| 72 |
0.003348 |
0.1596 |
stm0849 |
yliB |
-19.23 |
0.023527 |
175 -- 193 |
139 -- 162 |
glutathione ABC transporter substrate-binding protein GsiB |
|
_____________174______________________194\n_____________|________________________|\n5'-GUU...AUUCA____________UU__________GAACA...CGG-3'\n______________GACAGGCAGGGU_______CAGGA\n______________|||||:||||||_______|||||\n______________CUGUCUGUCCCA_______GUCCU\n3'-UUU...GAUAC____________UUUACAU_____UCACU...UCA-5'\n_____________|________________________|\n_____________163______________________138\n |
180 -- 186 |
151 -- 157 |
-27.2027 kcal/mol |
3.52422 kcal/mol |
3.69132 kcal/mol |
174 194@LB@ | |@LB@5'-GUU...AUUCA UU GAACA...CGG-3'@LB@ GACAGGCAGGGU CAGGA@LB@ |||||:|||||| |||||@LB@ CUGUCUGUCCCA GUCCU@LB@3'-UUU...GAUAC UUUACAU UCACU...UCA-5'@LB@ | |@LB@ 163 138@LB@@LB@@LB@Energy -19.23 kcal/mol@LB@Hybridization Energy -27.2027 kcal/mol@LB@Unfolding Energy - mRNA 3.52422 kcal/mol@LB@Unfolding Energy - sRNA 3.69132 kcal/mol@LB@@LB@Position - mRNA 175 -- 193@LB@Position - sRNA 139 -- 162@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 151 -- 157@LB@ |
| 189 |
0.01049 |
0.1967 |
stm0871 |
ybjM |
-13.57 |
0.197684 |
34 -- 53 |
71 -- 89 |
similar to E. coli orf hypothetical protein (AAC73935.1); Blastp hit to AAC73935.1 (125 aa) 72% identity in aa 1 - 125 |
|
_____________33___________________54\n_____________|____________________|\n5'-AAU...GCAUC______AA____________AUAUA...GCG-3'\n______________CAAAUA__AACAACACAACA\n______________||||:|__||||||||||||\n______________GUUUGU__UUGUUGUGUUGU\n3'-UUU...UUAAC______G_____________AGUGU...UCA-5'\n_____________|____________________|\n_____________90___________________70\n |
47 -- 53 |
71 -- 77 |
-19.7565 kcal/mol |
2.01075 kcal/mol |
3.79866 kcal/mol |
33 54@LB@ | |@LB@5'-AAU...GCAUC AA AUAUA...GCG-3'@LB@ CAAAUA AACAACACAACA@LB@ ||||:| ||||||||||||@LB@ GUUUGU UUGUUGUGUUGU@LB@3'-UUU...UUAAC G AGUGU...UCA-5'@LB@ | |@LB@ 90 70@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -19.7565 kcal/mol@LB@Unfolding Energy - mRNA 2.01075 kcal/mol@LB@Unfolding Energy - sRNA 3.79866 kcal/mol@LB@@LB@Position - mRNA 34 -- 53@LB@Position - sRNA 71 -- 89@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 55 |
0.002114 |
0.1363 |
stm0887 |
artJ |
-12.89 |
0.249853 |
160 -- 177 |
72 -- 90 |
arginine ABC transporter substrate-binding protein |
|
_____________159_________________178\n_____________|___________________|\n5'-AUG...AUGCC___________________CAUAA...CGU-3'\n______________GCAGACACGGC_GCAUAAU\n______________|||:||||::|_:||:||:\n______________CGUUUGUGUUG_UGUGUUG\n3'-UUU...GUUAA___________U_______UAGUG...UCA-5'\n_____________|___________________|\n_____________91__________________71\n |
171 -- 177 |
72 -- 78 |
-21.0424 kcal/mol |
4.03353 kcal/mol |
3.80362 kcal/mol |
159 178@LB@ | |@LB@5'-AUG...AUGCC CAUAA...CGU-3'@LB@ GCAGACACGGC GCAUAAU@LB@ |||:||||::| :||:||:@LB@ CGUUUGUGUUG UGUGUUG@LB@3'-UUU...GUUAA U UAGUG...UCA-5'@LB@ | |@LB@ 91 71@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -21.0424 kcal/mol@LB@Unfolding Energy - mRNA 4.03353 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 160 -- 177@LB@Position - sRNA 72 -- 90@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 11 |
0.0001804 |
0.05681 |
stm0959 |
lrp |
-12.80 |
0.257711 |
163 -- 181 |
139 -- 159 |
leucine-responsive transcriptional regulator |
|
_____________162_______________________________________________182\n_____________|_________________________________________________|\n5'-UGA...AGAGU________A_____GA________UAC______ACAAUAAUAAU_____AUAGC...AGC-3'\n______________CAGGCAGG_GUAGG_____AGGAA___AGAGAG___________GGUAG\n______________|||:||||_|||::_____|||||___|:|:||___________|||||\n______________GUCUGUCC_CAUUU_____UCCUU___UUUUUC___________CCAUC\n3'-UUU...UACCU______________ACAUG_____CAC______________________AGAGC...UCA-5'\n_____________|_________________________________________________|\n_____________160_______________________________________________138\n |
163 -- 169 |
153 -- 159 |
-28.6161 kcal/mol |
5.81197 kcal/mol |
10.0349 kcal/mol |
162 182@LB@ | |@LB@5'-UGA...AGAGU A GA UAC ACAAUAAUAAU AUAGC...AGC-3'@LB@ CAGGCAGG GUAGG AGGAA AGAGAG GGUAG@LB@ |||:|||| |||:: ||||| |:|:|| |||||@LB@ GUCUGUCC CAUUU UCCUU UUUUUC CCAUC@LB@3'-UUU...UACCU ACAUG CAC AGAGC...UCA-5'@LB@ | |@LB@ 160 138@LB@@LB@@LB@Energy -12.80 kcal/mol@LB@Hybridization Energy -28.6161 kcal/mol@LB@Unfolding Energy - mRNA 5.81197 kcal/mol@LB@Unfolding Energy - sRNA 10.0349 kcal/mol@LB@@LB@Position - mRNA 163 -- 181@LB@Position - sRNA 139 -- 159@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 115 |
0.005604 |
0.1728 |
stm0982 |
himD |
-16.93 |
0.057154 |
154 -- 192 |
37 -- 75 |
integration host factor subunit beta |
|
______________154________193\n______________|__________|\n___________5'-___________GGCUG...UGG-3'\n______________AACAACGCAAU\n______________||||||:|||:\n______________UUGUUGUGUUG\n3'-UUU...UUGUG___________UAGUG...UCA-5'\n_____________|___________|\n_____________76__________36\n |
5 -- 11 |
72 -- 78 |
-12.1177 kcal/mol |
1.51678 kcal/mol |
3.07616 kcal/mol |
154 193@LB@ | |@LB@ 5'- GGCUG...UGG-3'@LB@ AACAACGCAAU@LB@ ||||||:|||:@LB@ UUGUUGUGUUG@LB@3'-UUU...UUGUG UAGUG...UCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -12.1177 kcal/mol@LB@Unfolding Energy - mRNA 1.51678 kcal/mol@LB@Unfolding Energy - sRNA 3.07616 kcal/mol@LB@@LB@Position - mRNA 154 -- 192@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 107 |
0.00529 |
0.1728 |
stm0994 |
mukB |
-11.10 |
0.440174 |
5 -- 20 |
154 -- 167 |
cell division protein MukB |
|
_____________4_________________________21\n_____________|_________________________|\n5'-UGG...UCAGC_______U__________G______AAUAA...CCG-3'\n______________CGGACAG_GG_______A_AGGAAG\n______________|:|||||_||_______|_||||||\n______________GUCUGUC_CC_______U_UCCUUC\n3'-UUU...UACCU__________AUUUACA_G______ACUUU...UCA-5'\n_____________|_________________________|\n_____________168_______________________153\n |
179 -- 185 |
154 -- 160 |
-19.4251 kcal/mol |
3.58038 kcal/mol |
5.99227 kcal/mol |
4 21@LB@ | |@LB@5'-UGG...UCAGC U G AAUAA...CCG-3'@LB@ CGGACAG GG A AGGAAG@LB@ |:||||| || | ||||||@LB@ GUCUGUC CC U UCCUUC@LB@3'-UUU...UACCU AUUUACA G ACUUU...UCA-5'@LB@ | |@LB@ 168 153@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -19.4251 kcal/mol@LB@Unfolding Energy - mRNA 3.58038 kcal/mol@LB@Unfolding Energy - sRNA 5.99227 kcal/mol@LB@@LB@Position - mRNA 5 -- 20@LB@Position - sRNA 154 -- 167@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 135 |
0.006796 |
0.1774 |
stm1044 |
sodC |
-14.39 |
0.147293 |
208 -- 244 |
43 -- 78 |
Gifsy-2 prophage superoxide dismutase precursor (Cu-Zn) |
stm1440 stm0924 |
_____________207__________245\n_____________|____________|\n5'-GAA...GCUUU____________CAGGG...CCA-3'\n______________GGUGGUCUCGCU\n______________|||:||||||||\n______________CCAUCAGAGCGA\n3'-UUU...UUUUC____________UGGCA...UCA-5'\n_____________|____________|\n_____________79___________42\n |
78 -- 84 |
117 -- 123 |
-21.9622 kcal/mol |
4.44224 kcal/mol |
6.55795 kcal/mol |
207 245@LB@ | |@LB@5'-GAA...GCUUU CAGGG...CCA-3'@LB@ GGUGGUCUCGCU@LB@ |||:||||||||@LB@ CCAUCAGAGCGA@LB@3'-UUU...UUUUC UGGCA...UCA-5'@LB@ | |@LB@ 79 42@LB@@LB@@LB@Energy -14.39 kcal/mol@LB@Hybridization Energy -21.9622 kcal/mol@LB@Unfolding Energy - mRNA 4.44224 kcal/mol@LB@Unfolding Energy - sRNA 6.55795 kcal/mol@LB@@LB@Position - mRNA 208 -- 244@LB@Position - sRNA 43 -- 78@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 21 |
0.000482 |
0.08173 |
stm1057 |
pepN |
-18.92 |
0.026522 |
201 -- 244 |
36 -- 81 |
aminopeptidase N |
|
_____________200______________245\n_____________|________________|\n5'-CUU...UUUAU___________C____GCCAA...AAA-3'\n______________GACACAACAGC_ACAA\n______________:||||||||:|_||||\n______________UUGUGUUGUUG_UGUU\n3'-UUU...AACGU________________GUAGU...UCA-5'\n_____________|________________|\n_____________82_______________35\n |
207 -- 213 |
77 -- 83 |
-17.6161 kcal/mol |
1.99149 kcal/mol |
3.56182 kcal/mol |
200 245@LB@ | |@LB@5'-CUU...UUUAU C GCCAA...AAA-3'@LB@ GACACAACAGC ACAA@LB@ :||||||||:| ||||@LB@ UUGUGUUGUUG UGUU@LB@3'-UUU...AACGU GUAGU...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -18.92 kcal/mol@LB@Hybridization Energy -17.6161 kcal/mol@LB@Unfolding Energy - mRNA 1.99149 kcal/mol@LB@Unfolding Energy - sRNA 3.56182 kcal/mol@LB@@LB@Position - mRNA 201 -- 244@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 85 |
0.003998 |
0.1596 |
stm1098 |
hpaC |
-22.15 |
0.007534 |
132 -- 187 |
37 -- 90 |
4-hydroxyphenylacetate 3-monooxygenase reductase component |
|
_____________131________________________________________188\n_____________|__________________________________________|\n5'-UAC...GUUUC___UUU__________G_________AU______GA______GCUGA...GCG-3'\n______________GCA___GCACAAUAAC_ACGACAUCA__CAACUG__UAAGCU\n______________|||___:|||||:|||_||:||||||__||||:|__|||||:\n______________CGU___UGUGUUGUUG_UGUUGUAGU__GUUGGC__AUUCGG\n3'-UUU...GUUAA___U______________________________________UUUUC...UCA-5'\n_____________|__________________________________________|\n_____________91_________________________________________36\n |
151 -- 157 |
68 -- 74 |
-38.4357 kcal/mol |
7.30976 kcal/mol |
11.8287 kcal/mol |
131 188@LB@ | |@LB@5'-UAC...GUUUC UUU G AU GA GCUGA...GCG-3'@LB@ GCA GCACAAUAAC ACGACAUCA CAACUG UAAGCU@LB@ ||| :|||||:||| ||:|||||| ||||:| |||||:@LB@ CGU UGUGUUGUUG UGUUGUAGU GUUGGC AUUCGG@LB@3'-UUU...GUUAA U UUUUC...UCA-5'@LB@ | |@LB@ 91 36@LB@@LB@@LB@Energy -22.15 kcal/mol@LB@Hybridization Energy -38.4357 kcal/mol@LB@Unfolding Energy - mRNA 7.30976 kcal/mol@LB@Unfolding Energy - sRNA 11.8287 kcal/mol@LB@@LB@Position - mRNA 132 -- 187@LB@Position - sRNA 37 -- 90@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 90 |
0.004161 |
0.1596 |
stm1124 |
putA |
-17.89 |
0.039481 |
159 -- 201 |
125 -- 168 |
trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase |
|
_____________158______________________________________________202\n_____________|________________________________________________|\n5'-UAA...CGCUA____U___UUA________A_C____A_____________________UGGGA...UAA-3'\n______________ACUA_UGG___GCAGAUAG_G_GAAU__ACAGG_AGU___AGAGGGUA\n______________||||_|||___:||||:||_|_:|||__|||||_|||___|:||||||\n______________UGAU_ACC___UGUCUGUC_C_UUUA__UGUCC_UCA___UUUCCCAU\n3'-UUU...AUUAG___________________C_A____CA_____U___CUU________CAGAG...UCA-5'\n_____________|________________________________________________|\n_____________169______________________________________________124\n |
195 -- 201 |
125 -- 131 |
-33.9858 kcal/mol |
7.26317 kcal/mol |
8.4265 kcal/mol |
158 202@LB@ | |@LB@5'-UAA...CGCUA U UUA A C A UGGGA...UAA-3'@LB@ ACUA UGG GCAGAUAG G GAAU ACAGG AGU AGAGGGUA@LB@ |||| ||| :||||:|| | :||| ||||| ||| |:||||||@LB@ UGAU ACC UGUCUGUC C UUUA UGUCC UCA UUUCCCAU@LB@3'-UUU...AUUAG C A CA U CUU CAGAG...UCA-5'@LB@ | |@LB@ 169 124@LB@@LB@@LB@Energy -17.89 kcal/mol@LB@Hybridization Energy -33.9858 kcal/mol@LB@Unfolding Energy - mRNA 7.26317 kcal/mol@LB@Unfolding Energy - sRNA 8.4265 kcal/mol@LB@@LB@Position - mRNA 159 -- 201@LB@Position - sRNA 125 -- 168@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 125 -- 131@LB@ |
