| 141 |
0.007251 |
0.182 |
stm2325 |
nuoE |
-19.46 |
0.021521 |
159 -- 233 |
56 -- 129 |
NADH-quinone oxidoreductase subunit E |
|
_____________158_____________________________________________________________________________234\n_____________|_______________________________________________________________________________|\n5'-AUG...UAUCU_______A___AUU____UAU___A_____________CUAAUUAU______G_________AC___A___________UUUGA...GUG-3'\n______________GGGUAGU_UCG___UUGU___GUC_GA__UGUGGACCG________GCACGA_AAU_CAACA__CAC_AACCG_AGGCU\n______________|||||||_|||___::||___|||_||__:|::||||:________:|||:|_||:_|||||__|||_|||||_|:||:\n______________CCCAUCA_AGC___GGCA___CAG_CU__GCGUCUGGU________UGUGUU_UUG_GUUGU__GUG_UUGGC_UUCGG\n3'-UUU...UUUUU_______G___GAU____C_____A__UA_________UAACGUU_______G___U_____A__________A_____UUUUC...UCA-5'\n_____________|_______________________________________________________________________________|\n_____________130_____________________________________________________________________________55\n |
159 -- 165 |
123 -- 129 |
-58.9967 kcal/mol |
15.8863 kcal/mol |
27.1281 kcal/mol |
158 234@LB@ | |@LB@5'-AUG...UAUCU A AUU UAU A CUAAUUAU G AC A UUUGA...GUG-3'@LB@ GGGUAGU UCG UUGU GUC GA UGUGGACCG GCACGA AAU CAACA CAC AACCG AGGCU@LB@ ||||||| ||| ::|| ||| || :|::||||: :|||:| ||: ||||| ||| ||||| |:||:@LB@ CCCAUCA AGC GGCA CAG CU GCGUCUGGU UGUGUU UUG GUUGU GUG UUGGC UUCGG@LB@3'-UUU...UUUUU G GAU C A UA UAACGUU G U A A UUUUC...UCA-5'@LB@ | |@LB@ 130 55@LB@@LB@@LB@Energy -19.46 kcal/mol@LB@Hybridization Energy -58.9967 kcal/mol@LB@Unfolding Energy - mRNA 15.8863 kcal/mol@LB@Unfolding Energy - sRNA 27.1281 kcal/mol@LB@@LB@Position - mRNA 159 -- 233@LB@Position - sRNA 56 -- 129@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 123 -- 129@LB@ |
| 142 |
0.007269 |
0.182 |
stm4341 |
frdC |
-12.15 |
0.319206 |
131 -- 234 |
54 -- 160 |
fumarate reductase subunit C |
|
_____________130__________________235\n_____________|____________________|\n5'-AGA...AGGAG_______________UA___GCAAA...CGG-3'\n______________UGC_AACAUGACGAC__AAC\n______________|||_||||::||:||__|||\n______________ACG_UUGUGUUGUUG__UUG\n3'-UUU...GGUUA___U___________UG___UAGUG...UCA-5'\n_____________|____________________|\n_____________161__________________53\n |
202 -- 208 |
77 -- 83 |
-18.8897 kcal/mol |
4.02107 kcal/mol |
3.80548 kcal/mol |
130 235@LB@ | |@LB@5'-AGA...AGGAG UA GCAAA...CGG-3'@LB@ UGC AACAUGACGAC AAC@LB@ ||| ||||::||:|| |||@LB@ ACG UUGUGUUGUUG UUG@LB@3'-UUU...GGUUA U UG UAGUG...UCA-5'@LB@ | |@LB@ 161 53@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -18.8897 kcal/mol@LB@Unfolding Energy - mRNA 4.02107 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 131 -- 234@LB@Position - sRNA 54 -- 160@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 143 |
0.007336 |
0.182 |
stm2276 |
ubiG |
-14.65 |
0.134291 |
225 -- 278 |
36 -- 81 |
2-octaprenyl-6-hydroxy phenol methylase |
|
_____________224_________________279\n_____________|___________________|\n5'-CAC...CGGCA____________CA_____UUUGC...AAU-3'\n______________GUAGAUAUAACG__GCGAC\n______________|:|:|:|:|||:__:|:||\n______________CGUUUGUGUUGU__UGUUG\n3'-UUU...GUUAA____________UG_____UAGUG...UCA-5'\n_____________|___________________|\n_____________82__________________35\n |
134 -- 140 |
80 -- 86 |
-18.0681 kcal/mol |
5.41873 kcal/mol |
3.80362 kcal/mol |
224 279@LB@ | |@LB@5'-CAC...CGGCA CA UUUGC...AAU-3'@LB@ GUAGAUAUAACG GCGAC@LB@ |:|:|:|:|||: :|:||@LB@ CGUUUGUGUUGU UGUUG@LB@3'-UUU...GUUAA UG UAGUG...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -18.0681 kcal/mol@LB@Unfolding Energy - mRNA 5.41873 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 225 -- 278@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 144 |
0.00736 |
0.182 |
stm4559 |
yjjG |
-11.80 |
0.356804 |
189 -- 218 |
128 -- 159 |
putative haloacid dehalogenase-like hydrolase |
|
_____________188_________________________________219\n_____________|___________________________________|\n5'-UUG...AUAAA_G_____A____U__________________CU__AUUUU...UCA-3'\n______________A_AGGCA_GGUG_AAUG_AU__GAAGUGGGA__GG\n______________|_||:||_|||:_||||_|:__||||||::|__||\n______________U_UCUGU_CCAU_UUAC_UG__CUUCACUUU__CC\n3'-UUU...AUACC_G_____C_________A__UC_________UU__CAUCA...UCA-5'\n_____________|___________________________________|\n_____________160_________________________________127\n |
208 -- 214 |
132 -- 138 |
-24.694 kcal/mol |
5.33554 kcal/mol |
7.83417 kcal/mol |
188 219@LB@ | |@LB@5'-UUG...AUAAA G A U CU AUUUU...UCA-3'@LB@ A AGGCA GGUG AAUG AU GAAGUGGGA GG@LB@ | ||:|| |||: |||| |: ||||||::| ||@LB@ U UCUGU CCAU UUAC UG CUUCACUUU CC@LB@3'-UUU...AUACC G C A UC UU CAUCA...UCA-5'@LB@ | |@LB@ 160 127@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -24.694 kcal/mol@LB@Unfolding Energy - mRNA 5.33554 kcal/mol@LB@Unfolding Energy - sRNA 7.83417 kcal/mol@LB@@LB@Position - mRNA 189 -- 218@LB@Position - sRNA 128 -- 159@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 132 -- 138@LB@ |
| 145 |
0.007435 |
0.1826 |
stm1822 |
yoaB |
-15.17 |
0.110813 |
243 -- 269 |
162 -- 185 |
similar to E. coli orf hypothetical protein (AAC74879.1); Blastp hit to AAC74879.1 (130 aa) 92% identity in aa 17 - 130 |
|
_____________242______________________270\n_____________|________________________|\n5'-GUG...AUUUG___AG_____UAU_U_________AAGGC...CCG-3'\n______________CAC___GGAU___G_CAGGGUAGA\n______________|||___|||:___|_|||||||:|\n______________GUG___CCUG___C_GUCCCAUUU\n3'-UUU...AAUUA___AUA____U___U_________ACAUG...UCA-5'\n_____________|________________________|\n_____________186______________________161\n |
106 -- 112 |
148 -- 154 |
-19.875 kcal/mol |
5.9246 kcal/mol |
4.20228 kcal/mol |
242 270@LB@ | |@LB@5'-GUG...AUUUG AG UAU U AAGGC...CCG-3'@LB@ CAC GGAU G CAGGGUAGA@LB@ ||| |||: | |||||||:|@LB@ GUG CCUG C GUCCCAUUU@LB@3'-UUU...AAUUA AUA U U ACAUG...UCA-5'@LB@ | |@LB@ 186 161@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -19.875 kcal/mol@LB@Unfolding Energy - mRNA 5.9246 kcal/mol@LB@Unfolding Energy - sRNA 4.20228 kcal/mol@LB@@LB@Position - mRNA 243 -- 269@LB@Position - sRNA 162 -- 185@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 148 -- 154@LB@ |
| 146 |
0.007509 |
0.1831 |
stm1510 |
ydfH |
-14.80 |
0.126744 |
211 -- 261 |
32 -- 88 |
GntR family transcriptional regulator |
|
_____________210_____________________________________________________262\n_____________|_______________________________________________________|\n5'-UGA...AAAAA__AA____GAAU_____UCG___________UUAACCCU_______CUGU_____AGCAA...GCA-3'\n______________GU__GAAU____GACCG_____AAACGCAGC________ACACAGC____CAACC\n______________||__||||____||||:_____||||:||:|________|||||:|____|||||\n______________CA__CUUA____CUGGU_____UUUGUGUUG________UGUGUUG____GUUGG\n3'-UUU...GGCAC__GA____GCGU_____UAACG_________U______________UAGU_____CAUUC...UCA-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________31\n |
228 -- 234 |
72 -- 78 |
-34.0267 kcal/mol |
5.39256 kcal/mol |
17.9909 kcal/mol |
210 262@LB@ | |@LB@5'-UGA...AAAAA AA GAAU UCG UUAACCCU CUGU AGCAA...GCA-3'@LB@ GU GAAU GACCG AAACGCAGC ACACAGC CAACC@LB@ || |||| ||||: ||||:||:| |||||:| |||||@LB@ CA CUUA CUGGU UUUGUGUUG UGUGUUG GUUGG@LB@3'-UUU...GGCAC GA GCGU UAACG U UAGU CAUUC...UCA-5'@LB@ | |@LB@ 89 31@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -34.0267 kcal/mol@LB@Unfolding Energy - mRNA 5.39256 kcal/mol@LB@Unfolding Energy - sRNA 17.9909 kcal/mol@LB@@LB@Position - mRNA 211 -- 261@LB@Position - sRNA 32 -- 88@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 147 |
0.007823 |
0.1845 |
stm3477 |
cysG |
-15.08 |
0.114738 |
192 -- 245 |
61 -- 111 |
uroporphyrinogen-III C-methyltransferase |
|
_____________191____________________________________________246\n_____________|______________________________________________|\n5'-UCC...UAAGG___AAU____________U____CU___UUUUGU____U_______CGCGA...AAG-3'\n______________GGU____GUCGUGGACCA_UUGC__AUA______CAAU_ACGCGAC\n______________|||____:|||::|||||_||||__|:|______|||:_||:|:||\n______________CCA____UAGCGUCUGGU_AACG__UGU______GUUG_UGUGUUG\n3'-UUU...UGGCA___GACU___________U____UU_____________U_______UAGUG...UCA-5'\n_____________|______________________________________________|\n_____________112____________________________________________60\n |
230 -- 236 |
72 -- 78 |
-36.0085 kcal/mol |
10.6439 kcal/mol |
13.6111 kcal/mol |
191 246@LB@ | |@LB@5'-UCC...UAAGG AAU U CU UUUUGU U CGCGA...AAG-3'@LB@ GGU GUCGUGGACCA UUGC AUA CAAU ACGCGAC@LB@ ||| :|||::||||| |||| |:| |||: ||:|:||@LB@ CCA UAGCGUCUGGU AACG UGU GUUG UGUGUUG@LB@3'-UUU...UGGCA GACU U UU U UAGUG...UCA-5'@LB@ | |@LB@ 112 60@LB@@LB@@LB@Energy -15.08 kcal/mol@LB@Hybridization Energy -36.0085 kcal/mol@LB@Unfolding Energy - mRNA 10.6439 kcal/mol@LB@Unfolding Energy - sRNA 13.6111 kcal/mol@LB@@LB@Position - mRNA 192 -- 245@LB@Position - sRNA 61 -- 111@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 148 |
0.007836 |
0.1845 |
stm2318 |
nuoL |
-12.84 |
0.254324 |
144 -- 178 |
37 -- 76 |
NADH-quinone oxidoreductase subunit L |
|
_____________143___________________179\n_____________|_____________________|\n5'-GGG...AGACC_____U____U__________UUCUC...UUG-3'\n______________GAUGG_CAGG___GAUGUACA\n______________||::|_||||___:|||||||\n______________CUGUC_GUCC___UUACAUGU\n3'-UUU...GAUAC_____U____CAU________CCUUC...UCA-5'\n_____________|_____________________|\n_____________77____________________36\n |
82 -- 88 |
142 -- 148 |
-19.9967 kcal/mol |
7.20144 kcal/mol |
3.50251 kcal/mol |
143 179@LB@ | |@LB@5'-GGG...AGACC U U UUCUC...UUG-3'@LB@ GAUGG CAGG GAUGUACA@LB@ ||::| |||| :|||||||@LB@ CUGUC GUCC UUACAUGU@LB@3'-UUU...GAUAC U CAU CCUUC...UCA-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -19.9967 kcal/mol@LB@Unfolding Energy - mRNA 7.20144 kcal/mol@LB@Unfolding Energy - sRNA 3.50251 kcal/mol@LB@@LB@Position - mRNA 144 -- 178@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 142 -- 148@LB@ |
| 149 |
0.007892 |
0.1845 |
stm2071 |
hisG |
-15.61 |
0.094042 |
166 -- 245 |
36 -- 100 |
ATP phosphoribosyltransferase |
|
_____________165________________________246\n_____________|__________________________|\n5'-UUU...AGACC__UU________A________G____ACGCA...AUU-3'\n______________GG__CAGACAGG_UAA____A_AGGA\n______________||__||||||||_|||____|_||||\n______________CC__GUCUGUCC_AUU____U_UCCU\n3'-UUU...UGAUA__U_________C___UACA_G____UCACU...UCA-5'\n_____________|__________________________|\n_____________101________________________35\n |
177 -- 183 |
153 -- 159 |
-19.7047 kcal/mol |
3.01127 kcal/mol |
3.70983 kcal/mol |
165 246@LB@ | |@LB@5'-UUU...AGACC UU A G ACGCA...AUU-3'@LB@ GG CAGACAGG UAA A AGGA@LB@ || |||||||| ||| | ||||@LB@ CC GUCUGUCC AUU U UCCU@LB@3'-UUU...UGAUA U C UACA G UCACU...UCA-5'@LB@ | |@LB@ 101 35@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -19.7047 kcal/mol@LB@Unfolding Energy - mRNA 3.01127 kcal/mol@LB@Unfolding Energy - sRNA 3.70983 kcal/mol@LB@@LB@Position - mRNA 166 -- 245@LB@Position - sRNA 36 -- 100@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 150 |
0.007945 |
0.1845 |
stm2555 |
glyA |
-15.42 |
0.100951 |
252 -- 282 |
137 -- 168 |
serine hydroxymethyltransferase |
|
_____________251_________________________________283\n_____________|___________________________________|\n5'-CAC...GGCAG________________AA________GUC______AGCAC...UCG-3'\n______________GCUAUGGA___GCAGG__AAA_GUAC___AGGAAG\n______________:|||||||___:||||__|||_||||___||||||\n______________UGAUACCU___UGUCC__UUU_CAUG___UCCUUC\n3'-UUU...AUUAG________GUC_____CA___A_____________ACUUU...UCA-5'\n_____________|___________________________________|\n_____________169_________________________________136\n |
253 -- 259 |
161 -- 167 |
-28.2568 kcal/mol |
5.17684 kcal/mol |
6.91101 kcal/mol |
251 283@LB@ | |@LB@5'-CAC...GGCAG AA GUC AGCAC...UCG-3'@LB@ GCUAUGGA GCAGG AAA GUAC AGGAAG@LB@ :||||||| :|||| ||| |||| ||||||@LB@ UGAUACCU UGUCC UUU CAUG UCCUUC@LB@3'-UUU...AUUAG GUC CA A ACUUU...UCA-5'@LB@ | |@LB@ 169 136@LB@@LB@@LB@Energy -15.42 kcal/mol@LB@Hybridization Energy -28.2568 kcal/mol@LB@Unfolding Energy - mRNA 5.17684 kcal/mol@LB@Unfolding Energy - sRNA 6.91101 kcal/mol@LB@@LB@Position - mRNA 252 -- 282@LB@Position - sRNA 137 -- 168@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 161 -- 167@LB@ |
