131 |
0.006551 |
0.1774 |
stm3217 |
aer |
-17.88 |
0.039631 |
254 -- 298 |
36 -- 77 |
senses cellular redox state or proton motive force; similar to E. coli aerotaxis sensor receptor flavoprotein (AAC76107.1); Blastp hit to AAC76107.1 (506 aa) 83% identity in aa 1 - 506 |
|
_____________253____________________________________________________________________________________299\n_____________|______________________________________________________________________________________|\n5'-UUU...AAGGC______UGA_____________________ACAAA____AA__AUU____________________UC__G______UUUA_____UAAAG...CCA-3'\n______________GCAGGA___GGUGAAAA_________UCGU_____UAUU__GG____AAUCGCA____AAUUGCGA__CA_AGCAAU____ACAAC\n______________:|||||___:|||||||_________|||:_____||::__||____|||||||____||||||:|__||_|:|||:____|||||\n______________UGUCCU___UCACUUUU_________AGCG_____AUGG__CC____UUAGCGU____UUAACGUU__GU_UUGUUG____UGUUG\n3'-UUU...UUACA_________________UCCCAUCAG_____________CA__AGAC_______CUGG________U___G_______________UAGUG...UCA-5'\n_____________|______________________________________________________________________________________|\n_____________78_____________________________________________________________________________________35\n |
89 -- 95 |
99 -- 105 |
-43.6348 kcal/mol |
13.4466 kcal/mol |
20.9633 kcal/mol |
253 299@LB@ | |@LB@5'-UUU...AAGGC UGA ACAAA AA AUU UC G UUUA UAAAG...CCA-3'@LB@ GCAGGA GGUGAAAA UCGU UAUU GG AAUCGCA AAUUGCGA CA AGCAAU ACAAC@LB@ :||||| :||||||| |||: ||:: || ||||||| ||||||:| || |:|||: |||||@LB@ UGUCCU UCACUUUU AGCG AUGG CC UUAGCGU UUAACGUU GU UUGUUG UGUUG@LB@3'-UUU...UUACA UCCCAUCAG CA AGAC CUGG U G UAGUG...UCA-5'@LB@ | |@LB@ 78 35@LB@@LB@@LB@Energy -17.88 kcal/mol@LB@Hybridization Energy -43.6348 kcal/mol@LB@Unfolding Energy - mRNA 13.4466 kcal/mol@LB@Unfolding Energy - sRNA 20.9633 kcal/mol@LB@@LB@Position - mRNA 254 -- 298@LB@Position - sRNA 36 -- 77@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 99 -- 105@LB@ |
161 |
0.008343 |
0.1845 |
stm3321 |
yhbH |
-14.15 |
0.160801 |
194 -- 246 |
48 -- 88 |
ribosomal subunit interface protein |
|
_____________193______________________247\n_____________|________________________|\n5'-GAU...AAGGA______UAU_____U_________CGGAC...GGA-3'\n______________AGACAC___GCAGC_CAAUAUCAC\n______________|:||||___:||:|_|||:|||||\n______________UUUGUG___UGUUG_GUUGUAGUG\n3'-UUU...UAACG______U_______U_________UUGGC...UCA-5'\n_____________|________________________|\n_____________89_______________________47\n |
211 -- 217 |
67 -- 73 |
-22.4132 kcal/mol |
2.65406 kcal/mol |
5.48747 kcal/mol |
193 247@LB@ | |@LB@5'-GAU...AAGGA UAU U CGGAC...GGA-3'@LB@ AGACAC GCAGC CAAUAUCAC@LB@ |:|||| :||:| |||:|||||@LB@ UUUGUG UGUUG GUUGUAGUG@LB@3'-UUU...UAACG U U UUGGC...UCA-5'@LB@ | |@LB@ 89 47@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -22.4132 kcal/mol@LB@Unfolding Energy - mRNA 2.65406 kcal/mol@LB@Unfolding Energy - sRNA 5.48747 kcal/mol@LB@@LB@Position - mRNA 194 -- 246@LB@Position - sRNA 48 -- 88@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 67 -- 73@LB@ |
12 |
0.0002098 |
0.05681 |
stm3344 |
rpsI |
-21.57 |
0.009451 |
131 -- 172 |
57 -- 102 |
30S ribosomal protein S9 |
|
_____________130__________________________173\n_____________|____________________________|\n5'-GUG...GGCAA__________C________CA_______CAAGU...GUU-3'\n______________CGAGCACAAC_ACGCGGCA__GCAACCG\n______________|:|:||||||_||:|::||__:||||||\n______________GUUUGUGUUG_UGUGUUGU__UGUUGGC\n3'-UUU...UUAAC__________U________AG_______AUUCG...UCA-5'\n_____________|____________________________|\n_____________103__________________________56\n |
161 -- 167 |
62 -- 68 |
-36.1701 kcal/mol |
9.00411 kcal/mol |
8.61223 kcal/mol |
130 173@LB@ | |@LB@5'-GUG...GGCAA C CA CAAGU...GUU-3'@LB@ CGAGCACAAC ACGCGGCA GCAACCG@LB@ |:|:|||||| ||:|::|| :||||||@LB@ GUUUGUGUUG UGUGUUGU UGUUGGC@LB@3'-UUU...UUAAC U AG AUUCG...UCA-5'@LB@ | |@LB@ 103 56@LB@@LB@@LB@Energy -21.57 kcal/mol@LB@Hybridization Energy -36.1701 kcal/mol@LB@Unfolding Energy - mRNA 9.00411 kcal/mol@LB@Unfolding Energy - sRNA 8.61223 kcal/mol@LB@@LB@Position - mRNA 131 -- 172@LB@Position - sRNA 57 -- 102@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 62 -- 68@LB@ |
199 |
0.01101 |
0.197 |
stm3346 |
yhcM |
-12.83 |
0.254909 |
186 -- 228 |
33 -- 82 |
cell division protein ZapE |
|
_____________185____________________229\n_____________|______________________|\n5'-CAG...UUCAA_G__UA__________UAU___AAGCC...AAA-3'\n______________G_AA__ACAAUAACAU___GCA\n______________|_||__||||:||||:___:||\n______________C_UU__UGUUGUUGUG___UGU\n3'-UUU...GUUAA_G__UG__________U_____AGUGU...UCA-5'\n_____________|______________________|\n_____________83_____________________32\n |
193 -- 199 |
75 -- 81 |
-14.0954 kcal/mol |
2.45302 kcal/mol |
3.80671 kcal/mol |
185 229@LB@ | |@LB@5'-CAG...UUCAA G UA UAU AAGCC...AAA-3'@LB@ G AA ACAAUAACAU GCA@LB@ | || ||||:||||: :||@LB@ C UU UGUUGUUGUG UGU@LB@3'-UUU...GUUAA G UG U AGUGU...UCA-5'@LB@ | |@LB@ 83 32@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -14.0954 kcal/mol@LB@Unfolding Energy - mRNA 2.45302 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 186 -- 228@LB@Position - sRNA 33 -- 82@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 75 -- 81@LB@ |
172 |
0.009395 |
0.1945 |
stm3373 |
mreC |
-15.91 |
0.084075 |
179 -- 229 |
45 -- 87 |
rod shape-determining protein MreC |
|
_____________178____________230\n_____________|______________|\n5'-UGA...UGUUA_____AG_______CAUUC...GGA-3'\n______________AUGGA__AGACGGG\n______________|||||__||||:||\n______________UACCU__UCUGUCC\n3'-UUU...AGUGA_____G________CAUUU...UCA-5'\n_____________|______________|\n_____________88_____________44\n |
21 -- 27 |
153 -- 159 |
-16.2478 kcal/mol |
4.60826 kcal/mol |
2.82582 kcal/mol |
178 230@LB@ | |@LB@5'-UGA...UGUUA AG CAUUC...GGA-3'@LB@ AUGGA AGACGGG@LB@ ||||| ||||:||@LB@ UACCU UCUGUCC@LB@3'-UUU...AGUGA G CAUUU...UCA-5'@LB@ | |@LB@ 88 44@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -16.2478 kcal/mol@LB@Unfolding Energy - mRNA 4.60826 kcal/mol@LB@Unfolding Energy - sRNA 2.82582 kcal/mol@LB@@LB@Position - mRNA 179 -- 229@LB@Position - sRNA 45 -- 87@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 153 -- 159@LB@ |
176 |
0.009613 |
0.1945 |
stm3378 |
N/A |
-14.56 |
0.138793 |
155 -- 243 |
45 -- 125 |
sulfoxide reductase heme-binding subunit YedZ |
|
_____________154_______________________________________________________________________________________244\n_____________|_________________________________________________________________________________________|\n5'-UGU...AAUGA____GCU_____GU____C_____CAAU_______AGAAUUU____G____U___________A____G_______U____________UUGUC...GUG-3'\n______________AGUC___UCGCU__AUCG_GGUCU____UUGCGGG_______UUAA_UGCG__C_UGACAGCA_AACA__AUAACC___GGCUAAAAGU\n______________||||___|||||__|:||_|||||____|:||:|:_______::||_|||:__|_::|||:||_||||__|:||||___:||:|||||:\n______________UCAG___AGCGA__UGGC_CCAGA____AGCGUCU_______GGUU_ACGU__G_GUUGUUGU_UUGU__UGUUGG___UCGGUUUUCG\n3'-UUU...UCCCA__________________A_____CUU___________________A____UU_U________G____AG______CAU__________GGUAG...UCA-5'\n_____________|_________________________________________________________________________________________|\n_____________126_______________________________________________________________________________________44\n |
209 -- 215 |
76 -- 82 |
-59.1156 kcal/mol |
19.0244 kcal/mol |
31.7466 kcal/mol |
154 244@LB@ | |@LB@5'-UGU...AAUGA GCU GU C CAAU AGAAUUU G U A G U UUGUC...GUG-3'@LB@ AGUC UCGCU AUCG GGUCU UUGCGGG UUAA UGCG C UGACAGCA AACA AUAACC GGCUAAAAGU@LB@ |||| ||||| |:|| ||||| |:||:|: ::|| |||: | ::|||:|| |||| |:|||| :||:|||||:@LB@ UCAG AGCGA UGGC CCAGA AGCGUCU GGUU ACGU G GUUGUUGU UUGU UGUUGG UCGGUUUUCG@LB@3'-UUU...UCCCA A CUU A UU U G AG CAU GGUAG...UCA-5'@LB@ | |@LB@ 126 44@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -59.1156 kcal/mol@LB@Unfolding Energy - mRNA 19.0244 kcal/mol@LB@Unfolding Energy - sRNA 31.7466 kcal/mol@LB@@LB@Position - mRNA 155 -- 243@LB@Position - sRNA 45 -- 125@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 76 -- 82@LB@ |
23 |
0.0005914 |
0.08814 |
stm3466 |
crp |
-13.97 |
0.171291 |
272 -- 288 |
36 -- 50 |
transcriptional regulator Crp |
|
_____________271_______________________________289\n_____________|_________________________________|\n5'-ACG...CGAAA______CUAAA________________C_____UAAUA...AGG-3'\n______________GCUAUG_____ACAGACA____AGAUG_UACAG\n______________:|||||_____|||||||____|:|||_|||||\n______________UGAUAC_____UGUCUGU____UUUAC_AUGUC\n3'-UUU...AUUAG______C___________CCCA___________CUUCA...UCA-5'\n_____________|_________________________________|\n_____________51________________________________35\n |
21 -- 27 |
155 -- 161 |
-20.3438 kcal/mol |
4.64329 kcal/mol |
5.58455 kcal/mol |
271 289@LB@ | |@LB@5'-ACG...CGAAA CUAAA C UAAUA...AGG-3'@LB@ GCUAUG ACAGACA AGAUG UACAG@LB@ :||||| ||||||| |:||| |||||@LB@ UGAUAC UGUCUGU UUUAC AUGUC@LB@3'-UUU...AUUAG C CCCA CUUCA...UCA-5'@LB@ | |@LB@ 51 35@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -20.3438 kcal/mol@LB@Unfolding Energy - mRNA 4.64329 kcal/mol@LB@Unfolding Energy - sRNA 5.58455 kcal/mol@LB@@LB@Position - mRNA 272 -- 288@LB@Position - sRNA 36 -- 50@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 155 -- 161@LB@ |
147 |
0.007823 |
0.1845 |
stm3477 |
cysG |
-15.08 |
0.114738 |
192 -- 245 |
61 -- 111 |
uroporphyrinogen-III C-methyltransferase |
|
_____________191____________________________________________246\n_____________|______________________________________________|\n5'-UCC...UAAGG___AAU____________U____CU___UUUUGU____U_______CGCGA...AAG-3'\n______________GGU____GUCGUGGACCA_UUGC__AUA______CAAU_ACGCGAC\n______________|||____:|||::|||||_||||__|:|______|||:_||:|:||\n______________CCA____UAGCGUCUGGU_AACG__UGU______GUUG_UGUGUUG\n3'-UUU...UGGCA___GACU___________U____UU_____________U_______UAGUG...UCA-5'\n_____________|______________________________________________|\n_____________112____________________________________________60\n |
230 -- 236 |
72 -- 78 |
-36.0085 kcal/mol |
10.6439 kcal/mol |
13.6111 kcal/mol |
191 246@LB@ | |@LB@5'-UCC...UAAGG AAU U CU UUUUGU U CGCGA...AAG-3'@LB@ GGU GUCGUGGACCA UUGC AUA CAAU ACGCGAC@LB@ ||| :|||::||||| |||| |:| |||: ||:|:||@LB@ CCA UAGCGUCUGGU AACG UGU GUUG UGUGUUG@LB@3'-UUU...UGGCA GACU U UU U UAGUG...UCA-5'@LB@ | |@LB@ 112 60@LB@@LB@@LB@Energy -15.08 kcal/mol@LB@Hybridization Energy -36.0085 kcal/mol@LB@Unfolding Energy - mRNA 10.6439 kcal/mol@LB@Unfolding Energy - sRNA 13.6111 kcal/mol@LB@@LB@Position - mRNA 192 -- 245@LB@Position - sRNA 61 -- 111@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 72 -- 78@LB@ |
24 |
0.000609 |
0.08814 |
stm3510 |
yhgH |
-18.34 |
0.033208 |
106 -- 153 |
42 -- 84 |
DNA utilization protein GntX |
|
_____________105____________________________________154\n_____________|______________________________________|\n5'-CCG...UCCGU____________G__G___AUUUCCCUC__________UGCCA...GCG-3'\n______________GCAGCAGCACAA_AU_ACA_________GCCGUAGGUC\n______________:||:||:|||||_||_|||_________:|||||:|:|\n______________UGUUGUUGUGUU_UA_UGU_________UGGCAUUCGG\n3'-UUU...GUUUG____________G__G______________________UUUUC...UCA-5'\n_____________|______________________________________|\n_____________85_____________________________________41\n |
135 -- 141 |
58 -- 64 |
-35.7194 kcal/mol |
10.0869 kcal/mol |
11.5136 kcal/mol |
105 154@LB@ | |@LB@5'-CCG...UCCGU G G AUUUCCCUC UGCCA...GCG-3'@LB@ GCAGCAGCACAA AU ACA GCCGUAGGUC@LB@ :||:||:||||| || ||| :|||||:|:|@LB@ UGUUGUUGUGUU UA UGU UGGCAUUCGG@LB@3'-UUU...GUUUG G G UUUUC...UCA-5'@LB@ | |@LB@ 85 41@LB@@LB@@LB@Energy -18.34 kcal/mol@LB@Hybridization Energy -35.7194 kcal/mol@LB@Unfolding Energy - mRNA 10.0869 kcal/mol@LB@Unfolding Energy - sRNA 11.5136 kcal/mol@LB@@LB@Position - mRNA 106 -- 153@LB@Position - sRNA 42 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 58 -- 64@LB@ |
36 |
0.00125 |
0.1215 |
stm3523 |
glpR |
-16.55 |
0.065942 |
207 -- 266 |
37 -- 89 |
DeoR/GlpR family transcriptional regulator |
|
_____________206________________267\n_____________|__________________|\n5'-UUG...UGAAA__________________GCGAU...CGC-3'\n______________CAAACACAACGGCAUGAC\n______________||||||||||::||::||\n______________GUUUGUGUUGUUGUGUUG\n3'-UUU...UUAAC__________________UAGUG...UCA-5'\n_____________|__________________|\n_____________90_________________36\n |
218 -- 224 |
72 -- 78 |
-24.6143 kcal/mol |
5.8046 kcal/mol |
3.79561 kcal/mol |
206 267@LB@ | |@LB@5'-UUG...UGAAA GCGAU...CGC-3'@LB@ CAAACACAACGGCAUGAC@LB@ ||||||||||::||::||@LB@ GUUUGUGUUGUUGUGUUG@LB@3'-UUU...UUAAC UAGUG...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -16.55 kcal/mol@LB@Hybridization Energy -24.6143 kcal/mol@LB@Unfolding Energy - mRNA 5.8046 kcal/mol@LB@Unfolding Energy - sRNA 3.79561 kcal/mol@LB@@LB@Position - mRNA 207 -- 266@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 72 -- 78@LB@ |