| 104 |
0.005232 |
0.1728 |
stm0744 |
ybgC |
-16.85 |
0.058772 |
132 -- 175 |
54 -- 90 |
tol-pal system-associated acyl-CoA thioesterase |
|
_____________131_____________________________176\n_____________|_______________________________|\n5'-CUU...ACAAG____U____________UCUUGA________GGCGG...AAA-3'\n______________GCGA_AUACAACGGCAU______GGCAUUAC\n______________||:|_|:|||||::||:______::|||:||\n______________CGUU_UGUGUUGUUGUG______UUGUAGUG\n3'-UUU...GUUAA_______________________________UUGGC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________53\n |
156 -- 162 |
67 -- 73 |
-23.8418 kcal/mol |
6.2547 kcal/mol |
5.68203 kcal/mol |
131 176@LB@ | |@LB@5'-CUU...ACAAG U UCUUGA GGCGG...AAA-3'@LB@ GCGA AUACAACGGCAU GGCAUUAC@LB@ ||:| |:|||||::||: ::|||:||@LB@ CGUU UGUGUUGUUGUG UUGUAGUG@LB@3'-UUU...GUUAA UUGGC...UCA-5'@LB@ | |@LB@ 91 53@LB@@LB@@LB@Energy -16.85 kcal/mol@LB@Hybridization Energy -23.8418 kcal/mol@LB@Unfolding Energy - mRNA 6.2547 kcal/mol@LB@Unfolding Energy - sRNA 5.68203 kcal/mol@LB@@LB@Position - mRNA 132 -- 175@LB@Position - sRNA 54 -- 90@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 163 |
0.008532 |
0.1864 |
stm3093 |
endA |
-16.58 |
0.065141 |
135 -- 160 |
72 -- 101 |
deoxyribonuclease I |
|
_____________134___________________________________161\n_____________|_____________________________________|\n5'-CCA...CUUUC_____________________U_______________UUUCG...CGG-3'\n______________CUGA___GCGGACUGAUUGCA_ACA____GACACAAC\n______________||||___||:|||::||||||_|||____:|||||||\n______________GACU___CGUCUGGUUAACGU_UGU____UUGUGUUG\n3'-UUU...CACCA____UAG______________U___GUUG________UAGUG...UCA-5'\n_____________|_____________________________________|\n_____________102___________________________________71\n |
154 -- 160 |
72 -- 78 |
-36.4155 kcal/mol |
5.60666 kcal/mol |
13.5432 kcal/mol |
134 161@LB@ | |@LB@5'-CCA...CUUUC U UUUCG...CGG-3'@LB@ CUGA GCGGACUGAUUGCA ACA GACACAAC@LB@ |||| ||:|||::|||||| ||| :|||||||@LB@ GACU CGUCUGGUUAACGU UGU UUGUGUUG@LB@3'-UUU...CACCA UAG U GUUG UAGUG...UCA-5'@LB@ | |@LB@ 102 71@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -36.4155 kcal/mol@LB@Unfolding Energy - mRNA 5.60666 kcal/mol@LB@Unfolding Energy - sRNA 13.5432 kcal/mol@LB@@LB@Position - mRNA 135 -- 160@LB@Position - sRNA 72 -- 101@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 62 |
0.003015 |
0.1596 |
stm1299 |
gdhA |
-15.31 |
0.105026 |
136 -- 171 |
63 -- 91 |
glutamate dehydrogenase |
|
_____________135____________________________________172\n_____________|______________________________________|\n5'-CGG...AAAAC__________UAUUCUGAUAA_______A_________ACAUU...CCA-3'\n______________UGCAAAUACA___________AACGCAA___UACAACC\n______________||||||:|||___________|||:|||___:||||||\n______________ACGUUUGUGU___________UUGUGUU___GUGUUGG\n3'-UUU...GGUUA__________UG________________GUA_______CAUUC...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________62\n |
165 -- 171 |
63 -- 69 |
-26.3361 kcal/mol |
2.66287 kcal/mol |
8.61685 kcal/mol |
135 172@LB@ | |@LB@5'-CGG...AAAAC UAUUCUGAUAA A ACAUU...CCA-3'@LB@ UGCAAAUACA AACGCAA UACAACC@LB@ ||||||:||| |||:||| :||||||@LB@ ACGUUUGUGU UUGUGUU GUGUUGG@LB@3'-UUU...GGUUA UG GUA CAUUC...UCA-5'@LB@ | |@LB@ 92 62@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -26.3361 kcal/mol@LB@Unfolding Energy - mRNA 2.66287 kcal/mol@LB@Unfolding Energy - sRNA 8.61685 kcal/mol@LB@@LB@Position - mRNA 136 -- 171@LB@Position - sRNA 63 -- 91@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 138 |
0.007086 |
0.182 |
stm0624 |
citC |
-16.00 |
0.081371 |
136 -- 192 |
38 -- 93 |
[citrate (pro-3S)-lyase] ligase |
stm0058 |
_____________135___________________________193\n_____________|_____________________________|\n5'-AAA...AUCAA________________________A____GAAAA...AUA-3'\n______________GUUGC_AACACA___GCGCAACAU_UACA\n______________:||||_||||||___:|:||||||_:|||\n______________UAACG_UUGUGU___UGUGUUGUA_GUGU\n3'-UUU...CUGGU_____U______UGU______________UGGCA...UCA-5'\n_____________|_____________________________|\n_____________94____________________________37\n |
149 -- 155 |
70 -- 76 |
-24.6588 kcal/mol |
7.05918 kcal/mol |
6.32558 kcal/mol |
135 193@LB@ | |@LB@5'-AAA...AUCAA A GAAAA...AUA-3'@LB@ GUUGC AACACA GCGCAACAU UACA@LB@ :|||| |||||| :|:|||||| :|||@LB@ UAACG UUGUGU UGUGUUGUA GUGU@LB@3'-UUU...CUGGU U UGU UGGCA...UCA-5'@LB@ | |@LB@ 94 37@LB@@LB@@LB@Energy -16.00 kcal/mol@LB@Hybridization Energy -24.6588 kcal/mol@LB@Unfolding Energy - mRNA 7.05918 kcal/mol@LB@Unfolding Energy - sRNA 6.32558 kcal/mol@LB@@LB@Position - mRNA 136 -- 192@LB@Position - sRNA 38 -- 93@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 49 |
0.001802 |
0.1291 |
stm1787 |
N/A |
-18.29 |
0.033902 |
137 -- 202 |
34 -- 90 |
[Ni/Fe] hydrogenase large subunit |
|
_____________136__________________203\n_____________|____________________|\n5'-GGC...CCAAC________C___________GUUAG...GCG-3'\n______________GUAAACGC_ACAA_ACAACA\n______________|:||||:|_||||_||||||\n______________CGUUUGUG_UGUU_UGUUGU\n3'-UUU...GUUAA________U____G______AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________33\n |
138 -- 144 |
83 -- 89 |
-18.7581 kcal/mol |
1.39906 kcal/mol |
3.80671 kcal/mol |
136 203@LB@ | |@LB@5'-GGC...CCAAC C GUUAG...GCG-3'@LB@ GUAAACGC ACAA ACAACA@LB@ |:||||:| |||| ||||||@LB@ CGUUUGUG UGUU UGUUGU@LB@3'-UUU...GUUAA U G AGUGU...UCA-5'@LB@ | |@LB@ 91 33@LB@@LB@@LB@Energy -18.29 kcal/mol@LB@Hybridization Energy -18.7581 kcal/mol@LB@Unfolding Energy - mRNA 1.39906 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 137 -- 202@LB@Position - sRNA 34 -- 90@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 129 |
0.006472 |
0.1774 |
stm0158 |
acnB |
-11.80 |
0.356459 |
140 -- 172 |
33 -- 60 |
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
|
_____________139________________173\n_____________|__________________|\n5'-AUU...CUUUU_________G_U______UUAAA...UGC-3'\n______________UUGUAAACA_A_UAACAC\n______________|||:|||||_|_:|||||\n______________AACGUUUGU_U_GUUGUG\n3'-UUU...UGGUU_________G_U______UUGUA...UCA-5'\n_____________|__________________|\n_____________61_________________32\n |
48 -- 54 |
84 -- 90 |
-17.8051 kcal/mol |
3.41045 kcal/mol |
3.73018 kcal/mol |
139 173@LB@ | |@LB@5'-AUU...CUUUU G U UUAAA...UGC-3'@LB@ UUGUAAACA A UAACAC@LB@ |||:||||| | :|||||@LB@ AACGUUUGU U GUUGUG@LB@3'-UUU...UGGUU G U UUGUA...UCA-5'@LB@ | |@LB@ 61 32@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -17.8051 kcal/mol@LB@Unfolding Energy - mRNA 3.41045 kcal/mol@LB@Unfolding Energy - sRNA 3.73018 kcal/mol@LB@@LB@Position - mRNA 140 -- 172@LB@Position - sRNA 33 -- 60@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 133 |
0.006689 |
0.1774 |
stm0831 |
dps |
-13.05 |
0.236755 |
141 -- 176 |
159 -- 184 |
DNA starvation/stationary phase protection protein Dps |
|
_____________140________________________177\n_____________|__________________________|\n5'-CAU...UUACC___CA_______AACU__________AAUUG...UUA-3'\n______________CAC__AACAGCA____CGUC_UAACC\n______________|||__||||:||____|:||_:||||\n______________GUG__UUGUUGU____GUAG_GUUGG\n3'-UUU...CGUUU____________GUU_____U_____CAUUC...UCA-5'\n_____________|__________________________|\n_____________185________________________158\n |
37 -- 43 |
76 -- 82 |
-18.4678 kcal/mol |
1.39739 kcal/mol |
8.25195 kcal/mol |
140 177@LB@ | |@LB@5'-CAU...UUACC CA AACU AAUUG...UUA-3'@LB@ CAC AACAGCA CGUC UAACC@LB@ ||| ||||:|| |:|| :||||@LB@ GUG UUGUUGU GUAG GUUGG@LB@3'-UUU...CGUUU GUU U CAUUC...UCA-5'@LB@ | |@LB@ 185 158@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -18.4678 kcal/mol@LB@Unfolding Energy - mRNA 1.39739 kcal/mol@LB@Unfolding Energy - sRNA 8.25195 kcal/mol@LB@@LB@Position - mRNA 141 -- 176@LB@Position - sRNA 159 -- 184@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 39 |
0.001399 |
0.1215 |
stm4007 |
glnA |
-20.44 |
0.014679 |
143 -- 217 |
36 -- 106 |
type I glutamate--ammonia ligase |
|
_____________142_____________________________________________________________________________218\n_____________|_______________________________________________________________________________|\n5'-CAC...CAGCA______A_____UC____UAC_____________C___G_C___U___GGA____A____UAU_______U________UUUGA...CGA-3'\n______________GAAUUG_AGAUC____GU___CACGACGAC_CGA_CAU_A_CAA_CCG___GAGU_CAAG___GUCCG_C_GAACACGU\n______________||||:|_|||:|____|:___|||:||:||_|:|_|||_|_|||_|||___:||:_|||:___|:||:_|_|||||||:\n______________CUUAGC_UCUGG____CG___GUGUUGUUG_GUU_GUA_U_GUU_GGC___UUCG_GUUU___CGGGU_G_CUUGUGCG\n3'-UUU...CCAGA______G_____UUAA__UUU_________U_______G_________A___________U_______A_U________UAAGG...UCA-5'\n_____________|_______________________________________________________________________________|\n_____________107_____________________________________________________________________________35\n |
211 -- 217 |
36 -- 42 |
-55.3576 kcal/mol |
10.964 kcal/mol |
31.8708 kcal/mol |
142 218@LB@ | |@LB@5'-CAC...CAGCA A UC UAC C G C U GGA A UAU U UUUGA...CGA-3'@LB@ GAAUUG AGAUC GU CACGACGAC CGA CAU A CAA CCG GAGU CAAG GUCCG C GAACACGU@LB@ ||||:| |||:| |: |||:||:|| |:| ||| | ||| ||| :||: |||: |:||: | |||||||:@LB@ CUUAGC UCUGG CG GUGUUGUUG GUU GUA U GUU GGC UUCG GUUU CGGGU G CUUGUGCG@LB@3'-UUU...CCAGA G UUAA UUU U G A U A U UAAGG...UCA-5'@LB@ | |@LB@ 107 35@LB@@LB@@LB@Energy -20.44 kcal/mol@LB@Hybridization Energy -55.3576 kcal/mol@LB@Unfolding Energy - mRNA 10.964 kcal/mol@LB@Unfolding Energy - sRNA 31.8708 kcal/mol@LB@@LB@Position - mRNA 143 -- 217@LB@Position - sRNA 36 -- 106@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 2 |
2.663e-05 |
0.04123 |
stm2355 |
argT |
-17.69 |
0.042680 |
144 -- 202 |
34 -- 91 |
histidine ABC transporter substrate-binding protein HisJ |
|
_____________143____________________203\n_____________|______________________|\n5'-UUA...AAGUC_________________C____AAAAC...AUA-3'\n______________UGCAAACAC_ACAACGC_ACGU\n______________|||||||||_|||||:|_||:|\n______________ACGUUUGUG_UGUUGUG_UGUA\n3'-UUU...GGUUA_________U_______U____GUGUU...UCA-5'\n_____________|______________________|\n_____________92_____________________33\n |
153 -- 159 |
75 -- 81 |
-25.653 kcal/mol |
2.98604 kcal/mol |
4.21448 kcal/mol |
143 203@LB@ | |@LB@5'-UUA...AAGUC C AAAAC...AUA-3'@LB@ UGCAAACAC ACAACGC ACGU@LB@ ||||||||| |||||:| ||:|@LB@ ACGUUUGUG UGUUGUG UGUA@LB@3'-UUU...GGUUA U U GUGUU...UCA-5'@LB@ | |@LB@ 92 33@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -25.653 kcal/mol@LB@Unfolding Energy - mRNA 2.98604 kcal/mol@LB@Unfolding Energy - sRNA 4.21448 kcal/mol@LB@@LB@Position - mRNA 144 -- 202@LB@Position - sRNA 34 -- 91@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 100 |
0.00495 |
0.1728 |
stm1879 |
ptrB |
-19.83 |
0.018631 |
144 -- 223 |
40 -- 120 |
oligopeptidase B |
|
_____________143____________________________________________224\n_____________|______________________________________________|\n5'-AAG...UAUAA_________________AAGAAAAA_____A___U___________AAUCG...AGC-3'\n______________CAAAUAU__UAACGCAA________ACGAC_UGU__GCCAAAAGCC\n______________||||:|:__:|||:|||________||:||_:||__||||||||||\n______________GUUUGUG__GUUGUGUU________UGUUG_GCA__CGGUUUUCGG\n3'-UUU...UUAAC_______UU________GUAG_____________UU__________GUAGU...UCA-5'\n_____________|______________________________________________|\n_____________121____________________________________________39\n |
209 -- 215 |
49 -- 55 |
-34.4525 kcal/mol |
3.62291 kcal/mol |
15.2208 kcal/mol |
143 224@LB@ | |@LB@5'-AAG...UAUAA AAGAAAAA A U AAUCG...AGC-3'@LB@ CAAAUAU UAACGCAA ACGAC UGU GCCAAAAGCC@LB@ ||||:|: :|||:||| ||:|| :|| ||||||||||@LB@ GUUUGUG GUUGUGUU UGUUG GCA CGGUUUUCGG@LB@3'-UUU...UUAAC UU GUAG UU GUAGU...UCA-5'@LB@ | |@LB@ 121 39@LB@@LB@@LB@Energy -19.83 kcal/mol@LB@Hybridization Energy -34.4525 kcal/mol@LB@Unfolding Energy - mRNA 3.62291 kcal/mol@LB@Unfolding Energy - sRNA 15.2208 kcal/mol@LB@@LB@Position - mRNA 144 -- 223@LB@Position - sRNA 40 -- 120@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 49 -- 55@LB@ |
