20 |
0.0004512 |
0.08034 |
stm2384 |
aroC |
-21.00 |
0.011794 |
171 -- 223 |
39 -- 90 |
chorismate synthase |
|
_____________170___________________224\n_____________|_____________________|\n5'-GUU...AACAC______G________G_____GGAGC...GCA-3'\n______________GCAAAC_ACAACAAC_AUAAC\n______________||||||_||||||||_|:|||\n______________CGUUUG_UGUUGUUG_UGUUG\n3'-UUU...GUUAA_____________________UAGUG...UCA-5'\n_____________|_____________________|\n_____________91____________________38\n |
179 -- 185 |
77 -- 83 |
-22.4295 kcal/mol |
1.97696 kcal/mol |
3.80362 kcal/mol |
170 224@LB@ | |@LB@5'-GUU...AACAC G G GGAGC...GCA-3'@LB@ GCAAAC ACAACAAC AUAAC@LB@ |||||| |||||||| |:|||@LB@ CGUUUG UGUUGUUG UGUUG@LB@3'-UUU...GUUAA UAGUG...UCA-5'@LB@ | |@LB@ 91 38@LB@@LB@@LB@Energy -21.00 kcal/mol@LB@Hybridization Energy -22.4295 kcal/mol@LB@Unfolding Energy - mRNA 1.97696 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 171 -- 223@LB@Position - sRNA 39 -- 90@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 77 -- 83@LB@ |
103 |
0.005167 |
0.1728 |
stm2670 |
aroF |
-17.31 |
0.049328 |
173 -- 242 |
25 -- 90 |
3-deoxy-7-phosphoheptulonate synthase |
|
_____________172______________________________________________________________________243\n_____________|________________________________________________________________________|\n5'-CUU...CUAUC_______AGAA__G____G_____C___AU____A_____A_G____U___UAACG_______CA_______ACAGG...AGG-3'\n______________GCAAACA____AA_ACAG_AUCGC_AUC____GC_AAAAG_C_CG_C_GAA_____UACGUAU__CCGAUGA\n______________|||||||____||_|||:_|||:|_|:|____||_|||||_|_|:_|_|||_____:|||:||__|||||:|\n______________CGUUUGU____UU_UGUU_UAGUG_UGG____CG_UUUUC_G_GU_G_CUU_____GUGCGUA__GGCUAUU\n3'-UUU...GUUAA_______GUUG__G____G_____U___CAUU__G_______G__A_U_______________A________UUGAA...UCA-5'\n_____________|________________________________________________________________________|\n_____________91_______________________________________________________________________24\n |
226 -- 232 |
34 -- 40 |
-46.7665 kcal/mol |
10.372 kcal/mol |
24.1795 kcal/mol |
172 243@LB@ | |@LB@5'-CUU...CUAUC AGAA G G C AU A A G U UAACG CA ACAGG...AGG-3'@LB@ GCAAACA AA ACAG AUCGC AUC GC AAAAG C CG C GAA UACGUAU CCGAUGA@LB@ ||||||| || |||: |||:| |:| || ||||| | |: | ||| :|||:|| |||||:|@LB@ CGUUUGU UU UGUU UAGUG UGG CG UUUUC G GU G CUU GUGCGUA GGCUAUU@LB@3'-UUU...GUUAA GUUG G G U CAUU G G A U A UUGAA...UCA-5'@LB@ | |@LB@ 91 24@LB@@LB@@LB@Energy -17.31 kcal/mol@LB@Hybridization Energy -46.7665 kcal/mol@LB@Unfolding Energy - mRNA 10.372 kcal/mol@LB@Unfolding Energy - sRNA 24.1795 kcal/mol@LB@@LB@Position - mRNA 173 -- 242@LB@Position - sRNA 25 -- 90@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 34 -- 40@LB@ |
38 |
0.001379 |
0.1215 |
stm0150 |
aroP |
-12.21 |
0.313123 |
213 -- 232 |
63 -- 83 |
APC family aromatic amino acid transporter |
|
_____________212_________________________233\n_____________|___________________________|\n5'-CAU...UGAUG____GU_____________A_______CAAGC...UGU-3'\n______________GACA__CAGCAGCACGGCG__GCAGCU\n______________:|||__||:||:|||::|:__:||:|:\n______________UUGU__GUUGUUGUGUUGU__UGUUGG\n3'-UUU...AACGU___________________AG______CAUUC...UCA-5'\n_____________|___________________________|\n_____________84__________________________62\n |
219 -- 225 |
71 -- 77 |
-26.8853 kcal/mol |
7.73214 kcal/mol |
8.28637 kcal/mol |
212 233@LB@ | |@LB@5'-CAU...UGAUG GU A CAAGC...UGU-3'@LB@ GACA CAGCAGCACGGCG GCAGCU@LB@ :||| ||:||:|||::|: :||:|:@LB@ UUGU GUUGUUGUGUUGU UGUUGG@LB@3'-UUU...AACGU AG CAUUC...UCA-5'@LB@ | |@LB@ 84 62@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -26.8853 kcal/mol@LB@Unfolding Energy - mRNA 7.73214 kcal/mol@LB@Unfolding Energy - sRNA 8.28637 kcal/mol@LB@@LB@Position - mRNA 213 -- 232@LB@Position - sRNA 63 -- 83@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 71 -- 77@LB@ |
55 |
0.002114 |
0.1363 |
stm0887 |
artJ |
-12.89 |
0.249853 |
160 -- 177 |
72 -- 90 |
arginine ABC transporter substrate-binding protein |
|
_____________159_________________178\n_____________|___________________|\n5'-AUG...AUGCC___________________CAUAA...CGU-3'\n______________GCAGACACGGC_GCAUAAU\n______________|||:||||::|_:||:||:\n______________CGUUUGUGUUG_UGUGUUG\n3'-UUU...GUUAA___________U_______UAGUG...UCA-5'\n_____________|___________________|\n_____________91__________________71\n |
171 -- 177 |
72 -- 78 |
-21.0424 kcal/mol |
4.03353 kcal/mol |
3.80362 kcal/mol |
159 178@LB@ | |@LB@5'-AUG...AUGCC CAUAA...CGU-3'@LB@ GCAGACACGGC GCAUAAU@LB@ |||:||||::| :||:||:@LB@ CGUUUGUGUUG UGUGUUG@LB@3'-UUU...GUUAA U UAGUG...UCA-5'@LB@ | |@LB@ 91 71@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -21.0424 kcal/mol@LB@Unfolding Energy - mRNA 4.03353 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 160 -- 177@LB@Position - sRNA 72 -- 90@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 72 -- 78@LB@ |
10 |
0.0001468 |
0.05229 |
stm0680 |
asnB |
-17.15 |
0.052408 |
158 -- 224 |
32 -- 90 |
asparagine synthetase B |
|
_____________157________________________225\n_____________|__________________________|\n5'-CAU...GUCAA_________AAAAGU___________GAUUA...CGG-3'\n______________GCAAAUACA______ACGACGCAACA\n______________|||||:|||______||:||:|||||\n______________CGUUUGUGU______UGUUGUGUUGU\n3'-UUU...GUUAA__________________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________31\n |
177 -- 183 |
71 -- 77 |
-23.872 kcal/mol |
3.8402 kcal/mol |
3.80671 kcal/mol |
157 225@LB@ | |@LB@5'-CAU...GUCAA AAAAGU GAUUA...CGG-3'@LB@ GCAAAUACA ACGACGCAACA@LB@ |||||:||| ||:||:|||||@LB@ CGUUUGUGU UGUUGUGUUGU@LB@3'-UUU...GUUAA AGUGU...UCA-5'@LB@ | |@LB@ 91 31@LB@@LB@@LB@Energy -17.15 kcal/mol@LB@Hybridization Energy -23.872 kcal/mol@LB@Unfolding Energy - mRNA 3.8402 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 158 -- 224@LB@Position - sRNA 32 -- 90@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 71 -- 77@LB@ |
94 |
0.0043 |
0.1596 |
stm3866 |
atpG |
-16.85 |
0.058909 |
206 -- 253 |
35 -- 80 |
F0F1 ATP synthase subunit gamma |
|
_____________205______________________254\n_____________|________________________|\n5'-GGU...CAAAA________AA_C______G_U___CGCCG...GUA-3'\n______________GAUCACUA__G_GAUGGA_A_GGU\n______________:|||||||__|_||::||_|_|||\n______________UUAGUGAU__C_CUGUCU_U_CCA\n3'-UUU...UGUAA________A_________G_C___UUUAC...UCA-5'\n_____________|________________________|\n_____________81_______________________34\n |
258 -- 264 |
165 -- 171 |
-17.4899 kcal/mol |
5.94142 kcal/mol |
3.53572 kcal/mol |
205 254@LB@ | |@LB@5'-GGU...CAAAA AA C G U CGCCG...GUA-3'@LB@ GAUCACUA G GAUGGA A GGU@LB@ :||||||| | ||::|| | |||@LB@ UUAGUGAU C CUGUCU U CCA@LB@3'-UUU...UGUAA A G C UUUAC...UCA-5'@LB@ | |@LB@ 81 34@LB@@LB@@LB@Energy -16.85 kcal/mol@LB@Hybridization Energy -17.4899 kcal/mol@LB@Unfolding Energy - mRNA 5.94142 kcal/mol@LB@Unfolding Energy - sRNA 3.53572 kcal/mol@LB@@LB@Position - mRNA 206 -- 253@LB@Position - sRNA 35 -- 80@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 165 -- 171@LB@ |
124 |
0.006123 |
0.1758 |
stm0794 |
bioB |
-18.46 |
0.031660 |
1 -- 37 |
38 -- 79 |
biotin synthase |
|
______________1________________38\n______________|________________|\n___________5'-_________________UUCGG...AGC-3'\n______________AAC_CAGC_UCGCAGCC\n______________|||_||:|_||:||:||\n______________UUG_GUUG_AGUGUUGG\n3'-UUU...UGUUG___U____U________CAUUC...UCA-5'\n_____________|_________________|\n_____________80________________37\n |
9 -- 15 |
63 -- 69 |
-17.7754 kcal/mol |
2.27351 kcal/mol |
6.48115 kcal/mol |
1 38@LB@ | |@LB@ 5'- UUCGG...AGC-3'@LB@ AAC CAGC UCGCAGCC@LB@ ||| ||:| ||:||:||@LB@ UUG GUUG AGUGUUGG@LB@3'-UUU...UGUUG U U CAUUC...UCA-5'@LB@ | |@LB@ 80 37@LB@@LB@@LB@Energy -18.46 kcal/mol@LB@Hybridization Energy -17.7754 kcal/mol@LB@Unfolding Energy - mRNA 2.27351 kcal/mol@LB@Unfolding Energy - sRNA 6.48115 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 38 -- 79@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 63 -- 69@LB@ |
5 |
6.363e-05 |
0.04123 |
stm0399 |
brnQ |
-24.27 |
0.003272 |
169 -- 224 |
36 -- 81 |
branched-chain amino acid transport system II carrier protein |
|
_____________168_______________________________________________________________225\n_____________|_________________________________________________________________|\n5'-AAC...UUUAA___U_________U________C_____G_A_____A__UUAU_A________UUAAAAU_____GAUAU...UCG-3'\n______________UGU___UACAACA_CAC__CAU_CACAG_C_GUAAG_CU____G_CCCAUCAG_______CGCGC\n______________||:___:||||||_|||__|||_||||:_|_|||||_|:____|_||||||||_______|:|||\n______________ACG___GUGUUGU_GUG__GUA_GUGUU_G_CAUUC_GG____C_GGGUAGUC_______GUGCG\n3'-UUU...GGUUA___UUU_______U___UU_________G__________UUUU__________UU__________UAAGG...UCA-5'\n_____________|_________________________________________________________________|\n_____________82________________________________________________________________35\n |
205 -- 211 |
44 -- 50 |
-45.9704 kcal/mol |
7.09165 kcal/mol |
22.503 kcal/mol |
168 225@LB@ | |@LB@5'-AAC...UUUAA U U C G A A UUAU A UUAAAAU GAUAU...UCG-3'@LB@ UGU UACAACA CAC CAU CACAG C GUAAG CU G CCCAUCAG CGCGC@LB@ ||: :|||||| ||| ||| ||||: | ||||| |: | |||||||| |:|||@LB@ ACG GUGUUGU GUG GUA GUGUU G CAUUC GG C GGGUAGUC GUGCG@LB@3'-UUU...GGUUA UUU U UU G UUUU UU UAAGG...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -24.27 kcal/mol@LB@Hybridization Energy -45.9704 kcal/mol@LB@Unfolding Energy - mRNA 7.09165 kcal/mol@LB@Unfolding Energy - sRNA 22.503 kcal/mol@LB@@LB@Position - mRNA 169 -- 224@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 44 -- 50@LB@ |
108 |
0.005311 |
0.1728 |
stm2183 |
cdd |
-16.35 |
0.071230 |
31 -- 68 |
151 -- 187 |
cytidine deaminase |
|
_____________30_________________69\n_____________|__________________|\n5'-UGG...AGAUC_____UUAA_________GGCCC...UGA-3'\n______________ACAUA____GACAUAGCA\n______________|||:|____:|||:|:||\n______________UGUGU____UUGUGUUGU\n3'-UUU...ACGUU_____UG___________AGUGU...UCA-5'\n_____________|__________________|\n_____________188________________150\n |
150 -- 156 |
71 -- 77 |
-12.389 kcal/mol |
1.12571 kcal/mol |
3.50787 kcal/mol |
30 69@LB@ | |@LB@5'-UGG...AGAUC UUAA GGCCC...UGA-3'@LB@ ACAUA GACAUAGCA@LB@ |||:| :|||:|:||@LB@ UGUGU UUGUGUUGU@LB@3'-UUU...ACGUU UG AGUGU...UCA-5'@LB@ | |@LB@ 188 150@LB@@LB@@LB@Energy -16.35 kcal/mol@LB@Hybridization Energy -12.389 kcal/mol@LB@Unfolding Energy - mRNA 1.12571 kcal/mol@LB@Unfolding Energy - sRNA 3.50787 kcal/mol@LB@@LB@Position - mRNA 31 -- 68@LB@Position - sRNA 151 -- 187@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 71 -- 77@LB@ |
110 |
0.005337 |
0.1728 |
stm1920 |
cheW |
-12.58 |
0.277263 |
149 -- 192 |
51 -- 90 |
chemotaxis protein CheW |
|
_____________148__________193\n_____________|____________|\n5'-GUC...UGAUU____________AAUAA...UCC-3'\n______________GAGUGAGAAGGG\n______________:|||||:||:||\n______________UUCACUUUUUCC\n3'-UUU...UGUCC____________CAUCA...UCA-5'\n_____________|____________|\n_____________91___________50\n |
188 -- 194 |
128 -- 134 |
-15.4894 kcal/mol |
2.64754 kcal/mol |
3.77328 kcal/mol |
148 193@LB@ | |@LB@5'-GUC...UGAUU AAUAA...UCC-3'@LB@ GAGUGAGAAGGG@LB@ :|||||:||:||@LB@ UUCACUUUUUCC@LB@3'-UUU...UGUCC CAUCA...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -15.4894 kcal/mol@LB@Unfolding Energy - mRNA 2.64754 kcal/mol@LB@Unfolding Energy - sRNA 3.77328 kcal/mol@LB@@LB@Position - mRNA 149 -- 192@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 128 -- 134@LB@ |