| 145 |
0.007435 |
0.1826 |
stm1822 |
yoaB |
-15.17 |
0.110813 |
243 -- 269 |
162 -- 185 |
similar to E. coli orf hypothetical protein (AAC74879.1); Blastp hit to AAC74879.1 (130 aa) 92% identity in aa 17 - 130 |
|
_____________242______________________270\n_____________|________________________|\n5'-GUG...AUUUG___AG_____UAU_U_________AAGGC...CCG-3'\n______________CAC___GGAU___G_CAGGGUAGA\n______________|||___|||:___|_|||||||:|\n______________GUG___CCUG___C_GUCCCAUUU\n3'-UUU...AAUUA___AUA____U___U_________ACAUG...UCA-5'\n_____________|________________________|\n_____________186______________________161\n |
106 -- 112 |
148 -- 154 |
-19.875 kcal/mol |
5.9246 kcal/mol |
4.20228 kcal/mol |
242 270@LB@ | |@LB@5'-GUG...AUUUG AG UAU U AAGGC...CCG-3'@LB@ CAC GGAU G CAGGGUAGA@LB@ ||| |||: | |||||||:|@LB@ GUG CCUG C GUCCCAUUU@LB@3'-UUU...AAUUA AUA U U ACAUG...UCA-5'@LB@ | |@LB@ 186 161@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -19.875 kcal/mol@LB@Unfolding Energy - mRNA 5.9246 kcal/mol@LB@Unfolding Energy - sRNA 4.20228 kcal/mol@LB@@LB@Position - mRNA 243 -- 269@LB@Position - sRNA 162 -- 185@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 148 -- 154@LB@ |
| 162 |
0.00849 |
0.1864 |
stm4221 |
pgi |
-15.16 |
0.111294 |
249 -- 289 |
56 -- 88 |
glucose-6-phosphate isomerase |
|
_____________248_______________________________________290\n_____________|_________________________________________|\n5'-GCU...UCCAG______U_____GAAAUGAAA_____________C______UUUCG...ACG-3'\n______________AAACAC_ACGAU_________GACGUUACGAUCG_UGAGCU\n______________||||||_||:|:_________:||:|:||:|:||_|:|||:\n______________UUUGUG_UGUUG_________UUGUAGUGUUGGC_AUUCGG\n3'-UUU...UAACG______U_____UG___________________________UUUUC...UCA-5'\n_____________|_________________________________________|\n_____________89________________________________________55\n |
272 -- 278 |
66 -- 72 |
-30.3131 kcal/mol |
6.22888 kcal/mol |
11.698 kcal/mol |
248 290@LB@ | |@LB@5'-GCU...UCCAG U GAAAUGAAA C UUUCG...ACG-3'@LB@ AAACAC ACGAU GACGUUACGAUCG UGAGCU@LB@ |||||| ||:|: :||:|:||:|:|| |:|||:@LB@ UUUGUG UGUUG UUGUAGUGUUGGC AUUCGG@LB@3'-UUU...UAACG U UG UUUUC...UCA-5'@LB@ | |@LB@ 89 55@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -30.3131 kcal/mol@LB@Unfolding Energy - mRNA 6.22888 kcal/mol@LB@Unfolding Energy - sRNA 11.698 kcal/mol@LB@@LB@Position - mRNA 249 -- 289@LB@Position - sRNA 56 -- 88@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 68 |
0.003225 |
0.1596 |
stm3930 |
yifK |
-15.10 |
0.113746 |
177 -- 247 |
44 -- 93 |
amino acid permease |
|
_____________176____________________248\n_____________|______________________|\n5'-CUU...GAACC_______________UG_G___UUAUG...GCG-3'\n______________GUUGCAAACACGACA__A_GAU\n______________:||||||||||:|||__|_:|:\n______________UAACGUUUGUGUUGU__U_UUG\n3'-UUU...CUGGU_______________UG_G___UAGUG...UCA-5'\n_____________|______________________|\n_____________94_____________________43\n |
185 -- 191 |
79 -- 85 |
-22.6062 kcal/mol |
5.26496 kcal/mol |
3.80917 kcal/mol |
176 248@LB@ | |@LB@5'-CUU...GAACC UG G UUAUG...GCG-3'@LB@ GUUGCAAACACGACA A GAU@LB@ :||||||||||:||| | :|:@LB@ UAACGUUUGUGUUGU U UUG@LB@3'-UUU...CUGGU UG G UAGUG...UCA-5'@LB@ | |@LB@ 94 43@LB@@LB@@LB@Energy -15.10 kcal/mol@LB@Hybridization Energy -22.6062 kcal/mol@LB@Unfolding Energy - mRNA 5.26496 kcal/mol@LB@Unfolding Energy - sRNA 3.80917 kcal/mol@LB@@LB@Position - mRNA 177 -- 247@LB@Position - sRNA 44 -- 93@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 160 |
0.008331 |
0.1845 |
stm0002 |
thrA |
-15.10 |
0.113872 |
18 -- 81 |
44 -- 90 |
bifunctional aspartate kinase/homoserine dehydrogenase I |
|
_____________17______________________82\n_____________|_______________________|\n5'-CCA...UACAA________AAUAA__________AGUAC...UAG-3'\n______________GACAGACA_____AAAUG_ACAG\n______________||||||||_____|||||_||||\n______________CUGUCUGU_____UUUAC_UGUC\n3'-UUU...GAUAC________CCCA______A____CUUCA...UCA-5'\n_____________|_______________________|\n_____________91______________________43\n |
19 -- 25 |
155 -- 161 |
-19.4516 kcal/mol |
0.236149 kcal/mol |
3.68511 kcal/mol |
17 82@LB@ | |@LB@5'-CCA...UACAA AAUAA AGUAC...UAG-3'@LB@ GACAGACA AAAUG ACAG@LB@ |||||||| ||||| ||||@LB@ CUGUCUGU UUUAC UGUC@LB@3'-UUU...GAUAC CCCA A CUUCA...UCA-5'@LB@ | |@LB@ 91 43@LB@@LB@@LB@Energy -15.10 kcal/mol@LB@Hybridization Energy -19.4516 kcal/mol@LB@Unfolding Energy - mRNA 0.236149 kcal/mol@LB@Unfolding Energy - sRNA 3.68511 kcal/mol@LB@@LB@Position - mRNA 18 -- 81@LB@Position - sRNA 44 -- 90@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 155 -- 161@LB@ |
| 41 |
0.001426 |
0.1215 |
stm3718 |
rfaI |
-15.09 |
0.114319 |
193 -- 209 |
157 -- 173 |
lipopolysaccharide 1 3-galactosyltransferase |
stm3717 |
_____________192_______________210\n_____________|_________________|\n5'-AUG...AAAAG___________A_____AAAUA...GGA-3'\n______________UGAUCACUAUG_GCAGA\n______________|:|||||||||_:||||\n______________AUUAGUGAUAC_UGUCU\n3'-UUU...AUGUA___________C_____GUCCC...UCA-5'\n_____________|_________________|\n_____________174_______________156\n |
197 -- 203 |
163 -- 169 |
-20.9664 kcal/mol |
2.81615 kcal/mol |
3.98136 kcal/mol |
192 210@LB@ | |@LB@5'-AUG...AAAAG A AAAUA...GGA-3'@LB@ UGAUCACUAUG GCAGA@LB@ |:||||||||| :||||@LB@ AUUAGUGAUAC UGUCU@LB@3'-UUU...AUGUA C GUCCC...UCA-5'@LB@ | |@LB@ 174 156@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -20.9664 kcal/mol@LB@Unfolding Energy - mRNA 2.81615 kcal/mol@LB@Unfolding Energy - sRNA 3.98136 kcal/mol@LB@@LB@Position - mRNA 193 -- 209@LB@Position - sRNA 157 -- 173@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 163 -- 169@LB@ |
| 147 |
0.007823 |
0.1845 |
stm3477 |
cysG |
-15.08 |
0.114738 |
192 -- 245 |
61 -- 111 |
uroporphyrinogen-III C-methyltransferase |
|
_____________191____________________________________________246\n_____________|______________________________________________|\n5'-UCC...UAAGG___AAU____________U____CU___UUUUGU____U_______CGCGA...AAG-3'\n______________GGU____GUCGUGGACCA_UUGC__AUA______CAAU_ACGCGAC\n______________|||____:|||::|||||_||||__|:|______|||:_||:|:||\n______________CCA____UAGCGUCUGGU_AACG__UGU______GUUG_UGUGUUG\n3'-UUU...UGGCA___GACU___________U____UU_____________U_______UAGUG...UCA-5'\n_____________|______________________________________________|\n_____________112____________________________________________60\n |
230 -- 236 |
72 -- 78 |
-36.0085 kcal/mol |
10.6439 kcal/mol |
13.6111 kcal/mol |
191 246@LB@ | |@LB@5'-UCC...UAAGG AAU U CU UUUUGU U CGCGA...AAG-3'@LB@ GGU GUCGUGGACCA UUGC AUA CAAU ACGCGAC@LB@ ||| :|||::||||| |||| |:| |||: ||:|:||@LB@ CCA UAGCGUCUGGU AACG UGU GUUG UGUGUUG@LB@3'-UUU...UGGCA GACU U UU U UAGUG...UCA-5'@LB@ | |@LB@ 112 60@LB@@LB@@LB@Energy -15.08 kcal/mol@LB@Hybridization Energy -36.0085 kcal/mol@LB@Unfolding Energy - mRNA 10.6439 kcal/mol@LB@Unfolding Energy - sRNA 13.6111 kcal/mol@LB@@LB@Position - mRNA 192 -- 245@LB@Position - sRNA 61 -- 111@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 167 |
0.009062 |
0.1932 |
stm2673 |
rplS |
-14.99 |
0.118272 |
119 -- 180 |
38 -- 88 |
50S ribosomal protein L19 |
|
_____________118_________________181\n_____________|___________________|\n5'-GAU...GUUCA_____G____C________GCAGC...UUG-3'\n______________AAACA_AACA_GCACAACA\n______________|||||_||||_:|||||||\n______________UUUGU_UUGU_UGUGUUGU\n3'-UUU...UAACG_____G_____________AGUGU...UCA-5'\n_____________|___________________|\n_____________89__________________37\n |
126 -- 132 |
71 -- 77 |
-18.964 kcal/mol |
3.18358 kcal/mol |
3.68874 kcal/mol |
118 181@LB@ | |@LB@5'-GAU...GUUCA G C GCAGC...UUG-3'@LB@ AAACA AACA GCACAACA@LB@ ||||| |||| :|||||||@LB@ UUUGU UUGU UGUGUUGU@LB@3'-UUU...UAACG G AGUGU...UCA-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -18.964 kcal/mol@LB@Unfolding Energy - mRNA 3.18358 kcal/mol@LB@Unfolding Energy - sRNA 3.68874 kcal/mol@LB@@LB@Position - mRNA 119 -- 180@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 34 |
0.001111 |
0.1164 |
stm2746 |
N/A |
-14.94 |
0.120804 |
53 -- 101 |
36 -- 90 |
putative excinuclease ATPase subunit |
stm4494 stm3753 |
_____________52_____________________102\n_____________|______________________|\n5'-GGA...UUGAA____UA_________U______UCAAG...AUG-3'\n______________GCAA__ACAACAACG__ACAUU\n______________||||__||||||||:__||||:\n______________CGUU__UGUUGUUGU__UGUAG\n3'-UUU...GUUAA____UG_________GU_____UGUUG...UCA-5'\n_____________|______________________|\n_____________91_____________________35\n |
61 -- 67 |
76 -- 82 |
-20.4267 kcal/mol |
3.3222 kcal/mol |
4.33922 kcal/mol |
52 102@LB@ | |@LB@5'-GGA...UUGAA UA U UCAAG...AUG-3'@LB@ GCAA ACAACAACG ACAUU@LB@ |||| ||||||||: ||||:@LB@ CGUU UGUUGUUGU UGUAG@LB@3'-UUU...GUUAA UG GU UGUUG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -14.94 kcal/mol@LB@Hybridization Energy -20.4267 kcal/mol@LB@Unfolding Energy - mRNA 3.3222 kcal/mol@LB@Unfolding Energy - sRNA 4.33922 kcal/mol@LB@@LB@Position - mRNA 53 -- 101@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 22 |
0.0005859 |
0.08814 |
stm1976 |
fliM |
-14.91 |
0.122150 |
23 -- 60 |
38 -- 69 |
flagellar motor switch protein FliM |
|
_____________22_____________________________________61\n_____________|______________________________________|\n5'-AAA...AAGUG_________CU____UUGUUGUUUU_____________CGCCG...GCG-3'\n______________CGCAGCCGU__GCUG__________CCCGUCAGAAUGC\n______________|:||:||||__||::__________|||:||||||::|\n______________GUGUUGGCA__CGGU__________GGGUAGUCUUGUG\n3'-UUU...UUGUA_________UU____UUUC___________________CGUAA...UCA-5'\n_____________|______________________________________|\n_____________70_____________________________________37\n |
49 -- 55 |
43 -- 49 |
-35.5971 kcal/mol |
10.3893 kcal/mol |
19.1758 kcal/mol |
22 61@LB@ | |@LB@5'-AAA...AAGUG CU UUGUUGUUUU CGCCG...GCG-3'@LB@ CGCAGCCGU GCUG CCCGUCAGAAUGC@LB@ |:||:|||| ||:: |||:||||||::|@LB@ GUGUUGGCA CGGU GGGUAGUCUUGUG@LB@3'-UUU...UUGUA UU UUUC CGUAA...UCA-5'@LB@ | |@LB@ 70 37@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -35.5971 kcal/mol@LB@Unfolding Energy - mRNA 10.3893 kcal/mol@LB@Unfolding Energy - sRNA 19.1758 kcal/mol@LB@@LB@Position - mRNA 23 -- 60@LB@Position - sRNA 38 -- 69@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 146 |
0.007509 |
0.1831 |
stm1510 |
ydfH |
-14.80 |
0.126744 |
211 -- 261 |
32 -- 88 |
GntR family transcriptional regulator |
|
_____________210_____________________________________________________262\n_____________|_______________________________________________________|\n5'-UGA...AAAAA__AA____GAAU_____UCG___________UUAACCCU_______CUGU_____AGCAA...GCA-3'\n______________GU__GAAU____GACCG_____AAACGCAGC________ACACAGC____CAACC\n______________||__||||____||||:_____||||:||:|________|||||:|____|||||\n______________CA__CUUA____CUGGU_____UUUGUGUUG________UGUGUUG____GUUGG\n3'-UUU...GGCAC__GA____GCGU_____UAACG_________U______________UAGU_____CAUUC...UCA-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________31\n |
228 -- 234 |
72 -- 78 |
-34.0267 kcal/mol |
5.39256 kcal/mol |
17.9909 kcal/mol |
210 262@LB@ | |@LB@5'-UGA...AAAAA AA GAAU UCG UUAACCCU CUGU AGCAA...GCA-3'@LB@ GU GAAU GACCG AAACGCAGC ACACAGC CAACC@LB@ || |||| ||||: ||||:||:| |||||:| |||||@LB@ CA CUUA CUGGU UUUGUGUUG UGUGUUG GUUGG@LB@3'-UUU...GGCAC GA GCGU UAACG U UAGU CAUUC...UCA-5'@LB@ | |@LB@ 89 31@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -34.0267 kcal/mol@LB@Unfolding Energy - mRNA 5.39256 kcal/mol@LB@Unfolding Energy - sRNA 17.9909 kcal/mol@LB@@LB@Position - mRNA 211 -- 261@LB@Position - sRNA 32 -- 88@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 72 -- 78@LB@ |
