@LB@5'-AAG...UAUAA AAGAAAAA A U AAUCG...AGC-3'@LB@ CAAAUAU UAACGCAA ACGAC UGU GCCAAAAGCC@LB@ ||||:|: :|||:||| ||:|| :|| ||||||||||@LB@ GUUUGUG GUUGUGUU UGUUG GCA CGGUUUUCGG@LB@3'-UUU...UUAAC UU GUAG UU GUAGU...UCA-5'@LB@ | |@LB@ 121 39@LB@@LB@@LB@Energy -19.83 kcal/mol@LB@Hybridization Energy -34.4525 kcal/mol@LB@Unfolding Energy - mRNA 3.62291 kcal/mol@LB@Unfolding Energy - sRNA 15.2208 kcal/mol@LB@@LB@Position - mRNA 144 -- 223@LB@Position - sRNA 40 -- 120@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 134 |
0.006725 |
0.1774 |
stm0546 |
fimD |
-17.45 |
0.046766 |
176 -- 200 |
37 -- 60 |
outer membrane usher protein |
stm0301 stm0175 stm4593 stm3638 stm0023 |
_____________175_____________201\n_____________|_______________|\n5'-UCA...AAGCC______G________GAAGA...CGA-3'\n______________ACACGA_AACACGAU\n______________||||:|_|||||:|:\n______________UGUGUU_UUGUGUUG\n3'-UUU...ACGUU______G________UAGUG...UCA-5'\n_____________|_______________|\n_____________61______________36\n |
196 -- 202 |
72 -- 78 |
-17.1314 kcal/mol |
2.16166 kcal/mol |
3.50587 kcal/mol |
175 201@LB@ | |@LB@5'-UCA...AAGCC G GAAGA...CGA-3'@LB@ ACACGA AACACGAU@LB@ ||||:| |||||:|:@LB@ UGUGUU UUGUGUUG@LB@3'-UUU...ACGUU G UAGUG...UCA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -17.45 kcal/mol@LB@Hybridization Energy -17.1314 kcal/mol@LB@Unfolding Energy - mRNA 2.16166 kcal/mol@LB@Unfolding Energy - sRNA 3.50587 kcal/mol@LB@@LB@Position - mRNA 176 -- 200@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 112 |
0.005549 |
0.1728 |
stm0602 |
ybdH |
-14.01 |
0.169356 |
159 -- 193 |
39 -- 79 |
oxidoreductase |
|
_____________158_____________194\n_____________|_______________|\n5'-GCG...CCCUA_G_____________GAACC...AGC-3'\n______________A_GACAACACAACAU\n______________|_:||||||||||||\n______________U_UUGUUGUGUUGUA\n3'-UUU...GUUUG_G_____________GUGUU...UCA-5'\n_____________|_______________|\n_____________80______________38\n |
196 -- 202 |
70 -- 76 |
-18.8338 kcal/mol |
1.20586 kcal/mol |
3.77892 kcal/mol |
158 194@LB@ | |@LB@5'-GCG...CCCUA G GAACC...AGC-3'@LB@ A GACAACACAACAU@LB@ | :||||||||||||@LB@ U UUGUUGUGUUGUA@LB@3'-UUU...GUUUG G GUGUU...UCA-5'@LB@ | |@LB@ 80 38@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -18.8338 kcal/mol@LB@Unfolding Energy - mRNA 1.20586 kcal/mol@LB@Unfolding Energy - sRNA 3.77892 kcal/mol@LB@@LB@Position - mRNA 159 -- 193@LB@Position - sRNA 39 -- 79@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 28 |
0.0007333 |
0.08814 |
stm0376 |
sbmA |
-15.26 |
0.107034 |
68 -- 102 |
55 -- 90 |
peptide transporter |
|
_____________67______________________________103\n_____________|_______________________________|\n5'-GCU...AGAAA_______UA____U______GUAG_______UGCCU...AUU-3'\n______________UGCGAAC__AGCG_CACAAC____GUCACAA\n______________|||:|||__|:|:_||||||____:||||||\n______________ACGUUUG__UUGU_GUGUUG____UAGUGUU\n3'-UUU...GGUUA_______UG____U_________________GGCAU...UCA-5'\n_____________|_______________________________|\n_____________91______________________________54\n |
99 -- 105 |
65 -- 71 |
-26.4432 kcal/mol |
7.11088 kcal/mol |
6.59083 kcal/mol |
67 103@LB@ | |@LB@5'-GCU...AGAAA UA U GUAG UGCCU...AUU-3'@LB@ UGCGAAC AGCG CACAAC GUCACAA@LB@ |||:||| |:|: |||||| :||||||@LB@ ACGUUUG UUGU GUGUUG UAGUGUU@LB@3'-UUU...GGUUA UG U GGCAU...UCA-5'@LB@ | |@LB@ 91 54@LB@@LB@@LB@Energy -15.26 kcal/mol@LB@Hybridization Energy -26.4432 kcal/mol@LB@Unfolding Energy - mRNA 7.11088 kcal/mol@LB@Unfolding Energy - sRNA 6.59083 kcal/mol@LB@@LB@Position - mRNA 68 -- 102@LB@Position - sRNA 55 -- 90@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 67 |
0.003193 |
0.1596 |
stm0122 |
ftsI |
-11.87 |
0.349270 |
199 -- 241 |
52 -- 90 |
peptidoglycan glycosyltransferase FtsI |
|
_____________198_______________________242\n_____________|_________________________|\n5'-GUU...CGCGA____UUG_____UG___________CUGAU...UGG-3'\n______________UGCA___GACAU__AAUGGCGCAAC\n______________||||___:|||:__||:::|:||||\n______________ACGU___UUGUG__UUGUUGUGUUG\n3'-UUU...GGUUA_________________________UAGUG...UCA-5'\n_____________|_________________________|\n_____________91________________________51\n |
62 -- 68 |
72 -- 78 |
-17.673 kcal/mol |
4.85802 kcal/mol |
3.80548 kcal/mol |
198 242@LB@ | |@LB@5'-GUU...CGCGA UUG UG CUGAU...UGG-3'@LB@ UGCA GACAU AAUGGCGCAAC@LB@ |||| :|||: ||:::|:||||@LB@ ACGU UUGUG UUGUUGUGUUG@LB@3'-UUU...GGUUA UAGUG...UCA-5'@LB@ | |@LB@ 91 51@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -17.673 kcal/mol@LB@Unfolding Energy - mRNA 4.85802 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 199 -- 241@LB@Position - sRNA 52 -- 90@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 184 |
0.01016 |
0.1966 |
stm1690 |
pspA |
-15.34 |
0.103900 |
116 -- 183 |
38 -- 113 |
phage shock protein PspA |
|
_____________115____________________________________________________184\n_____________|______________________________________________________|\n5'-GCC...UAUCA_____A____AAGU_G___C__A_______UUAAU__________G________CCGUU...UUC-3'\n______________GUGGU_UGAA____U_GCA_GC_AAUUGUA_____CAC_AUAGCA_GGCAUCGC\n______________|||||_||||____|_|||_:|_|||||:|_____|||_|:|:||_::||||:|\n______________CACCA_ACUU____A_CGU_UG_UUAACGU_____GUG_UGUUGU_UUGUAGUG\n3'-UUU...GAUGG_____G_________G___C__G_______UU______U______G________UUGGC...UCA-5'\n_____________|______________________________________________________|\n_____________114____________________________________________________37\n |
162 -- 168 |
67 -- 73 |
-39.4413 kcal/mol |
11.996 kcal/mol |
15.147 kcal/mol |
115 184@LB@ | |@LB@5'-GCC...UAUCA A AAGU G C A UUAAU G CCGUU...UUC-3'@LB@ GUGGU UGAA U GCA GC AAUUGUA CAC AUAGCA GGCAUCGC@LB@ ||||| |||| | ||| :| |||||:| ||| |:|:|| ::||||:|@LB@ CACCA ACUU A CGU UG UUAACGU GUG UGUUGU UUGUAGUG@LB@3'-UUU...GAUGG G G C G UU U G UUGGC...UCA-5'@LB@ | |@LB@ 114 37@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -39.4413 kcal/mol@LB@Unfolding Energy - mRNA 11.996 kcal/mol@LB@Unfolding Energy - sRNA 15.147 kcal/mol@LB@@LB@Position - mRNA 116 -- 183@LB@Position - sRNA 38 -- 113@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 58 |
0.002307 |
0.14 |
stm2234 |
N/A |
-13.92 |
0.174542 |
131 -- 196 |
38 -- 89 |
phage tail protein |
stm2705 stm2233 |
_____________130______197\n_____________|________|\n5'-CUG...UACAC________AUCCA...CAG-3'\n______________CAGACAGG\n______________||||||||\n______________GUCUGUCC\n3'-UUU...UACCU________CAUUU...UCA-5'\n_____________|________|\n_____________90_______37\n |
132 -- 138 |
153 -- 159 |
-13.9425 kcal/mol |
2.61206 kcal/mol |
2.72972 kcal/mol |
130 197@LB@ | |@LB@5'-CUG...UACAC AUCCA...CAG-3'@LB@ CAGACAGG@LB@ ||||||||@LB@ GUCUGUCC@LB@3'-UUU...UACCU CAUUU...UCA-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -13.9425 kcal/mol@LB@Unfolding Energy - mRNA 2.61206 kcal/mol@LB@Unfolding Energy - sRNA 2.72972 kcal/mol@LB@@LB@Position - mRNA 131 -- 196@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 118 |
0.005761 |
0.1738 |
stm1840 |
yobG |
-17.14 |
0.052758 |
234 -- 267 |
153 -- 188 |
PhoP regulon feedback inhibition protein MgrB |
|
_____________233____________________________________________________________________________________268\n_____________|______________________________________________________________________________________|\n5'-ACA...AGAGU___________AUUUCGAU____C_U_____GC________GGUA______U___U_____UGU________GUGUU_________GUGCG...AAU-3'\n______________GGAGUGAAAAA________GGGU_G_UCUCG__AUCGUGGU_______GUA_GCC_GUUGC___GGGCGCAG_____UAAUAUCAU\n______________|:|||||||||________||||_|_|||||__|:||||||_______|:|_:||_:||||___:::|:||:_____:||:||||:\n______________CUUCACUUUUU________CCCA_C_AGAGC__UGGCACCA_______CGU_UGG_UAACG___UUUGUGUU_____GUUGUAGUG\n3'-UUU...AUGUC_______________________U_______GA________GACUUAG___C___U________________GUUGU_________UUGGC...UCA-5'\n_____________|______________________________________________________________________________________|\n_____________189____________________________________________________________________________________152\n |
274 -- 280 |
67 -- 73 |
-62.0847 kcal/mol |
28.922 kcal/mol |
22.0106 kcal/mol |
233 268@LB@ | |@LB@5'-ACA...AGAGU AUUUCGAU C U GC GGUA U U UGU GUGUU GUGCG...AAU-3'@LB@ GGAGUGAAAAA GGGU G UCUCG AUCGUGGU GUA GCC GUUGC GGGCGCAG UAAUAUCAU@LB@ |:||||||||| |||| | ||||| |:|||||| |:| :|| :|||| :::|:||: :||:||||:@LB@ CUUCACUUUUU CCCA C AGAGC UGGCACCA CGU UGG UAACG UUUGUGUU GUUGUAGUG@LB@3'-UUU...AUGUC U GA GACUUAG C U GUUGU UUGGC...UCA-5'@LB@ | |@LB@ 189 152@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -62.0847 kcal/mol@LB@Unfolding Energy - mRNA 28.922 kcal/mol@LB@Unfolding Energy - sRNA 22.0106 kcal/mol@LB@@LB@Position - mRNA 234 -- 267@LB@Position - sRNA 153 -- 188@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 40 |
0.001409 |
0.1215 |
stm4578 |
serB |
-16.00 |
0.081343 |
27 -- 78 |
37 -- 87 |
phosphoserine phosphatase SerB |
|
_____________26___________________79\n_____________|____________________|\n5'-CUG...CAGUG________G___________GACUG...ACC-3'\n______________UG_AGACA_AACAAUACAAU\n______________||_|:|||_|||||:||||:\n______________AC_UUUGU_UUGUUGUGUUG\n3'-UUU...GGUUA__G_____G___________UAGUG...UCA-5'\n_____________|____________________|\n_____________88___________________36\n |
36 -- 42 |
72 -- 78 |
-19.1859 kcal/mol |
2.1479 kcal/mol |
3.80548 kcal/mol |
26 79@LB@ | |@LB@5'-CUG...CAGUG G GACUG...ACC-3'@LB@ UG AGACA AACAAUACAAU@LB@ || |:||| |||||:||||:@LB@ AC UUUGU UUGUUGUGUUG@LB@3'-UUU...GGUUA G G UAGUG...UCA-5'@LB@ | |@LB@ 88 36@LB@@LB@@LB@Energy -16.00 kcal/mol@LB@Hybridization Energy -19.1859 kcal/mol@LB@Unfolding Energy - mRNA 2.1479 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 27 -- 78@LB@Position - sRNA 37 -- 87@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 88 |
0.00402 |
0.1596 |
stm2651 |
yfiQ |
-16.02 |
0.080775 |
116 -- 159 |
50 -- 88 |
protein acetyltransferase |
|
_____________115__________________________160\n_____________|____________________________|\n5'-CAA...AGGAA__________UCCGGGA___________AUAAA...GUA-3'\n______________AAACGCAACA_______AACGUCACAGC\n______________||||:|||||_______|||:|||||:|\n______________UUUGUGUUGU_______UUGUAGUGUUG\n3'-UUU...UAACG__________UGUG______________GCAUU...UCA-5'\n_____________|____________________________|\n_____________89___________________________49\n |
137 -- 143 |
64 -- 70 |
-25.6269 kcal/mol |
4.45838 kcal/mol |
7.90699 kcal/mol |
115 160@LB@ | |@LB@5'-CAA...AGGAA UCCGGGA AUAAA...GUA-3'@LB@ AAACGCAACA AACGUCACAGC@LB@ ||||:||||| |||:|||||:|@LB@ UUUGUGUUGU UUGUAGUGUUG@LB@3'-UUU...UAACG UGUG GCAUU...UCA-5'@LB@ | |@LB@ 89 49@LB@@LB@@LB@Energy -16.02 kcal/mol@LB@Hybridization Energy -25.6269 kcal/mol@LB@Unfolding Energy - mRNA 4.45838 kcal/mol@LB@Unfolding Energy - sRNA 7.90699 kcal/mol@LB@@LB@Position - mRNA 116 -- 159@LB@Position - sRNA 50 -- 88@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 64 -- 70@LB@ |
