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CRISPRloci 5825354

Input and runtime details for job 5825354 (precomputed example)

Input Parameters

? Sequence(s)[.fa]
? Sequence type Virus DNA/RNA sequence(s) (FASTA format)

Genome information

? DNA sequence completeness complete

Parameters concerning CRISPR arrays

? CRISPR array orientation prediction Yes
? ML model to use all
? Detect the IS-element Yes
? Compute degenerated repeat Yes
? Fast run mode No
? Enhancement of the predicted array Yes
? Enhancement of the start and end of the array Yes
? Min. repeat length in the array21
? Max. repeat length in the array55
? Min. spacer length in the array18
? Max. spacer length in the array78
? Min. number of repeats in the array3
? Max. edit distance for evaluated array enhancement6
? Max. number of identical spacers in the array4
? Max. number of consecutive identical spacers in the array3
? Max. length of the spacer's margin for the degenerated search30

Parameters concerning Cas genes

? ML model to run combination of both
? Select the classifiers ERT
? Select the regressors ERT
? Max. number of contiguous gaps in a cassette2

Parameters for CRISPR repeat input

? Hit sensitivity (e-value threshold)0.01

Parameters for Virus DNA/RNA input

? Hit sensitivity (e-value threshold)0.000001

Job ID 5825354 (server version trunk)

?Job Submitted & Queued@ Thu Dec 17 15:33:36 CET 2020
?CRISPRloci Started@ Thu Dec 17 15:33:54 CET 2020
?CRISPRloci Finished & Post-Processing@ Thu Dec 17 15:34:25 CET 2020
?Job Completed@ Thu Dec 17 15:34:29 CET 2020
 DIRECT ACCESS: https://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=5825354&toolName=CRISPRloci ( 30 days expiry )

Description of the job

Genomic region of of Sulfolobus islandicus rod-shaped virus 8 (NC_034623)

? Overview of CRISPR-Cas system on the genome

Zoom:     Download CRISPR-Cas system    
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Viral DNA Results

Sort by selecting a column name. [Download Table Data]
ID Start End Acc.Nr ArrayID Array.Loc Array.Size Organism Num.Host.Spacers e-Value
Protospacer1 193 233 AE006641 8 1811198_1815558 66 Spacers Sulfolobus-solfataricus-P2 17 3e-11
Protospacer2 193 233 ACUK01000127 1 210_4570 66 Spacers Saccharolobus-solfataricus-98/2-contig127 17 3e-11
Protospacer3 6950 6990 LOBW01000074 1 77_4353 66 Spacers Thermocladium-sp.-ECH_B-100231 17 3.34e-12
Protospacer4 7797 7837 LOBW01000074 1 77_4353 66 Spacers Thermocladium-sp.-ECH_B-100231 17 3e-11
Protospacer5 9083 9128 AE006641 7 1809772_1811222 22 Spacers Sulfolobus-solfataricus-P2 2 1.0000000000000001e-11
Protospacer6 9614 9652 LOBW01000074 1 77_4353 66 Spacers Thermocladium-sp.-ECH_B-100231 17 2.19e-08
Protospacer7 11288 11328 CP011056 5 2557814_2558227 6 Spacers Saccharolobus-solfataricus-strain-SARC-C-chromosome 5 2.43e-09
Protospacer8 11288 11328 ACUK01000010 1 2373_2786 6 Spacers Saccharolobus-solfataricus-98/2-contig10 5 2.43e-09
Protospacer9 11288 11328 CP011057 5 2557814_2558227 6 Spacers Sulfolobus-solfataricus-strain-SULA 5 2.43e-09
Protospacer10 11288 11328 CP011055 5 2557814_2558227 6 Spacers Saccharolobus-solfataricus-strain-SARC-B-chromosome 5 2.43e-09
Protospacer11 11289 11328 AE006641 6 1744006_1744418 6 Spacers Sulfolobus-solfataricus-P2 5 7.290000000000001e-09
Protospacer12 13294 13331 AE006641 8 1811198_1815558 66 Spacers Sulfolobus-solfataricus-P2 17 6.559999999999999e-08
Protospacer13 13294 13331 ACUK01000127 1 210_4570 66 Spacers Saccharolobus-solfataricus-98/2-contig127 17 6.559999999999999e-08
Protospacer14 15867 15908 ACUK01000096 1 4104_11436 115 Spacers Saccharolobus-solfataricus-98/2-contig96 2 7.290000000000001e-09
Protospacer15 15867 15908 CP011057 1 2112739_2120133 116 Spacers Sulfolobus-solfataricus-strain-SULA 6 7.290000000000001e-09
Protospacer16 15867 15908 CP011055 1 2112739_2120133 116 Spacers Saccharolobus-solfataricus-strain-SARC-B-chromosome 6 7.290000000000001e-09
Protospacer17 15867 15908 CP011056 1 2112739_2120133 116 Spacers Saccharolobus-solfataricus-strain-SARC-C-chromosome 6 7.290000000000001e-09
Protospacer18 17866 17901 AE006641 1 1233466_1239960 102 Spacers Sulfolobus-solfataricus-P2 1 8.1e-10
Protospacer19 17948 17982 AE006641 8 1811198_1815558 66 Spacers Sulfolobus-solfataricus-P2 17 2.19e-08
Protospacer20 17948 17982 ACUK01000127 1 210_4570 66 Spacers Saccharolobus-solfataricus-98/2-contig127 17 2.19e-08
Protospacer21 22384 22422 LOBW01000074 1 77_4353 66 Spacers Thermocladium-sp.-ECH_B-100231 17 2.19e-08
Protospacer22 23602 23639 ACUK01000271 1 17_1074 16 Spacers Saccharolobus-solfataricus-98/2-contig274 1 8.1e-10
Protospacer23 23602 23639 AE006641 7 1809772_1811222 22 Spacers Sulfolobus-solfataricus-P2 2 8.1e-10
Protospacer24 23903 23943 CP002425 1 725209_732591 114 Spacers Sulfolobus-islandicus-REY15A 2 3e-11
Protospacer25 24991 25030 ACUK01000127 1 210_4570 66 Spacers Saccharolobus-solfataricus-98/2-contig127 17 6.559999999999999e-08
Protospacer26 24991 25030 AE006641 8 1811198_1815558 66 Spacers Sulfolobus-solfataricus-P2 17 6.559999999999999e-08
Protospacer27 26287 26327 CP002425 1 725209_732591 114 Spacers Sulfolobus-islandicus-REY15A 2 2.43e-09
Protospacer28 26897 26940 AE006641 8 1811198_1815558 66 Spacers Sulfolobus-solfataricus-P2 17 1.1100000000000001e-12
Protospacer29 26897 26940 ACUK01000127 1 210_4570 66 Spacers Saccharolobus-solfataricus-98/2-contig127 17 1.1100000000000001e-12
Protospacer30 28559 28597 CP011055 1 2112739_2120133 116 Spacers Saccharolobus-solfataricus-strain-SARC-B-chromosome 6 2.19e-08
Protospacer31 28559 28597 CP011057 1 2112739_2120133 116 Spacers Sulfolobus-solfataricus-strain-SULA 6 2.19e-08
Protospacer32 28559 28597 ACUK01000096 1 4104_11436 115 Spacers Saccharolobus-solfataricus-98/2-contig96 2 2.19e-08
Protospacer33 28559 28597 CP011056 1 2112739_2120133 116 Spacers Saccharolobus-solfataricus-strain-SARC-C-chromosome 6 2.19e-08
Protospacer34 32235 32276 ACUK01000127 1 210_4570 66 Spacers Saccharolobus-solfataricus-98/2-contig127 17 8.1e-10
Protospacer35 32235 32276 AE006641 8 1811198_1815558 66 Spacers Sulfolobus-solfataricus-P2 17 8.1e-10
Protospacer36 32945 32985 LOBW01000074 1 77_4353 66 Spacers Thermocladium-sp.-ECH_B-100231 17 3.34e-12

Details for selection from above

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Results are computed with CRISPRloci version 1.1.0