| 77 |
0.003608 |
0.1596 |
stm4473 |
yjgM |
-11.12 |
0.437983 |
252 -- 285 |
42 -- 82 |
GNAT family N-acetyltransferase |
|
_____________251________________286\n_____________|__________________|\n5'-AUU...CGCCG________CC___C____AUGCC...ACG-3'\n______________AAUCACUA___GC_GACA\n______________||||||||___:|_||||\n______________UUAGUGAU___UG_CUGU\n3'-UUU...UGUAA________ACC__U____CCCAU...UCA-5'\n_____________|__________________|\n_____________83_________________41\n |
240 -- 246 |
165 -- 171 |
-13.0222 kcal/mol |
3.39479 kcal/mol |
3.49149 kcal/mol |
251 286@LB@ | |@LB@5'-AUU...CGCCG CC C AUGCC...ACG-3'@LB@ AAUCACUA GC GACA@LB@ |||||||| :| ||||@LB@ UUAGUGAU UG CUGU@LB@3'-UUU...UGUAA ACC U CCCAU...UCA-5'@LB@ | |@LB@ 83 41@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -13.0222 kcal/mol@LB@Unfolding Energy - mRNA 3.39479 kcal/mol@LB@Unfolding Energy - sRNA 3.49149 kcal/mol@LB@@LB@Position - mRNA 252 -- 285@LB@Position - sRNA 42 -- 82@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 165 -- 171@LB@ |
| 146 |
0.007509 |
0.1831 |
stm1510 |
ydfH |
-14.80 |
0.126744 |
211 -- 261 |
32 -- 88 |
GntR family transcriptional regulator |
|
_____________210_____________________________________________________262\n_____________|_______________________________________________________|\n5'-UGA...AAAAA__AA____GAAU_____UCG___________UUAACCCU_______CUGU_____AGCAA...GCA-3'\n______________GU__GAAU____GACCG_____AAACGCAGC________ACACAGC____CAACC\n______________||__||||____||||:_____||||:||:|________|||||:|____|||||\n______________CA__CUUA____CUGGU_____UUUGUGUUG________UGUGUUG____GUUGG\n3'-UUU...GGCAC__GA____GCGU_____UAACG_________U______________UAGU_____CAUUC...UCA-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________31\n |
228 -- 234 |
72 -- 78 |
-34.0267 kcal/mol |
5.39256 kcal/mol |
17.9909 kcal/mol |
210 262@LB@ | |@LB@5'-UGA...AAAAA AA GAAU UCG UUAACCCU CUGU AGCAA...GCA-3'@LB@ GU GAAU GACCG AAACGCAGC ACACAGC CAACC@LB@ || |||| ||||: ||||:||:| |||||:| |||||@LB@ CA CUUA CUGGU UUUGUGUUG UGUGUUG GUUGG@LB@3'-UUU...GGCAC GA GCGU UAACG U UAGU CAUUC...UCA-5'@LB@ | |@LB@ 89 31@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -34.0267 kcal/mol@LB@Unfolding Energy - mRNA 5.39256 kcal/mol@LB@Unfolding Energy - sRNA 17.9909 kcal/mol@LB@@LB@Position - mRNA 211 -- 261@LB@Position - sRNA 32 -- 88@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 61 |
0.002902 |
0.1596 |
stm3567 |
livJ |
-18.03 |
0.037474 |
150 -- 196 |
40 -- 87 |
high-affinity branched-chain amino acid transporter |
|
_____________149_______________________197\n_____________|_________________________|\n5'-CGG...ACAAU_____C____________A______AGAAU...CCG-3'\n______________AACAC_ACAACACA_CGU_ACAACC\n______________|||||_||||||||_|:|_||||||\n______________UUGUG_UGUUGUGU_GUA_UGUUGG\n3'-UUU...AACGU_____U________U___G______CAUUC...UCA-5'\n_____________|_________________________|\n_____________88________________________39\n |
157 -- 163 |
74 -- 80 |
-27.1738 kcal/mol |
3.63117 kcal/mol |
8.28637 kcal/mol |
149 197@LB@ | |@LB@5'-CGG...ACAAU C A AGAAU...CCG-3'@LB@ AACAC ACAACACA CGU ACAACC@LB@ ||||| |||||||| |:| ||||||@LB@ UUGUG UGUUGUGU GUA UGUUGG@LB@3'-UUU...AACGU U U G CAUUC...UCA-5'@LB@ | |@LB@ 88 39@LB@@LB@@LB@Energy -18.03 kcal/mol@LB@Hybridization Energy -27.1738 kcal/mol@LB@Unfolding Energy - mRNA 3.63117 kcal/mol@LB@Unfolding Energy - sRNA 8.28637 kcal/mol@LB@@LB@Position - mRNA 150 -- 196@LB@Position - sRNA 40 -- 87@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 2 |
2.663e-05 |
0.04123 |
stm2355 |
argT |
-17.69 |
0.042680 |
144 -- 202 |
34 -- 91 |
histidine ABC transporter substrate-binding protein HisJ |
|
_____________143____________________203\n_____________|______________________|\n5'-UUA...AAGUC_________________C____AAAAC...AUA-3'\n______________UGCAAACAC_ACAACGC_ACGU\n______________|||||||||_|||||:|_||:|\n______________ACGUUUGUG_UGUUGUG_UGUA\n3'-UUU...GGUUA_________U_______U____GUGUU...UCA-5'\n_____________|______________________|\n_____________92_____________________33\n |
153 -- 159 |
75 -- 81 |
-25.653 kcal/mol |
2.98604 kcal/mol |
4.21448 kcal/mol |
143 203@LB@ | |@LB@5'-UUA...AAGUC C AAAAC...AUA-3'@LB@ UGCAAACAC ACAACGC ACGU@LB@ ||||||||| |||||:| ||:|@LB@ ACGUUUGUG UGUUGUG UGUA@LB@3'-UUU...GGUUA U U GUGUU...UCA-5'@LB@ | |@LB@ 92 33@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -25.653 kcal/mol@LB@Unfolding Energy - mRNA 2.98604 kcal/mol@LB@Unfolding Energy - sRNA 4.21448 kcal/mol@LB@@LB@Position - mRNA 144 -- 202@LB@Position - sRNA 34 -- 91@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 45 |
0.001635 |
0.1267 |
stm2351 |
hisP |
-13.82 |
0.180688 |
258 -- 282 |
115 -- 140 |
histidine and lysine/arginine/ornithine transport protein |
|
_____________257__________________________283\n_____________|____________________________|\n5'-UAC...GUCAU______CU____________________AGGCC...AUG-3'\n______________GAAGUG__GAAAGGGGUA___UCGCUGC\n______________||||||__:|||:|||||___|||||:|\n______________CUUCAC__UUUUUCCCAU___AGCGAUG\n3'-UUU...AUGUC__________________CAG_______GCACC...UCA-5'\n_____________|____________________________|\n_____________141__________________________114\n |
276 -- 282 |
115 -- 121 |
-29.6028 kcal/mol |
6.54228 kcal/mol |
8.52785 kcal/mol |
257 283@LB@ | |@LB@5'-UAC...GUCAU CU AGGCC...AUG-3'@LB@ GAAGUG GAAAGGGGUA UCGCUGC@LB@ |||||| :|||:||||| |||||:|@LB@ CUUCAC UUUUUCCCAU AGCGAUG@LB@3'-UUU...AUGUC CAG GCACC...UCA-5'@LB@ | |@LB@ 141 114@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -29.6028 kcal/mol@LB@Unfolding Energy - mRNA 6.54228 kcal/mol@LB@Unfolding Energy - sRNA 8.52785 kcal/mol@LB@@LB@Position - mRNA 258 -- 282@LB@Position - sRNA 115 -- 140@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 115 -- 121@LB@ |
| 37 |
0.001263 |
0.1215 |
stm2511 |
guaB |
-22.14 |
0.007548 |
255 -- 298 |
35 -- 73 |
IMP dehydrogenase |
|
_____________254___________________________________________299\n_____________|_____________________________________________|\n5'-GGC...UUCCC_______UCC_____UUU______UACU___G___UC________GU-3'\n______________GC_UCAC___ACCGU___GCCGAA____GCC_AUC__AGCACGCA\n______________:|_||||___|||||___|||:||____|||_|||__|:||||||\n______________UG_AGUG___UGGCA___CGGUUU____CGG_UAG__UUGUGCGU\n3'-UUU...UGUGU__U____U_______UU_______U______G___UC________AAGGC...UCA-5'\n_____________|_____________________________________________|\n_____________74____________________________________________34\n |
292 -- 298 |
35 -- 41 |
-39.0524 kcal/mol |
5.99157 kcal/mol |
19.7557 kcal/mol |
254 299@LB@ | |@LB@5'-GGC...UUCCC UCC UUU UACU G UC GU-3'@LB@ GC UCAC ACCGU GCCGAA GCC AUC AGCACGCA@LB@ :| |||| ||||| |||:|| ||| ||| |:||||||@LB@ UG AGUG UGGCA CGGUUU CGG UAG UUGUGCGU@LB@3'-UUU...UGUGU U U UU U G UC AAGGC...UCA-5'@LB@ | |@LB@ 74 34@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -39.0524 kcal/mol@LB@Unfolding Energy - mRNA 5.99157 kcal/mol@LB@Unfolding Energy - sRNA 19.7557 kcal/mol@LB@@LB@Position - mRNA 255 -- 298@LB@Position - sRNA 35 -- 73@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 115 |
0.005604 |
0.1728 |
stm0982 |
himD |
-16.93 |
0.057154 |
154 -- 192 |
37 -- 75 |
integration host factor subunit beta |
|
______________154________193\n______________|__________|\n___________5'-___________GGCUG...UGG-3'\n______________AACAACGCAAU\n______________||||||:|||:\n______________UUGUUGUGUUG\n3'-UUU...UUGUG___________UAGUG...UCA-5'\n_____________|___________|\n_____________76__________36\n |
5 -- 11 |
72 -- 78 |
-12.1177 kcal/mol |
1.51678 kcal/mol |
3.07616 kcal/mol |
154 193@LB@ | |@LB@ 5'- GGCUG...UGG-3'@LB@ AACAACGCAAU@LB@ ||||||:|||:@LB@ UUGUUGUGUUG@LB@3'-UUU...UUGUG UAGUG...UCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -12.1177 kcal/mol@LB@Unfolding Energy - mRNA 1.51678 kcal/mol@LB@Unfolding Energy - sRNA 3.07616 kcal/mol@LB@@LB@Position - mRNA 154 -- 192@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 30 |
0.0007612 |
0.08814 |
stm3909 |
ilvC |
-21.15 |
0.011132 |
166 -- 188 |
66 -- 89 |
ketol-acid reductoisomerase |
|
_____________165_____________________189\n_____________|_______________________|\n5'-CCA...AACAA_______________________GGAGU...GCU-3'\n______________UAAGCGCGAC_ACACAACAUCAC\n______________:||:|:|:||_||||||||||||\n______________GUUUGUGUUG_UGUGUUGUAGUG\n3'-UUU...UUAAC__________U____________UUGGC...UCA-5'\n_____________|_______________________|\n_____________90______________________65\n |
181 -- 187 |
67 -- 73 |
-29.859 kcal/mol |
2.61707 kcal/mol |
5.66809 kcal/mol |
165 189@LB@ | |@LB@5'-CCA...AACAA GGAGU...GCU-3'@LB@ UAAGCGCGAC ACACAACAUCAC@LB@ :||:|:|:|| ||||||||||||@LB@ GUUUGUGUUG UGUGUUGUAGUG@LB@3'-UUU...UUAAC U UUGGC...UCA-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -21.15 kcal/mol@LB@Hybridization Energy -29.859 kcal/mol@LB@Unfolding Energy - mRNA 2.61707 kcal/mol@LB@Unfolding Energy - sRNA 5.66809 kcal/mol@LB@@LB@Position - mRNA 166 -- 188@LB@Position - sRNA 66 -- 89@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 84 |
0.003893 |
0.1596 |
stm2015 |
erfK |
-27.15 |
0.001054 |
109 -- 172 |
35 -- 90 |
L D-transpeptidase |
|
_____________108____________________________________________________173\n_____________|______________________________________________________|\n5'-GAA...GGAAC____________UAACCCGGGC________________AU_____AA_______AUACU...UGG-3'\n______________GCAAACGCAACA__________GCACAACA_C_CAGCC__GUGAG__AAAAGCU\n______________||||||:|||||__________:|||||||_|_||:||__||:||__||||||:\n______________CGUUUGUGUUGU__________UGUGUUGU_G_GUUGG__CAUUC__UUUUCGG\n3'-UUU...GUUAA______________________________A_U____________GG_______GUAGU...UCA-5'\n_____________|______________________________________________________|\n_____________91_____________________________________________________34\n |
154 -- 160 |
49 -- 55 |
-46.562 kcal/mol |
9.44521 kcal/mol |
15.2217 kcal/mol |
108 173@LB@ | |@LB@5'-GAA...GGAAC UAACCCGGGC AU AA AUACU...UGG-3'@LB@ GCAAACGCAACA GCACAACA C CAGCC GUGAG AAAAGCU@LB@ ||||||:||||| :||||||| | ||:|| ||:|| ||||||:@LB@ CGUUUGUGUUGU UGUGUUGU G GUUGG CAUUC UUUUCGG@LB@3'-UUU...GUUAA A U GG GUAGU...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -27.15 kcal/mol@LB@Hybridization Energy -46.562 kcal/mol@LB@Unfolding Energy - mRNA 9.44521 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 109 -- 172@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 4 |
5.758e-05 |
0.04123 |
stm3564 |
livK |
-17.90 |
0.039430 |
157 -- 215 |
37 -- 90 |
leucine ABC transporter subunit substrate-binding protein LivK |
|
_____________156______________________216\n_____________|________________________|\n5'-UUU...GCAAA_____A__________________AUGGG...CGA-3'\n______________AAACA_AAC_AUAUAACAUCACGA\n______________|||||_|||_|:|:||||||||:|\n______________UUUGU_UUG_UGUGUUGUAGUGUU\n3'-UUU...UAACG_____G___U______________GGCAU...UCA-5'\n_____________|________________________|\n_____________91_______________________36\n |
178 -- 184 |
65 -- 71 |
-21.8749 kcal/mol |
0.694231 kcal/mol |
6.38817 kcal/mol |
156 216@LB@ | |@LB@5'-UUU...GCAAA A AUGGG...CGA-3'@LB@ AAACA AAC AUAUAACAUCACGA@LB@ ||||| ||| |:|:||||||||:|@LB@ UUUGU UUG UGUGUUGUAGUGUU@LB@3'-UUU...UAACG G U GGCAU...UCA-5'@LB@ | |@LB@ 91 36@LB@@LB@@LB@Energy -17.90 kcal/mol@LB@Hybridization Energy -21.8749 kcal/mol@LB@Unfolding Energy - mRNA 0.694231 kcal/mol@LB@Unfolding Energy - sRNA 6.38817 kcal/mol@LB@@LB@Position - mRNA 157 -- 215@LB@Position - sRNA 37 -- 90@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 65 -- 71@LB@ |
