Freiburg RNA Tools
ExpaRNA 8764869

Input and runtime details for job 8764869 (precomputed example)

Input Parameter

? Sequence Input in FASTA Format[.fa]

Scoring Parameter

? Minimal size of included substructures7
? Maximal number of used substructuresall
? EPM scoring just EPM size (default)

Output Parameter

? Write ExpaRNA result as alignment into text fileno
? Write ExpaRNA results as list in fileno
? Write all EPMs into fileno

Job ID 8764869 (server version unknown)

?Job Submitted & Queued@ Fri Jan 11 16:15:00 CET 2013
?ExpaRNA Started@ Fri Jan 11 16:15:12 CET 2013
?ExpaRNA Finished & Post-Processing@ Fri Jan 11 16:15:13 CET 2013
?Post-Processing Finished@ Fri Jan 11 16:15:30 CET 2013
?Job Completed@ Fri Jan 11 16:15:32 CET 2013
 DIRECT ACCESS: ( 30 days expiry )

Output parameters

? Write ExpaRNA result as input for LocARNA with anchor constraints[.fa]

Description of the job

large example

Alignment of two long ncRNAs with pre-defined structures.

Output download complete results [zip]

Feed the Anchor Constraints" produced by ExpaRNA into the LocARNA tool.

Graphical output

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Sequence 1 Sequence 2
download   [.pdf]   [.ps]   [.png]   download   [.pdf]   [.ps]   [.png]  

Job resubmission

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Feeds the job parameters to the input page to resubmit the job.

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When using ExpaRNA please cite :

Results are computed with ExpaRNA version 1.0.0 linking Vienna RNA package 1.8.5