Amino sequence:
M S F C S F F G G E V F Q N H F E P G V Y V C A K C S Y E L F S S H S K Y A H S S P W P A F T E T I H P D S V T K C P E K N R P E A L K V S C G K C G N G L G H E F L N D G P K R G Q S R F C I F S S S L K F V P K G K E A A A S Q G H

Maximal number of optional bonds/antibonds: 9
Insertion Penalty: -10   Deletion Penalty: -5


origSeq:    I F S S S L K F V P K G K E 
optimalSeq: I F S S L P G L V P K G K E 

optimal NucleotideSequence: 
AUUUUCUCUUCGCUACCAGGUCUGGUGCCAAAAGGAAAAGAA

Score: 43   optional bonds/antibonds: 7
insertion-deletions: 0
Wanted Structure: [,[[[[[{[[/((.((((....))))))\]]}]]]]]]....
--------------------------------------------------------
************************* 
Parameters of RNAinverse: 
************************* 
* SearchStrategy:           Full Local Search
* mode: mfe -> pf
* Minimal valid similarity: -1e+06
* new sim compared to last sim: 0
* difference factor during LS:  0.7
* some bases favored at unpaired pos.: 0
********************************************
start_struct:     ..(((((.((.((.((((....)))))).)).))))).....   (0.04)
mfe_start_struct: .((((((.((.((.((((....)))))).)).))))))....   (0.19)  valid
****************
*   mfe-mode   *
****************

OriginalSimilarity (Orig&Orig): 69
StartSimilarity (Origin&Start): 43

Original-AA-Sequence: IFSSSLKFVPKGKE
Start-AA-Sequence:    IFSSLPGLVPKGKE
End-AA-Sequence:      SFSSLPGLVPKGKE

StartSequence(before starting RNAinverse):     (Prob.)     (Sim.)
AUUUUCUCUUCGCUACCAGGUCUGGUGCCAAAAGGAAAAGAA     (0.04)      (43)

BestRNAinverseSequence:                                    (Sim.)
AGUUUCUCUUCGCUACCAGGUCUGGUGCCAAAAGGAAAAGAA                 (37) 

Wanted Structure:                              (Prob.)
..(((((.((.((.((((....)))))).)).))))).....     (0.17)


****************
*    pf-mode   *
****************

OriginalSimilarity (Orig&Orig): 69
StartSimilarity (Origin&Start): 37

Original-AA-Sequence: IFSSSLKFVPKGKE
Start-AA-Sequence:    SFSSLPGLVPKGKE
End-AA-Sequence:      KFSSLAGLLPKGQE

StartSequence(before starting pf-mode):        (Prob.)     (Sim.)
AGUUUCUCUUCGCUACCAGGUCUGGUGCCAAAAGGAAAAGAA     (0.17)      (37)

BestRNAinverseSequence:                                    (Sim.)
AAGUUCUCUUCGCUAGCAGGUCUGCUGCCAAAAGGACAAGAA                 (31) 

Wanted Structure:                              (Prob.)
..(((((.((.((.((((....)))))).)).))))).....     (0.58)