CLUSTAL W --- LocARNA 1.9.1 .((((((.....((...(((.((--((((............)))))).)))...))....))))))........--....(((((((...(((...--(((.((..((............ ACA7 ACCUCCUGGGAUCGCAUCUGG-A--GAGUGCCUA-----GUAUUCUGCCAGCUUCGGAAAGGGAGGGAAAGCAA--GCCUGGCAGAGGCACCCAUU--CCAUUCCCAGCUUGCUCCGUAG ACA5 UGCAGCC-GUGUCAAAUUCAGUA--CCUGUCCUAUGCAUGGUAGGCACUGGCCCAG--AAGGCUGCCACAGAAA----CACUGUGACUCAUGGGCC--CUGUUCCUGUGUC--------- ACA30 UGGCACU-----UUCACAGUUCC--UUCCCCAGGCAGUGGGGCCAGGAUUUGGUAGCU--GGUGCUGAGAGAAA--ACCCUUGAUUGUAU-----U--CUUGCCCUGGGAUUAU-----A ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCC------CAGCUGGCCCAUGGGUGACCCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAU-----GUAG .((((((.....((...(((.((..((((......------)))))).)))...))....))))))..............(((((((...(((.....(((.((..((...-----.... #A1 ...................................................................AAAAAA............................................... #A2 ...................................................................123456............................................... ))...)).)))..)))-......))))-)))---....... ACA7 CUGGCGAUUGGAAGAC-A-----CUCU-GCG-------ACA ACA5 CCAG-GCUCAGGGAUA-AAUUUGGUUA-CAG-------ACA ACA30 CCAGUGGCAA---------CUGUCACU-CAA---UGGGACA ACA59 UGAG-GGUAACAAUACUUACUCUCGUUGGUGAUAAGGAACA ))..-)).)))..))).......)))).))).......... #A1 ......................................BBB #A2 ......................................123