53 |
0.002045 |
0.1363 |
stm1876 |
holE |
-16.46 |
0.068295 |
21 -- 75 |
31 -- 90 |
DNA polymerase III subunit theta |
|
_____________20__________________________________________76\n_____________|___________________________________________|\n5'-CGU...UGCCA_______GUAA___UA___________G___C__A________AUAUU...UGC-3'\n______________GC_AGCA____AGC__AACGUCGCGAU_GUG_AG__AGAAGCC\n______________||_|:||____|:|__|||:||:|:|:_||:_||__|:|||||\n______________CG_UUGU____UUG__UUGUAGUGUUG_CAU_UC__UUUUCGG\n3'-UUU...GUUAA__U____GUUG___UG___________G______GG_______GUAGU...UCA-5'\n_____________|___________________________________________|\n_____________91__________________________________________30\n |
55 -- 61 |
49 -- 55 |
-35.8289 kcal/mol |
10.2843 kcal/mol |
15.2217 kcal/mol |
20 76@LB@ | |@LB@5'-CGU...UGCCA GUAA UA G C A AUAUU...UGC-3'@LB@ GC AGCA AGC AACGUCGCGAU GUG AG AGAAGCC@LB@ || |:|| |:| |||:||:|:|: ||: || |:|||||@LB@ CG UUGU UUG UUGUAGUGUUG CAU UC UUUUCGG@LB@3'-UUU...GUUAA U GUUG UG G GG GUAGU...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -16.46 kcal/mol@LB@Hybridization Energy -35.8289 kcal/mol@LB@Unfolding Energy - mRNA 10.2843 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 21 -- 75@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 49 -- 55@LB@ |
54 |
0.002071 |
0.1363 |
stm1429 |
ydhB |
-17.23 |
0.050879 |
3 -- 45 |
36 -- 79 |
putative LysR family transcriptional regulator |
|
_____________2___________________________________46\n_____________|___________________________________|\n5'-CAA...UAUCA________UU__CGCA___________________UUACG...UCA-3'\n______________GACAGACA__GU____GAGUGU__AGGGAGUGAAA\n______________||||||||__||____:|:|||__|||:|||||||\n______________CUGUCUGU__CA____UUUACA__UCCUUCACUUU\n3'-UUU...GAUAC________CC____________UG___________UUCCC...UCA-5'\n_____________|___________________________________|\n_____________80__________________________________35\n |
136 -- 142 |
132 -- 138 |
-30.0385 kcal/mol |
9.87391 kcal/mol |
6.0649 kcal/mol |
2 46@LB@ | |@LB@5'-CAA...UAUCA UU CGCA UUACG...UCA-3'@LB@ GACAGACA GU GAGUGU AGGGAGUGAAA@LB@ |||||||| || :|:||| |||:|||||||@LB@ CUGUCUGU CA UUUACA UCCUUCACUUU@LB@3'-UUU...GAUAC CC UG UUCCC...UCA-5'@LB@ | |@LB@ 80 35@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -30.0385 kcal/mol@LB@Unfolding Energy - mRNA 9.87391 kcal/mol@LB@Unfolding Energy - sRNA 6.0649 kcal/mol@LB@@LB@Position - mRNA 3 -- 45@LB@Position - sRNA 36 -- 79@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 132 -- 138@LB@ |
55 |
0.002114 |
0.1363 |
stm0887 |
artJ |
-12.89 |
0.249853 |
160 -- 177 |
72 -- 90 |
arginine ABC transporter substrate-binding protein |
|
_____________159_________________178\n_____________|___________________|\n5'-AUG...AUGCC___________________CAUAA...CGU-3'\n______________GCAGACACGGC_GCAUAAU\n______________|||:||||::|_:||:||:\n______________CGUUUGUGUUG_UGUGUUG\n3'-UUU...GUUAA___________U_______UAGUG...UCA-5'\n_____________|___________________|\n_____________91__________________71\n |
171 -- 177 |
72 -- 78 |
-21.0424 kcal/mol |
4.03353 kcal/mol |
3.80362 kcal/mol |
159 178@LB@ | |@LB@5'-AUG...AUGCC CAUAA...CGU-3'@LB@ GCAGACACGGC GCAUAAU@LB@ |||:||||::| :||:||:@LB@ CGUUUGUGUUG UGUGUUG@LB@3'-UUU...GUUAA U UAGUG...UCA-5'@LB@ | |@LB@ 91 71@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -21.0424 kcal/mol@LB@Unfolding Energy - mRNA 4.03353 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 160 -- 177@LB@Position - sRNA 72 -- 90@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 72 -- 78@LB@ |
56 |
0.002144 |
0.1363 |
pslt006 |
repA |
-15.36 |
0.103288 |
219 -- 279 |
36 -- 87 |
DNA replication |
|
_____________218_____________________280\n_____________|_______________________|\n5'-ACU...ACACC_______UGUU____U_______CGACA...CCC-3'\n______________CGAACAC_____CAC__CAUUAC\n______________|:|||||_____|||__|||:||\n______________GUUUGUG_____GUG__GUAGUG\n3'-UUU...UUAAC_______UUGUU___UU______UUGGC...UCA-5'\n_____________|_______________________|\n_____________88______________________35\n |
225 -- 231 |
83 -- 89 |
-15.7114 kcal/mol |
3.78124 kcal/mol |
5.66809 kcal/mol |
218 280@LB@ | |@LB@5'-ACU...ACACC UGUU U CGACA...CCC-3'@LB@ CGAACAC CAC CAUUAC@LB@ |:||||| ||| |||:||@LB@ GUUUGUG GUG GUAGUG@LB@3'-UUU...UUAAC UUGUU UU UUGGC...UCA-5'@LB@ | |@LB@ 88 35@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -15.7114 kcal/mol@LB@Unfolding Energy - mRNA 3.78124 kcal/mol@LB@Unfolding Energy - sRNA 5.66809 kcal/mol@LB@@LB@Position - mRNA 219 -- 279@LB@Position - sRNA 36 -- 87@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 83 -- 89@LB@ |
57 |
0.002298 |
0.14 |
stm3921 |
wecC |
-19.39 |
0.022107 |
89 -- 132 |
46 -- 91 |
UDP-N-acetyl-D-mannosamine dehydrogenase |
|
_____________88_____________________________________133\n_____________|______________________________________|\n5'-ACC...GCGUC___U__________AAAUG____________A______GCGCC...AUA-3'\n______________UGC__GCACGACGA_____AAUAUCA_AACC_UGAGCC\n______________|||__:|||:||:|_____||:||||_||||_|:||||\n______________ACG__UGUGUUGUU_____UUGUAGU_UUGG_AUUCGG\n3'-UUU...GGUUA___UU_________GUG_________G____C______UUUUC...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________45\n |
107 -- 113 |
68 -- 74 |
-32.9193 kcal/mol |
8.51619 kcal/mol |
11.8308 kcal/mol |
88 133@LB@ | |@LB@5'-ACC...GCGUC U AAAUG A GCGCC...AUA-3'@LB@ UGC GCACGACGA AAUAUCA AACC UGAGCC@LB@ ||| :|||:||:| ||:|||| |||| |:||||@LB@ ACG UGUGUUGUU UUGUAGU UUGG AUUCGG@LB@3'-UUU...GGUUA UU GUG G C UUUUC...UCA-5'@LB@ | |@LB@ 92 45@LB@@LB@@LB@Energy -19.39 kcal/mol@LB@Hybridization Energy -32.9193 kcal/mol@LB@Unfolding Energy - mRNA 8.51619 kcal/mol@LB@Unfolding Energy - sRNA 11.8308 kcal/mol@LB@@LB@Position - mRNA 89 -- 132@LB@Position - sRNA 46 -- 91@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 68 -- 74@LB@ |
59 |
0.00232 |
0.14 |
stm4105 |
metF |
-16.51 |
0.066936 |
223 -- 245 |
40 -- 59 |
methylenetetrahydrofolate reductase [NAD(P)H] |
|
_____________222__________________246\n_____________|____________________|\n5'-AAG...UUUAC__________AUA_______GCGAU...GCA-3'\n______________AACACAACAA___AUAACAU\n______________||||||||||___|:|||||\n______________UUGUGUUGUU___UGUUGUA\n3'-UUU...AACGU__________G_________GUGUU...UCA-5'\n_____________|____________________|\n_____________60___________________39\n |
175 -- 181 |
70 -- 76 |
-16.6304 kcal/mol |
0.675865 kcal/mol |
3.87174 kcal/mol |
222 246@LB@ | |@LB@5'-AAG...UUUAC AUA GCGAU...GCA-3'@LB@ AACACAACAA AUAACAU@LB@ |||||||||| |:|||||@LB@ UUGUGUUGUU UGUUGUA@LB@3'-UUU...AACGU G GUGUU...UCA-5'@LB@ | |@LB@ 60 39@LB@@LB@@LB@Energy -16.51 kcal/mol@LB@Hybridization Energy -16.6304 kcal/mol@LB@Unfolding Energy - mRNA 0.675865 kcal/mol@LB@Unfolding Energy - sRNA 3.87174 kcal/mol@LB@@LB@Position - mRNA 223 -- 245@LB@Position - sRNA 40 -- 59@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 70 -- 76@LB@ |
60 |
0.002585 |
0.1534 |
stm0758 |
ybgR |
-11.90 |
0.345594 |
235 -- 293 |
32 -- 91 |
cation transporter |
|
_____________234_________________________294\n_____________|___________________________|\n5'-GGU...ACACC___CG___G__________U_______CUGCU...UCC-3'\n______________UGC__AAA_AUAAUAAUGC__CGUCGC\n______________|||__|||_|:||:||::|__|:||:|\n______________ACG__UUU_UGUUGUUGUG__GUAGUG\n3'-UUU...GGUUA________G__________UU______UUGGC...UCA-5'\n_____________|___________________________|\n_____________92__________________________31\n |
247 -- 253 |
75 -- 81 |
-19.147 kcal/mol |
4.2306 kcal/mol |
5.6854 kcal/mol |
234 294@LB@ | |@LB@5'-GGU...ACACC CG G U CUGCU...UCC-3'@LB@ UGC AAA AUAAUAAUGC CGUCGC@LB@ ||| ||| |:||:||::| |:||:|@LB@ ACG UUU UGUUGUUGUG GUAGUG@LB@3'-UUU...GGUUA G UU UUGGC...UCA-5'@LB@ | |@LB@ 92 31@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -19.147 kcal/mol@LB@Unfolding Energy - mRNA 4.2306 kcal/mol@LB@Unfolding Energy - sRNA 5.6854 kcal/mol@LB@@LB@Position - mRNA 235 -- 293@LB@Position - sRNA 32 -- 91@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 75 -- 81@LB@ |
61 |
0.002902 |
0.1596 |
stm3567 |
livJ |
-18.03 |
0.037474 |
150 -- 196 |
40 -- 87 |
high-affinity branched-chain amino acid transporter |
|
_____________149_______________________197\n_____________|_________________________|\n5'-CGG...ACAAU_____C____________A______AGAAU...CCG-3'\n______________AACAC_ACAACACA_CGU_ACAACC\n______________|||||_||||||||_|:|_||||||\n______________UUGUG_UGUUGUGU_GUA_UGUUGG\n3'-UUU...AACGU_____U________U___G______CAUUC...UCA-5'\n_____________|_________________________|\n_____________88________________________39\n |
157 -- 163 |
74 -- 80 |
-27.1738 kcal/mol |
3.63117 kcal/mol |
8.28637 kcal/mol |
149 197@LB@ | |@LB@5'-CGG...ACAAU C A AGAAU...CCG-3'@LB@ AACAC ACAACACA CGU ACAACC@LB@ ||||| |||||||| |:| ||||||@LB@ UUGUG UGUUGUGU GUA UGUUGG@LB@3'-UUU...AACGU U U G CAUUC...UCA-5'@LB@ | |@LB@ 88 39@LB@@LB@@LB@Energy -18.03 kcal/mol@LB@Hybridization Energy -27.1738 kcal/mol@LB@Unfolding Energy - mRNA 3.63117 kcal/mol@LB@Unfolding Energy - sRNA 8.28637 kcal/mol@LB@@LB@Position - mRNA 150 -- 196@LB@Position - sRNA 40 -- 87@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 74 -- 80@LB@ |
62 |
0.003015 |
0.1596 |
stm1299 |
gdhA |
-15.31 |
0.105026 |
136 -- 171 |
63 -- 91 |
glutamate dehydrogenase |
|
_____________135____________________________________172\n_____________|______________________________________|\n5'-CGG...AAAAC__________UAUUCUGAUAA_______A_________ACAUU...CCA-3'\n______________UGCAAAUACA___________AACGCAA___UACAACC\n______________||||||:|||___________|||:|||___:||||||\n______________ACGUUUGUGU___________UUGUGUU___GUGUUGG\n3'-UUU...GGUUA__________UG________________GUA_______CAUUC...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________62\n |
165 -- 171 |
63 -- 69 |
-26.3361 kcal/mol |
2.66287 kcal/mol |
8.61685 kcal/mol |
135 172@LB@ | |@LB@5'-CGG...AAAAC UAUUCUGAUAA A ACAUU...CCA-3'@LB@ UGCAAAUACA AACGCAA UACAACC@LB@ ||||||:||| |||:||| :||||||@LB@ ACGUUUGUGU UUGUGUU GUGUUGG@LB@3'-UUU...GGUUA UG GUA CAUUC...UCA-5'@LB@ | |@LB@ 92 62@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -26.3361 kcal/mol@LB@Unfolding Energy - mRNA 2.66287 kcal/mol@LB@Unfolding Energy - sRNA 8.61685 kcal/mol@LB@@LB@Position - mRNA 136 -- 171@LB@Position - sRNA 63 -- 91@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 63 -- 69@LB@ |
63 |
0.003024 |
0.1596 |
stm3563 |
livH |
-16.49 |
0.067433 |
27 -- 175 |
36 -- 184 |
branched-chain amino acid ABC transporter permease LivH |
|
_____________26_____________176\n_____________|______________|\n5'-GAU...GAAAU______________CGAUC...ACG-3'\n______________GGGA_UGAAAAAGG\n______________||:|_|||||||||\n______________CCUU_ACUUUUUCC\n3'-UUU...CAUGU____C_________CAUCA...UCA-5'\n_____________|______________|\n_____________185____________35\n |
65 -- 71 |
128 -- 134 |
-14.2251 kcal/mol |
3.55711 kcal/mol |
3.77758 kcal/mol |
26 176@LB@ | |@LB@5'-GAU...GAAAU CGAUC...ACG-3'@LB@ GGGA UGAAAAAGG@LB@ ||:| |||||||||@LB@ CCUU ACUUUUUCC@LB@3'-UUU...CAUGU C CAUCA...UCA-5'@LB@ | |@LB@ 185 35@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -14.2251 kcal/mol@LB@Unfolding Energy - mRNA 3.55711 kcal/mol@LB@Unfolding Energy - sRNA 3.77758 kcal/mol@LB@@LB@Position - mRNA 27 -- 175@LB@Position - sRNA 36 -- 184@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 128 -- 134@LB@ |