Freiburg RNA Tools
ExpaRNA 7235457

Input and runtime details for job 7235457 (precomputed example)

Input Parameter

? Sequence Input in FASTA Format[.fa]

Scoring Parameter

? Minimal size of included substructures7
? Maximal number of used substructuresall
? EPM scoring just EPM size (default)

Output Parameter

? Write ExpaRNA result as alignment into text fileno
? Write ExpaRNA results as list in fileno
? Write all EPMs into fileno

Job ID 7235457 (server version unknown)

?Job Submitted & Queued@ Fri Jan 11 16:14:43 CET 2013
?ExpaRNA Started@ Fri Jan 11 16:14:57 CET 2013
?ExpaRNA Finished & Post-Processing@ Fri Jan 11 16:14:58 CET 2013
?Post-Processing Finished@ Fri Jan 11 16:15:05 CET 2013
?Job Completed@ Fri Jan 11 16:15:06 CET 2013
 DIRECT ACCESS: ( 30 days expiry )

Output parameters

? Write ExpaRNA result as input for LocARNA with anchor constraints[.fa]

Description of the job

small example

Alignment of two relatively small ncRNAs without pre-defined structure. Here, the minimum free energy structure is computed and used for the alignment.

Output download complete results [zip]

Feed the Anchor Constraints" produced by ExpaRNA into the LocARNA tool.

Graphical output

magnifier Click on the image to enlarge it.

Sequence 1 Sequence 2
download   [.pdf]   [.ps]   [.png]   download   [.pdf]   [.ps]   [.png]  

Job resubmission

Use the following button if you want to resubmit the job with altered input or parameterization:
Feeds the job parameters to the input page to resubmit the job.

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When using ExpaRNA please cite :

Results are computed with ExpaRNA version 1.0.0 linking Vienna RNA package 1.8.5