10 |
0.0001468 |
0.05229 |
stm0680 |
asnB |
-17.15 |
0.052408 |
158 -- 224 |
32 -- 90 |
asparagine synthetase B |
|
_____________157________________________225\n_____________|__________________________|\n5'-CAU...GUCAA_________AAAAGU___________GAUUA...CGG-3'\n______________GCAAAUACA______ACGACGCAACA\n______________|||||:|||______||:||:|||||\n______________CGUUUGUGU______UGUUGUGUUGU\n3'-UUU...GUUAA__________________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________31\n |
177 -- 183 |
71 -- 77 |
-23.872 kcal/mol |
3.8402 kcal/mol |
3.80671 kcal/mol |
157 225@LB@ | |@LB@5'-CAU...GUCAA AAAAGU GAUUA...CGG-3'@LB@ GCAAAUACA ACGACGCAACA@LB@ |||||:||| ||:||:|||||@LB@ CGUUUGUGU UGUUGUGUUGU@LB@3'-UUU...GUUAA AGUGU...UCA-5'@LB@ | |@LB@ 91 31@LB@@LB@@LB@Energy -17.15 kcal/mol@LB@Hybridization Energy -23.872 kcal/mol@LB@Unfolding Energy - mRNA 3.8402 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 158 -- 224@LB@Position - sRNA 32 -- 90@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 71 -- 77@LB@ |
11 |
0.0001804 |
0.05681 |
stm0959 |
lrp |
-12.80 |
0.257711 |
163 -- 181 |
139 -- 159 |
leucine-responsive transcriptional regulator |
|
_____________162_______________________________________________182\n_____________|_________________________________________________|\n5'-UGA...AGAGU________A_____GA________UAC______ACAAUAAUAAU_____AUAGC...AGC-3'\n______________CAGGCAGG_GUAGG_____AGGAA___AGAGAG___________GGUAG\n______________|||:||||_|||::_____|||||___|:|:||___________|||||\n______________GUCUGUCC_CAUUU_____UCCUU___UUUUUC___________CCAUC\n3'-UUU...UACCU______________ACAUG_____CAC______________________AGAGC...UCA-5'\n_____________|_________________________________________________|\n_____________160_______________________________________________138\n |
163 -- 169 |
153 -- 159 |
-28.6161 kcal/mol |
5.81197 kcal/mol |
10.0349 kcal/mol |
162 182@LB@ | |@LB@5'-UGA...AGAGU A GA UAC ACAAUAAUAAU AUAGC...AGC-3'@LB@ CAGGCAGG GUAGG AGGAA AGAGAG GGUAG@LB@ |||:|||| |||:: ||||| |:|:|| |||||@LB@ GUCUGUCC CAUUU UCCUU UUUUUC CCAUC@LB@3'-UUU...UACCU ACAUG CAC AGAGC...UCA-5'@LB@ | |@LB@ 160 138@LB@@LB@@LB@Energy -12.80 kcal/mol@LB@Hybridization Energy -28.6161 kcal/mol@LB@Unfolding Energy - mRNA 5.81197 kcal/mol@LB@Unfolding Energy - sRNA 10.0349 kcal/mol@LB@@LB@Position - mRNA 163 -- 181@LB@Position - sRNA 139 -- 159@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 153 -- 159@LB@ |
12 |
0.0002098 |
0.05681 |
stm3344 |
rpsI |
-21.57 |
0.009451 |
131 -- 172 |
57 -- 102 |
30S ribosomal protein S9 |
|
_____________130__________________________173\n_____________|____________________________|\n5'-GUG...GGCAA__________C________CA_______CAAGU...GUU-3'\n______________CGAGCACAAC_ACGCGGCA__GCAACCG\n______________|:|:||||||_||:|::||__:||||||\n______________GUUUGUGUUG_UGUGUUGU__UGUUGGC\n3'-UUU...UUAAC__________U________AG_______AUUCG...UCA-5'\n_____________|____________________________|\n_____________103__________________________56\n |
161 -- 167 |
62 -- 68 |
-36.1701 kcal/mol |
9.00411 kcal/mol |
8.61223 kcal/mol |
130 173@LB@ | |@LB@5'-GUG...GGCAA C CA CAAGU...GUU-3'@LB@ CGAGCACAAC ACGCGGCA GCAACCG@LB@ |:|:|||||| ||:|::|| :||||||@LB@ GUUUGUGUUG UGUGUUGU UGUUGGC@LB@3'-UUU...UUAAC U AG AUUCG...UCA-5'@LB@ | |@LB@ 103 56@LB@@LB@@LB@Energy -21.57 kcal/mol@LB@Hybridization Energy -36.1701 kcal/mol@LB@Unfolding Energy - mRNA 9.00411 kcal/mol@LB@Unfolding Energy - sRNA 8.61223 kcal/mol@LB@@LB@Position - mRNA 131 -- 172@LB@Position - sRNA 57 -- 102@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 62 -- 68@LB@ |
13 |
0.0002148 |
0.05681 |
stm4275 |
acs |
-17.09 |
0.053801 |
176 -- 229 |
31 -- 87 |
acetate--CoA ligase |
|
_____________175___________________230\n_____________|_____________________|\n5'-UUA...UGAGC________UA______C____CCCGC...ACG-3'\n______________CAAACACA__AACACG_CAUU\n______________||||||||__|||||:_|||:\n______________GUUUGUGU__UUGUGU_GUAG\n3'-UUU...UUAAC________UG______U____UGUUG...UCA-5'\n_____________|_____________________|\n_____________88____________________30\n |
208 -- 214 |
82 -- 88 |
-19.539 kcal/mol |
0.409404 kcal/mol |
4.32311 kcal/mol |
175 230@LB@ | |@LB@5'-UUA...UGAGC UA C CCCGC...ACG-3'@LB@ CAAACACA AACACG CAUU@LB@ |||||||| |||||: |||:@LB@ GUUUGUGU UUGUGU GUAG@LB@3'-UUU...UUAAC UG U UGUUG...UCA-5'@LB@ | |@LB@ 88 30@LB@@LB@@LB@Energy -17.09 kcal/mol@LB@Hybridization Energy -19.539 kcal/mol@LB@Unfolding Energy - mRNA 0.409404 kcal/mol@LB@Unfolding Energy - sRNA 4.32311 kcal/mol@LB@@LB@Position - mRNA 176 -- 229@LB@Position - sRNA 31 -- 87@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 82 -- 88@LB@ |
14 |
0.0002233 |
0.05681 |
stm3843 |
trmE |
-16.53 |
0.066478 |
207 -- 249 |
37 -- 85 |
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE |
|
_____________206______________250\n_____________|________________|\n5'-UGA...CAUGA________________UAUCG...CGC-3'\n______________GC___CAUAACGACAC\n______________||___||:|||:||||\n______________CG___GUGUUGUUGUG\n3'-UUU...GUUAA__UUU___________UUGUA...UCA-5'\n_____________|________________|\n_____________86_______________36\n |
211 -- 217 |
75 -- 81 |
-15.3625 kcal/mol |
2.22645 kcal/mol |
3.72363 kcal/mol |
206 250@LB@ | |@LB@5'-UGA...CAUGA UAUCG...CGC-3'@LB@ GC CAUAACGACAC@LB@ || ||:|||:||||@LB@ CG GUGUUGUUGUG@LB@3'-UUU...GUUAA UUU UUGUA...UCA-5'@LB@ | |@LB@ 86 36@LB@@LB@@LB@Energy -16.53 kcal/mol@LB@Hybridization Energy -15.3625 kcal/mol@LB@Unfolding Energy - mRNA 2.22645 kcal/mol@LB@Unfolding Energy - sRNA 3.72363 kcal/mol@LB@@LB@Position - mRNA 207 -- 249@LB@Position - sRNA 37 -- 85@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 75 -- 81@LB@ |
15 |
0.000269 |
0.06194 |
stm3630 |
dppA |
-21.81 |
0.008578 |
158 -- 199 |
51 -- 92 |
ABC transporter substrate-binding protein |
|
_____________157_____________________________________200\n_____________|_______________________________________|\n5'-AUU...AGCCU______AGG___A__________________________AGAAG...AUU-3'\n______________UUGCAA___GCA_AACAACAU_ACAUCACAAUUG_GAGC\n______________||||||___:||_|||||||:_|||||||||::|_:|||\n______________AACGUU___UGU_UUGUUGUG_UGUAGUGUUGGC_UUCG\n3'-UUU...UGGUU____________G________U____________A____GUUUU...UCA-5'\n_____________|_______________________________________|\n_____________93______________________________________50\n |
183 -- 189 |
63 -- 69 |
-36.2763 kcal/mol |
6.81868 kcal/mol |
11.5217 kcal/mol |
157 200@LB@ | |@LB@5'-AUU...AGCCU AGG A AGAAG...AUU-3'@LB@ UUGCAA GCA AACAACAU ACAUCACAAUUG GAGC@LB@ |||||| :|| |||||||: |||||||||::| :|||@LB@ AACGUU UGU UUGUUGUG UGUAGUGUUGGC UUCG@LB@3'-UUU...UGGUU G U A GUUUU...UCA-5'@LB@ | |@LB@ 93 50@LB@@LB@@LB@Energy -21.81 kcal/mol@LB@Hybridization Energy -36.2763 kcal/mol@LB@Unfolding Energy - mRNA 6.81868 kcal/mol@LB@Unfolding Energy - sRNA 11.5217 kcal/mol@LB@@LB@Position - mRNA 158 -- 199@LB@Position - sRNA 51 -- 92@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 63 -- 69@LB@ |
16 |
0.0002876 |
0.06194 |
stm1378 |
pykF |
-16.63 |
0.064116 |
5 -- 66 |
31 -- 91 |
pyruvate kinase |
|
_____________4____________________________________________________________________67\n_____________|____________________________________________________________________|\n_______5'-GGAC___A____U_______UA__AU____CCCUUC___U__________C______________A______UCUGC...UGA-3'\n______________UGU_AAAC_CAACGAC__AA__UAUC______CCG_UGGGCUGAAA_GC______GAGCAC_CAUUCC\n______________||:_||||_||||:||__||__:|||______|||_|::||::|||_||______||:|||_||||||\n______________ACG_UUUG_GUUGUUG__UU__GUAG______GGC_AUUCGGUUUU_CG______CUUGUG_GUAAGG\n3'-UUU...GGUUA________U_______UG________UGUU___________________GGUAGU______C______CUAUU...UCA-5'\n_____________|____________________________________________________________________|\n_____________92___________________________________________________________________30\n |
14 -- 20 |
77 -- 83 |
-44.7981 kcal/mol |
9.74365 kcal/mol |
24.1415 kcal/mol |
4 67@LB@ | |@LB@ 5'-GGAC A U UA AU CCCUUC U C A UCUGC...UGA-3'@LB@ UGU AAAC CAACGAC AA UAUC CCG UGGGCUGAAA GC GAGCAC CAUUCC@LB@ ||: |||| ||||:|| || :||| ||| |::||::||| || ||:||| ||||||@LB@ ACG UUUG GUUGUUG UU GUAG GGC AUUCGGUUUU CG CUUGUG GUAAGG@LB@3'-UUU...GGUUA U UG UGUU GGUAGU C CUAUU...UCA-5'@LB@ | |@LB@ 92 30@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -44.7981 kcal/mol@LB@Unfolding Energy - mRNA 9.74365 kcal/mol@LB@Unfolding Energy - sRNA 24.1415 kcal/mol@LB@@LB@Position - mRNA 5 -- 66@LB@Position - sRNA 31 -- 91@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 77 -- 83@LB@ |
17 |
0.0003055 |
0.06194 |
stm2694 |
N/A |
-22.95 |
0.005498 |
261 -- 295 |
52 -- 90 |
Fels-2 prophage protein |
|
_____________260_____________________________________296\n_____________|_______________________________________|\n5'-ACG...UAUCA_____________A_G____________AGU________UAUAA-3'\n______________GC___UACGACAA_A_AACGUUACAACC____GCCAAAA\n______________||___:||:||||_|_|||:|:||||||____|||||||\n______________CG___GUGUUGUU_U_UUGUAGUGUUGG____CGGUUUU\n3'-UUU...GUUAA__UUU________G_G____________CAUU_______CGGGU...UCA-5'\n_____________|_______________________________________|\n_____________91______________________________________51\n |
289 -- 295 |
52 -- 58 |
-35.4487 kcal/mol |
2.51857 kcal/mol |
14.0353 kcal/mol |
260 296@LB@ | |@LB@5'-ACG...UAUCA A G AGU UAUAA-3'@LB@ GC UACGACAA A AACGUUACAACC GCCAAAA@LB@ || :||:|||| | |||:|:|||||| |||||||@LB@ CG GUGUUGUU U UUGUAGUGUUGG CGGUUUU@LB@3'-UUU...GUUAA UUU G G CAUU CGGGU...UCA-5'@LB@ | |@LB@ 91 51@LB@@LB@@LB@Energy -22.95 kcal/mol@LB@Hybridization Energy -35.4487 kcal/mol@LB@Unfolding Energy - mRNA 2.51857 kcal/mol@LB@Unfolding Energy - sRNA 14.0353 kcal/mol@LB@@LB@Position - mRNA 261 -- 295@LB@Position - sRNA 52 -- 90@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 52 -- 58@LB@ |
18 |
0.0003131 |
0.06194 |
stm0112 |
leuB |
-16.29 |
0.072835 |
153 -- 217 |
44 -- 93 |
3-isopropylmalate dehydrogenase |
|
_____________152___________218\n_____________|_____________|\n5'-AAA...AAAGA_____________AGCUC...GUU-3'\n______________AUUGC_AACGCAA\n______________|||||_|||:|||\n______________UAACG_UUGUGUU\n3'-UUU...CUGGU_____U_______GUUGU...UCA-5'\n_____________|_____________|\n_____________94____________43\n |
158 -- 164 |
81 -- 87 |
-11.6192 kcal/mol |
1.90811 kcal/mol |
3.57619 kcal/mol |
152 218@LB@ | |@LB@5'-AAA...AAAGA AGCUC...GUU-3'@LB@ AUUGC AACGCAA@LB@ ||||| |||:|||@LB@ UAACG UUGUGUU@LB@3'-UUU...CUGGU U GUUGU...UCA-5'@LB@ | |@LB@ 94 43@LB@@LB@@LB@Energy -16.29 kcal/mol@LB@Hybridization Energy -11.6192 kcal/mol@LB@Unfolding Energy - mRNA 1.90811 kcal/mol@LB@Unfolding Energy - sRNA 3.57619 kcal/mol@LB@@LB@Position - mRNA 153 -- 217@LB@Position - sRNA 44 -- 93@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 81 -- 87@LB@ |
19 |
0.0004167 |
0.0781 |
stm0475 |
acrB |
-19.12 |
0.024591 |
69 -- 114 |
139 -- 185 |
aminoglycoside/multidrug transporter permease |
|
_____________68_______________________115\n_____________|________________________|\n5'-AAG...GUCCU____C_____U_____________AAUUA...CGC-3'\n______________GGCG_ACAGG_UAAA_GUACAGGA\n______________|:|:_|||||_||||_||||||||\n______________CUGU_UGUCC_AUUU_CAUGUCCU\n3'-UUU...GAUAC____C_____C____A________UCACU...UCA-5'\n_____________|________________________|\n_____________186______________________138\n |
108 -- 114 |
139 -- 145 |
-25.274 kcal/mol |
6.90525 kcal/mol |
3.69132 kcal/mol |
68 115@LB@ | |@LB@5'-AAG...GUCCU C U AAUUA...CGC-3'@LB@ GGCG ACAGG UAAA GUACAGGA@LB@ |:|: ||||| |||| ||||||||@LB@ CUGU UGUCC AUUU CAUGUCCU@LB@3'-UUU...GAUAC C C A UCACU...UCA-5'@LB@ | |@LB@ 186 138@LB@@LB@@LB@Energy -19.12 kcal/mol@LB@Hybridization Energy -25.274 kcal/mol@LB@Unfolding Energy - mRNA 6.90525 kcal/mol@LB@Unfolding Energy - sRNA 3.69132 kcal/mol@LB@@LB@Position - mRNA 69 -- 114@LB@Position - sRNA 139 -- 185@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 139 -- 145@LB@ |