CLUSTAL W --- LocARNA 1.9.1 ......................................................................................................((................ DroMel_CAF1 GGUGCUAUAACUUUUAAAUAGCUAGUCUUAUACUCCCGAAAGUAUUACGAAAAUGUGAAGAUCCACCUAAAUAUUUACCAGAAAAUGAUCUCCAUUUAAGCCGAUUCACUUUACCAAACU DroYak_CAF1 AGGACUUUAACUUUCAGAUAGCCAGUCUUAUACUUCCGAGAAUAUUGAGAU-AUGGGAAGAUCCACCUGAAUACUCACCAGAUAAGGAUCUCCACCCAAGCCGCAUUGCUUUACCAACUU DroSec_CAF1 GGUGCUAUAACUUUUAGAUAGCUAGUCUU------UCGAAAGUAUUUCGAAAAUUUGAAGAUACACCUGAAUACUCACCGGAAAUG----------------AU--C-----ACCAGUCU .............................------...................................................----------------((--.-----........ .))......................((.(((((.......((((..((((((((.................................)))))))).)))).......))))).))..... DroMel_CAF1 GGAAAAUUCUCCGAUGAAUGCUAAACACAUUUCUCACACACCUGAAAUUUUGCUCAACCGGAUCGUUGGCCAUAAUGGCAGCGGUUCAGCAAGAUACAGGCGCGAAUGAAAUGUGUUGCC DroYak_CAF1 UGCAAAUCCUCCGAUGAAUGCUAAACAAAUUUCUCACACACCUGAAAUUUUGCUCAACCGGAUCGAAGACCAUAAUUGUAACGGUUCAGCAAGAUACAGGCGCGAAUGAAAUAUGCCGCC DroSec_CAF1 GAUAAAUCCUCCGAUGAAUGCUAAACACAUUUCUCACACACCUGAAAUUUUGCUCAACCGGAUCGUUGGCCAUGAUGGCAGCGGUUCAGCAAGAUACAGGCGCGAAUGAAAUGUGCCGCC .))......................((.(((((.......((((..((((((((.................................)))))))).)))).......))))).))..... ..................................................-..................... DroMel_CAF1 AAAGGACUUUGGUGUCAACGAGGACGAAAUGAAUCACCAUGUA--------CCACCACUGAAUCAGCACUUG DroYak_CAF1 AAAGGACUU-GGACACAACCAGGAC-AAAUGAAUCACCAAGUAGAUAUGA-CUAGCACUGGAACUGCGUG-U DroSec_CAF1 AAAGGACUUGGUUGUCAGCCAGGACGAAAUGAAUCACCAUUUAAGUAGCAAGUAACACUGAAUCAACACUUG ........................................................................