81 |
0.003764 |
0.1596 |
stm0121 |
ftsL |
-18.45 |
0.031843 |
91 -- 225 |
48 -- 186 |
cell division protein FtsL |
|
_____________90__________________226\n_____________|___________________|\n5'-CGU...UGCCG__________A________GAAAA...UGC-3'\n______________GGUGAAAAAG_GGUAG_CU\n______________:|||||||||_|||||_||\n______________UCACUUUUUC_CCAUC_GA\n3'-UUU...GUCCU________________A__GCGAU...UCA-5'\n_____________|___________________|\n_____________187_________________47\n |
133 -- 139 |
129 -- 135 |
-20.6582 kcal/mol |
4.19087 kcal/mol |
6.37024 kcal/mol |
90 226@LB@ | |@LB@5'-CGU...UGCCG A GAAAA...UGC-3'@LB@ GGUGAAAAAG GGUAG CU@LB@ :||||||||| ||||| ||@LB@ UCACUUUUUC CCAUC GA@LB@3'-UUU...GUCCU A GCGAU...UCA-5'@LB@ | |@LB@ 187 47@LB@@LB@@LB@Energy -18.45 kcal/mol@LB@Hybridization Energy -20.6582 kcal/mol@LB@Unfolding Energy - mRNA 4.19087 kcal/mol@LB@Unfolding Energy - sRNA 6.37024 kcal/mol@LB@@LB@Position - mRNA 91 -- 225@LB@Position - sRNA 48 -- 186@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 129 -- 135@LB@ |
82 |
0.003783 |
0.1596 |
stm0710 |
ybgH |
-19.90 |
0.018103 |
103 -- 151 |
33 -- 90 |
MFS transporter |
|
_____________102__________________152\n_____________|____________________|\n5'-GCG...UUUAA_G__________________GGCUU...UUC-3'\n______________G_AAACACGGCGAUACGGCA\n______________|_||||||::|:|:||::||\n______________C_UUUGUGUUGUUGUGUUGU\n3'-UUU...GUUAA_G__________________AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________32\n |
116 -- 122 |
71 -- 77 |
-24.8461 kcal/mol |
5.94354 kcal/mol |
3.80671 kcal/mol |
102 152@LB@ | |@LB@5'-GCG...UUUAA G GGCUU...UUC-3'@LB@ G AAACACGGCGAUACGGCA@LB@ | ||||||::|:|:||::||@LB@ C UUUGUGUUGUUGUGUUGU@LB@3'-UUU...GUUAA G AGUGU...UCA-5'@LB@ | |@LB@ 91 32@LB@@LB@@LB@Energy -19.90 kcal/mol@LB@Hybridization Energy -24.8461 kcal/mol@LB@Unfolding Energy - mRNA 5.94354 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 103 -- 151@LB@Position - sRNA 33 -- 90@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 71 -- 77@LB@ |
83 |
0.003855 |
0.1596 |
stm1680 |
ycjI |
-14.22 |
0.156552 |
151 -- 200 |
34 -- 86 |
murein peptide amidase A |
|
_____________150_________201\n_____________|___________|\n5'-GAA...CUGAA___________UUCGC...CGG-3'\n______________CAUUAUGGACG\n______________||:|||||||:\n______________GUGAUACCUGU\n3'-UUU...AAUUA___________CUGUC...UCA-5'\n_____________|___________|\n_____________87__________33\n |
259 -- 265 |
159 -- 165 |
-14.9153 kcal/mol |
1.6295 kcal/mol |
3.40995 kcal/mol |
150 201@LB@ | |@LB@5'-GAA...CUGAA UUCGC...CGG-3'@LB@ CAUUAUGGACG@LB@ ||:|||||||:@LB@ GUGAUACCUGU@LB@3'-UUU...AAUUA CUGUC...UCA-5'@LB@ | |@LB@ 87 33@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -14.9153 kcal/mol@LB@Unfolding Energy - mRNA 1.6295 kcal/mol@LB@Unfolding Energy - sRNA 3.40995 kcal/mol@LB@@LB@Position - mRNA 151 -- 200@LB@Position - sRNA 34 -- 86@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 159 -- 165@LB@ |
84 |
0.003893 |
0.1596 |
stm2015 |
erfK |
-27.15 |
0.001054 |
109 -- 172 |
35 -- 90 |
L D-transpeptidase |
|
_____________108____________________________________________________173\n_____________|______________________________________________________|\n5'-GAA...GGAAC____________UAACCCGGGC________________AU_____AA_______AUACU...UGG-3'\n______________GCAAACGCAACA__________GCACAACA_C_CAGCC__GUGAG__AAAAGCU\n______________||||||:|||||__________:|||||||_|_||:||__||:||__||||||:\n______________CGUUUGUGUUGU__________UGUGUUGU_G_GUUGG__CAUUC__UUUUCGG\n3'-UUU...GUUAA______________________________A_U____________GG_______GUAGU...UCA-5'\n_____________|______________________________________________________|\n_____________91_____________________________________________________34\n |
154 -- 160 |
49 -- 55 |
-46.562 kcal/mol |
9.44521 kcal/mol |
15.2217 kcal/mol |
108 173@LB@ | |@LB@5'-GAA...GGAAC UAACCCGGGC AU AA AUACU...UGG-3'@LB@ GCAAACGCAACA GCACAACA C CAGCC GUGAG AAAAGCU@LB@ ||||||:||||| :||||||| | ||:|| ||:|| ||||||:@LB@ CGUUUGUGUUGU UGUGUUGU G GUUGG CAUUC UUUUCGG@LB@3'-UUU...GUUAA A U GG GUAGU...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -27.15 kcal/mol@LB@Hybridization Energy -46.562 kcal/mol@LB@Unfolding Energy - mRNA 9.44521 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 109 -- 172@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 49 -- 55@LB@ |
85 |
0.003998 |
0.1596 |
stm1098 |
hpaC |
-22.15 |
0.007534 |
132 -- 187 |
37 -- 90 |
4-hydroxyphenylacetate 3-monooxygenase reductase component |
|
_____________131________________________________________188\n_____________|__________________________________________|\n5'-UAC...GUUUC___UUU__________G_________AU______GA______GCUGA...GCG-3'\n______________GCA___GCACAAUAAC_ACGACAUCA__CAACUG__UAAGCU\n______________|||___:|||||:|||_||:||||||__||||:|__|||||:\n______________CGU___UGUGUUGUUG_UGUUGUAGU__GUUGGC__AUUCGG\n3'-UUU...GUUAA___U______________________________________UUUUC...UCA-5'\n_____________|__________________________________________|\n_____________91_________________________________________36\n |
151 -- 157 |
68 -- 74 |
-38.4357 kcal/mol |
7.30976 kcal/mol |
11.8287 kcal/mol |
131 188@LB@ | |@LB@5'-UAC...GUUUC UUU G AU GA GCUGA...GCG-3'@LB@ GCA GCACAAUAAC ACGACAUCA CAACUG UAAGCU@LB@ ||| :|||||:||| ||:|||||| ||||:| |||||:@LB@ CGU UGUGUUGUUG UGUUGUAGU GUUGGC AUUCGG@LB@3'-UUU...GUUAA U UUUUC...UCA-5'@LB@ | |@LB@ 91 36@LB@@LB@@LB@Energy -22.15 kcal/mol@LB@Hybridization Energy -38.4357 kcal/mol@LB@Unfolding Energy - mRNA 7.30976 kcal/mol@LB@Unfolding Energy - sRNA 11.8287 kcal/mol@LB@@LB@Position - mRNA 132 -- 187@LB@Position - sRNA 37 -- 90@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 68 -- 74@LB@ |
86 |
0.004005 |
0.1596 |
stm1961 |
fliS |
-19.11 |
0.024619 |
1 -- 77 |
23 -- 90 |
flagellar export chaperone FliS |
|
______________1__________________________________________________________________________________78\n______________|__________________________________________________________________________________|\n___________5'-_______G_______UU____C________AA_____UGACAAAACAGUACCU_________C____________________CGUUG...AUG-3'\n______________GC__GCA_GACAACG__AACG_CAC_GCUG__AAGCC________________GUCCGUUAG_AACA_GCAU__CGAUGAAAC\n______________||__:||_:|||||:__|||:_|||_:|:|__|||||________________|:||:|:||_||||_||||__||||:||||\n______________CG__UGU_UUGUUGU__UUGU_GUG_UGGC__UUCGG________________CGGGUAGUC_UUGU_CGUA__GCUAUUUUG\n3'-UUU...GUUAA__UU___G_______G_____A___U____A______UUUU__________________________G____AG_________AAAAG...UCA-5'\n_____________|___________________________________________________________________________________|\n_____________91__________________________________________________________________________________22\n |
7 -- 13 |
76 -- 82 |
-54.7378 kcal/mol |
16.9215 kcal/mol |
25.0607 kcal/mol |
1 78@LB@ | |@LB@ 5'- G UU C AA UGACAAAACAGUACCU C CGUUG...AUG-3'@LB@ GC GCA GACAACG AACG CAC GCUG AAGCC GUCCGUUAG AACA GCAU CGAUGAAAC@LB@ || :|| :|||||: |||: ||| :|:| ||||| |:||:|:|| |||| |||| ||||:||||@LB@ CG UGU UUGUUGU UUGU GUG UGGC UUCGG CGGGUAGUC UUGU CGUA GCUAUUUUG@LB@3'-UUU...GUUAA UU G G A U A UUUU G AG AAAAG...UCA-5'@LB@ | |@LB@ 91 22@LB@@LB@@LB@Energy -19.11 kcal/mol@LB@Hybridization Energy -54.7378 kcal/mol@LB@Unfolding Energy - mRNA 16.9215 kcal/mol@LB@Unfolding Energy - sRNA 25.0607 kcal/mol@LB@@LB@Position - mRNA 1 -- 77@LB@Position - sRNA 23 -- 90@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 76 -- 82@LB@ |
87 |
0.004009 |
0.1596 |
stm2067 |
sbcB |
-11.70 |
0.367652 |
220 -- 292 |
35 -- 90 |
exodeoxyribonuclease I |
|
_____________219_____________________293\n_____________|_______________________|\n5'-AUU...AUGUA______U________________AUUGG...CCG-3'\n______________CGAACA_UAGCA__ACAAUAUCA\n______________|:||||_:|:||__||||:||||\n______________GUUUGU_GUUGU__UGUUGUAGU\n3'-UUU...UUAAC____________UG_________GUUGG...UCA-5'\n_____________|_______________________|\n_____________91______________________34\n |
110 -- 116 |
68 -- 74 |
-17.8808 kcal/mol |
2.08887 kcal/mol |
5.27986 kcal/mol |
219 293@LB@ | |@LB@5'-AUU...AUGUA U AUUGG...CCG-3'@LB@ CGAACA UAGCA ACAAUAUCA@LB@ |:|||| :|:|| ||||:||||@LB@ GUUUGU GUUGU UGUUGUAGU@LB@3'-UUU...UUAAC UG GUUGG...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -17.8808 kcal/mol@LB@Unfolding Energy - mRNA 2.08887 kcal/mol@LB@Unfolding Energy - sRNA 5.27986 kcal/mol@LB@@LB@Position - mRNA 220 -- 292@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 68 -- 74@LB@ |
88 |
0.00402 |
0.1596 |
stm2651 |
yfiQ |
-16.02 |
0.080775 |
116 -- 159 |
50 -- 88 |
protein acetyltransferase |
|
_____________115__________________________160\n_____________|____________________________|\n5'-CAA...AGGAA__________UCCGGGA___________AUAAA...GUA-3'\n______________AAACGCAACA_______AACGUCACAGC\n______________||||:|||||_______|||:|||||:|\n______________UUUGUGUUGU_______UUGUAGUGUUG\n3'-UUU...UAACG__________UGUG______________GCAUU...UCA-5'\n_____________|____________________________|\n_____________89___________________________49\n |
137 -- 143 |
64 -- 70 |
-25.6269 kcal/mol |
4.45838 kcal/mol |
7.90699 kcal/mol |
115 160@LB@ | |@LB@5'-CAA...AGGAA UCCGGGA AUAAA...GUA-3'@LB@ AAACGCAACA AACGUCACAGC@LB@ ||||:||||| |||:|||||:|@LB@ UUUGUGUUGU UUGUAGUGUUG@LB@3'-UUU...UAACG UGUG GCAUU...UCA-5'@LB@ | |@LB@ 89 49@LB@@LB@@LB@Energy -16.02 kcal/mol@LB@Hybridization Energy -25.6269 kcal/mol@LB@Unfolding Energy - mRNA 4.45838 kcal/mol@LB@Unfolding Energy - sRNA 7.90699 kcal/mol@LB@@LB@Position - mRNA 116 -- 159@LB@Position - sRNA 50 -- 88@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 64 -- 70@LB@ |
89 |
0.004143 |
0.1596 |
stm2957 |
ygcA |
-15.40 |
0.101796 |
159 -- 208 |
35 -- 82 |
23S rRNA (uracil(1939)-C(5))-methyltransferase |
|
_____________158____________________________________________209\n_____________|______________________________________________|\n5'-AUA...UACUC_____AACG____GU_________UCAG___________UA_____AAUGA...GUC-3'\n______________UGCAA____GCGC__GACGACGCG____AUCAUAACCGU__AAGUC\n______________|||||____:|:|__:||:||:|:____||||:||||||__|||:|\n______________ACGUU____UGUG__UUGUUGUGU____UAGUGUUGGCA__UUCGG\n3'-UUU...GGUUA________________________UG____________________UUUUC...UCA-5'\n_____________|______________________________________________|\n_____________83_____________________________________________34\n |
250 -- 256 |
61 -- 67 |
-36.475 kcal/mol |
14.3441 kcal/mol |
11.8308 kcal/mol |
158 209@LB@ | |@LB@5'-AUA...UACUC AACG GU UCAG UA AAUGA...GUC-3'@LB@ UGCAA GCGC GACGACGCG AUCAUAACCGU AAGUC@LB@ ||||| :|:| :||:||:|: ||||:|||||| |||:|@LB@ ACGUU UGUG UUGUUGUGU UAGUGUUGGCA UUCGG@LB@3'-UUU...GGUUA UG UUUUC...UCA-5'@LB@ | |@LB@ 83 34@LB@@LB@@LB@Energy -15.40 kcal/mol@LB@Hybridization Energy -36.475 kcal/mol@LB@Unfolding Energy - mRNA 14.3441 kcal/mol@LB@Unfolding Energy - sRNA 11.8308 kcal/mol@LB@@LB@Position - mRNA 159 -- 208@LB@Position - sRNA 35 -- 82@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 61 -- 67@LB@ |
90 |
0.004161 |
0.1596 |
stm1124 |
putA |
-17.89 |
0.039481 |
159 -- 201 |
125 -- 168 |
trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase |
|
_____________158______________________________________________202\n_____________|________________________________________________|\n5'-UAA...CGCUA____U___UUA________A_C____A_____________________UGGGA...UAA-3'\n______________ACUA_UGG___GCAGAUAG_G_GAAU__ACAGG_AGU___AGAGGGUA\n______________||||_|||___:||||:||_|_:|||__|||||_|||___|:||||||\n______________UGAU_ACC___UGUCUGUC_C_UUUA__UGUCC_UCA___UUUCCCAU\n3'-UUU...AUUAG___________________C_A____CA_____U___CUU________CAGAG...UCA-5'\n_____________|________________________________________________|\n_____________169______________________________________________124\n |
195 -- 201 |
125 -- 131 |
-33.9858 kcal/mol |
7.26317 kcal/mol |
8.4265 kcal/mol |
158 202@LB@ | |@LB@5'-UAA...CGCUA U UUA A C A UGGGA...UAA-3'@LB@ ACUA UGG GCAGAUAG G GAAU ACAGG AGU AGAGGGUA@LB@ |||| ||| :||||:|| | :||| ||||| ||| |:||||||@LB@ UGAU ACC UGUCUGUC C UUUA UGUCC UCA UUUCCCAU@LB@3'-UUU...AUUAG C A CA U CUU CAGAG...UCA-5'@LB@ | |@LB@ 169 124@LB@@LB@@LB@Energy -17.89 kcal/mol@LB@Hybridization Energy -33.9858 kcal/mol@LB@Unfolding Energy - mRNA 7.26317 kcal/mol@LB@Unfolding Energy - sRNA 8.4265 kcal/mol@LB@@LB@Position - mRNA 159 -- 201@LB@Position - sRNA 125 -- 168@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 125 -- 131@LB@ |