| 41 |
0.001426 |
0.1215 |
stm3718 |
rfaI |
-15.09 |
0.114319 |
193 -- 209 |
157 -- 173 |
lipopolysaccharide 1 3-galactosyltransferase |
stm3717 |
_____________192_______________210\n_____________|_________________|\n5'-AUG...AAAAG___________A_____AAAUA...GGA-3'\n______________UGAUCACUAUG_GCAGA\n______________|:|||||||||_:||||\n______________AUUAGUGAUAC_UGUCU\n3'-UUU...AUGUA___________C_____GUCCC...UCA-5'\n_____________|_________________|\n_____________174_______________156\n |
197 -- 203 |
163 -- 169 |
-20.9664 kcal/mol |
2.81615 kcal/mol |
3.98136 kcal/mol |
192 210@LB@ | |@LB@5'-AUG...AAAAG A AAAUA...GGA-3'@LB@ UGAUCACUAUG GCAGA@LB@ |:||||||||| :||||@LB@ AUUAGUGAUAC UGUCU@LB@3'-UUU...AUGUA C GUCCC...UCA-5'@LB@ | |@LB@ 174 156@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -20.9664 kcal/mol@LB@Unfolding Energy - mRNA 2.81615 kcal/mol@LB@Unfolding Energy - sRNA 3.98136 kcal/mol@LB@@LB@Position - mRNA 193 -- 209@LB@Position - sRNA 157 -- 173@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 163 -- 169@LB@ |
| 42 |
0.001433 |
0.1215 |
stm1318 |
katE |
-13.62 |
0.194137 |
191 -- 230 |
43 -- 82 |
catalase HPII |
|
_____________190_________231\n_____________|___________|\n5'-GGC...UCUGC___________UCCCC...AUC-3'\n______________CGUUCCG_CUC\n______________|||||||_|||\n______________GCAAGGC_GAG\n3'-UUU...GAAAA_______C___UCCUUCA-5'\n_____________|___________|\n_____________83__________42\n |
99 -- 105 |
12 -- 18 |
-14.968 kcal/mol |
1.4568 kcal/mol |
6.53351 kcal/mol |
190 231@LB@ | |@LB@5'-GGC...UCUGC UCCCC...AUC-3'@LB@ CGUUCCG CUC@LB@ ||||||| |||@LB@ GCAAGGC GAG@LB@3'-UUU...GAAAA C UCCUUCA-5'@LB@ | |@LB@ 83 42@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -14.968 kcal/mol@LB@Unfolding Energy - mRNA 1.4568 kcal/mol@LB@Unfolding Energy - sRNA 6.53351 kcal/mol@LB@@LB@Position - mRNA 191 -- 230@LB@Position - sRNA 43 -- 82@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 43 |
0.001574 |
0.1267 |
stm4453 |
treC |
-17.28 |
0.050040 |
221 -- 269 |
37 -- 81 |
trehalose- 6-P hydrolase |
|
_____________220____________________270\n_____________|______________________|\n5'-CGU...CGCAC_______AA_____________UAUUC...GCG-3'\n______________UUGCAGG__ACAACAAU__GAC\n______________|||||::__|||||||:__:||\n______________AACGUUU__UGUUGUUG__UUG\n3'-UUU...UGGUU_______G_________UG___UAGUG...UCA-5'\n_____________|______________________|\n_____________82_____________________36\n |
196 -- 202 |
77 -- 83 |
-15.8671 kcal/mol |
3.0955 kcal/mol |
3.80821 kcal/mol |
220 270@LB@ | |@LB@5'-CGU...CGCAC AA UAUUC...GCG-3'@LB@ UUGCAGG ACAACAAU GAC@LB@ |||||:: |||||||: :||@LB@ AACGUUU UGUUGUUG UUG@LB@3'-UUU...UGGUU G UG UAGUG...UCA-5'@LB@ | |@LB@ 82 36@LB@@LB@@LB@Energy -17.28 kcal/mol@LB@Hybridization Energy -15.8671 kcal/mol@LB@Unfolding Energy - mRNA 3.0955 kcal/mol@LB@Unfolding Energy - sRNA 3.80821 kcal/mol@LB@@LB@Position - mRNA 221 -- 269@LB@Position - sRNA 37 -- 81@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 44 |
0.001631 |
0.1267 |
stm1318 |
katE |
-13.62 |
0.194137 |
191 -- 230 |
43 -- 82 |
catalase HPII |
|
_____________190_________231\n_____________|___________|\n5'-GGC...UCUGC___________UCCCC...AUC-3'\n______________CGUUCCG_CUC\n______________|||||||_|||\n______________GCAAGGC_GAG\n3'-UUU...GAAAA_______C___UCCUUCA-5'\n_____________|___________|\n_____________83__________42\n |
99 -- 105 |
12 -- 18 |
-14.968 kcal/mol |
1.4568 kcal/mol |
6.53351 kcal/mol |
190 231@LB@ | |@LB@5'-GGC...UCUGC UCCCC...AUC-3'@LB@ CGUUCCG CUC@LB@ ||||||| |||@LB@ GCAAGGC GAG@LB@3'-UUU...GAAAA C UCCUUCA-5'@LB@ | |@LB@ 83 42@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -14.968 kcal/mol@LB@Unfolding Energy - mRNA 1.4568 kcal/mol@LB@Unfolding Energy - sRNA 6.53351 kcal/mol@LB@@LB@Position - mRNA 191 -- 230@LB@Position - sRNA 43 -- 82@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 45 |
0.001635 |
0.1267 |
stm2351 |
hisP |
-13.82 |
0.180688 |
258 -- 282 |
115 -- 140 |
histidine and lysine/arginine/ornithine transport protein |
|
_____________257__________________________283\n_____________|____________________________|\n5'-UAC...GUCAU______CU____________________AGGCC...AUG-3'\n______________GAAGUG__GAAAGGGGUA___UCGCUGC\n______________||||||__:|||:|||||___|||||:|\n______________CUUCAC__UUUUUCCCAU___AGCGAUG\n3'-UUU...AUGUC__________________CAG_______GCACC...UCA-5'\n_____________|____________________________|\n_____________141__________________________114\n |
276 -- 282 |
115 -- 121 |
-29.6028 kcal/mol |
6.54228 kcal/mol |
8.52785 kcal/mol |
257 283@LB@ | |@LB@5'-UAC...GUCAU CU AGGCC...AUG-3'@LB@ GAAGUG GAAAGGGGUA UCGCUGC@LB@ |||||| :|||:||||| |||||:|@LB@ CUUCAC UUUUUCCCAU AGCGAUG@LB@3'-UUU...AUGUC CAG GCACC...UCA-5'@LB@ | |@LB@ 141 114@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -29.6028 kcal/mol@LB@Unfolding Energy - mRNA 6.54228 kcal/mol@LB@Unfolding Energy - sRNA 8.52785 kcal/mol@LB@@LB@Position - mRNA 258 -- 282@LB@Position - sRNA 115 -- 140@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 115 -- 121@LB@ |
| 46 |
0.001637 |
0.1267 |
stm2313 |
elaC |
-17.21 |
0.051329 |
250 -- 300 |
51 -- 90 |
ribonuclease Z |
stm1109 |
_____________249_____________________________________________301\n_____________|_______________________________________________|\n5'-UCG...CUCAC____UGUA________UUUAUUACAUCU________CAAC_______GGAG-3'\n______________GCAA____ACGGCAAU____________GCAACAUC____GCAGCCG\n______________||||____||::|||:____________:|||||||____:||:|||\n______________CGUU____UGUUGUUG____________UGUUGUAG____UGUUGGC\n3'-UUU...GUUAA____UG_________________________________________AUUCG...UCA-5'\n_____________|_______________________________________________|\n_____________91______________________________________________50\n |
290 -- 296 |
62 -- 68 |
-28.5454 kcal/mol |
7.10881 kcal/mol |
8.62576 kcal/mol |
249 301@LB@ | |@LB@5'-UCG...CUCAC UGUA UUUAUUACAUCU CAAC GGAG-3'@LB@ GCAA ACGGCAAU GCAACAUC GCAGCCG@LB@ |||| ||::|||: :||||||| :||:|||@LB@ CGUU UGUUGUUG UGUUGUAG UGUUGGC@LB@3'-UUU...GUUAA UG AUUCG...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -17.21 kcal/mol@LB@Hybridization Energy -28.5454 kcal/mol@LB@Unfolding Energy - mRNA 7.10881 kcal/mol@LB@Unfolding Energy - sRNA 8.62576 kcal/mol@LB@@LB@Position - mRNA 250 -- 300@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 47 |
0.001676 |
0.127 |
stm0637 |
dacA |
-17.91 |
0.039191 |
14 -- 64 |
37 -- 92 |
serine-type D-Ala-D-Ala carboxypeptidase |
|
_____________13____________________65\n_____________|_____________________|\n5'-GUU...AACGU_________GA__________UACAG...AUA-3'\n______________UUGCAAACA____AGCACAAU\n______________|||||||||____|:|||||:\n______________AACGUUUGU____UUGUGUUG\n3'-UUU...UGGUU_________GUUG________UAGUG...UCA-5'\n_____________|_____________________|\n_____________93____________________36\n |
26 -- 32 |
72 -- 78 |
-19.7119 kcal/mol |
3.03223 kcal/mol |
3.80821 kcal/mol |
13 65@LB@ | |@LB@5'-GUU...AACGU GA UACAG...AUA-3'@LB@ UUGCAAACA AGCACAAU@LB@ ||||||||| |:|||||:@LB@ AACGUUUGU UUGUGUUG@LB@3'-UUU...UGGUU GUUG UAGUG...UCA-5'@LB@ | |@LB@ 93 36@LB@@LB@@LB@Energy -17.91 kcal/mol@LB@Hybridization Energy -19.7119 kcal/mol@LB@Unfolding Energy - mRNA 3.03223 kcal/mol@LB@Unfolding Energy - sRNA 3.80821 kcal/mol@LB@@LB@Position - mRNA 14 -- 64@LB@Position - sRNA 37 -- 92@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 48 |
0.001762 |
0.1291 |
stm4523 |
yjiW |
-20.55 |
0.014078 |
157 -- 299 |
40 -- 186 |
endoribonuclease SymE |
|
_____________156____________________________________________________________________________________________300\n_____________|______________________________________________________________________________________________|\n5'-GUG...AUUUU____AA___CCA__A__A_______CCAUUCU__________CG______UC__GAAGUCUCCC___________C______CUU_________UAUGC...AUU-3'\n______________AGGG__UAG___UC_UG_CUACCGU_______AUUGCAGAUC___UGCGA__CA__________CAACAA_AUAA_CGUCAC___ACCGUGAGU\n______________||||__|||___||_:|_|||||||_______||:|||||:|___|||:|__||__________||||||_|:||_|:||||___|||||:||:\n______________UCCC__AUC___AG_GC_GAUGGCA_______UAGCGUCUGG___ACGUU__GU__________GUUGUU_UGUU_GUAGUG___UGGCAUUCG\n3'-UUU...CUUUU______________A__________CCAGACU__________UUA_____U___________________G___________U___________GUUUU...UCA-5'\n_____________|______________________________________________________________________________________________|\n_____________187____________________________________________________________________________________________39\n |
222 -- 228 |
95 -- 101 |
-59.8396 kcal/mol |
18.2388 kcal/mol |
27.0823 kcal/mol |
156 300@LB@ | |@LB@5'-GUG...AUUUU AA CCA A A CCAUUCU CG UC GAAGUCUCCC C CUU UAUGC...AUU-3'@LB@ AGGG UAG UC UG CUACCGU AUUGCAGAUC UGCGA CA CAACAA AUAA CGUCAC ACCGUGAGU@LB@ |||| ||| || :| ||||||| ||:|||||:| |||:| || |||||| |:|| |:|||| |||||:||:@LB@ UCCC AUC AG GC GAUGGCA UAGCGUCUGG ACGUU GU GUUGUU UGUU GUAGUG UGGCAUUCG@LB@3'-UUU...CUUUU A CCAGACU UUA U G U GUUUU...UCA-5'@LB@ | |@LB@ 187 39@LB@@LB@@LB@Energy -20.55 kcal/mol@LB@Hybridization Energy -59.8396 kcal/mol@LB@Unfolding Energy - mRNA 18.2388 kcal/mol@LB@Unfolding Energy - sRNA 27.0823 kcal/mol@LB@@LB@Position - mRNA 157 -- 299@LB@Position - sRNA 40 -- 186@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 49 |
0.001802 |
0.1291 |
stm1787 |
N/A |
-18.29 |
0.033902 |
137 -- 202 |
34 -- 90 |
[Ni/Fe] hydrogenase large subunit |
|
_____________136__________________203\n_____________|____________________|\n5'-GGC...CCAAC________C___________GUUAG...GCG-3'\n______________GUAAACGC_ACAA_ACAACA\n______________|:||||:|_||||_||||||\n______________CGUUUGUG_UGUU_UGUUGU\n3'-UUU...GUUAA________U____G______AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________33\n |
138 -- 144 |
83 -- 89 |
-18.7581 kcal/mol |
1.39906 kcal/mol |
3.80671 kcal/mol |
136 203@LB@ | |@LB@5'-GGC...CCAAC C GUUAG...GCG-3'@LB@ GUAAACGC ACAA ACAACA@LB@ |:||||:| |||| ||||||@LB@ CGUUUGUG UGUU UGUUGU@LB@3'-UUU...GUUAA U G AGUGU...UCA-5'@LB@ | |@LB@ 91 33@LB@@LB@@LB@Energy -18.29 kcal/mol@LB@Hybridization Energy -18.7581 kcal/mol@LB@Unfolding Energy - mRNA 1.39906 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 137 -- 202@LB@Position - sRNA 34 -- 90@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 50 |
0.001812 |
0.1291 |
stm3207 |
ygiH |
-15.41 |
0.101358 |
70 -- 101 |
63 -- 93 |
acyl-phosphate--glycerol-3-phosphate O-acyltransferase |
|
_____________69___________________________________102\n_____________|____________________________________|\n5'-UAU...CGAAA_____UCUAU__________U_______________UGCCU...CGC-3'\n______________GUUGC_____AAAUACAAUA_C____CAUCACGACC\n______________:||||_____|||:||||:|_|____||||||:|||\n______________UAACG_____UUUGUGUUGU_G____GUAGUGUUGG\n3'-UUU...CUGGU____________________U_UGUU__________CAUUC...UCA-5'\n_____________|____________________________________|\n_____________94___________________________________62\n |
95 -- 101 |
63 -- 69 |
-25.69 kcal/mol |
1.94006 kcal/mol |
8.62086 kcal/mol |
69 102@LB@ | |@LB@5'-UAU...CGAAA UCUAU U UGCCU...CGC-3'@LB@ GUUGC AAAUACAAUA C CAUCACGACC@LB@ :|||| |||:||||:| | ||||||:|||@LB@ UAACG UUUGUGUUGU G GUAGUGUUGG@LB@3'-UUU...CUGGU U UGUU CAUUC...UCA-5'@LB@ | |@LB@ 94 62@LB@@LB@@LB@Energy -15.41 kcal/mol@LB@Hybridization Energy -25.69 kcal/mol@LB@Unfolding Energy - mRNA 1.94006 kcal/mol@LB@Unfolding Energy - sRNA 8.62086 kcal/mol@LB@@LB@Position - mRNA 70 -- 101@LB@Position - sRNA 63 -- 93@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 63 -- 69@LB@ |
