15 |
0.000269 |
0.06194 |
stm3630 |
dppA |
-21.81 |
0.008578 |
158 -- 199 |
51 -- 92 |
ABC transporter substrate-binding protein |
|
_____________157_____________________________________200\n_____________|_______________________________________|\n5'-AUU...AGCCU______AGG___A__________________________AGAAG...AUU-3'\n______________UUGCAA___GCA_AACAACAU_ACAUCACAAUUG_GAGC\n______________||||||___:||_|||||||:_|||||||||::|_:|||\n______________AACGUU___UGU_UUGUUGUG_UGUAGUGUUGGC_UUCG\n3'-UUU...UGGUU____________G________U____________A____GUUUU...UCA-5'\n_____________|_______________________________________|\n_____________93______________________________________50\n |
183 -- 189 |
63 -- 69 |
-36.2763 kcal/mol |
6.81868 kcal/mol |
11.5217 kcal/mol |
157 200@LB@ | |@LB@5'-AUU...AGCCU AGG A AGAAG...AUU-3'@LB@ UUGCAA GCA AACAACAU ACAUCACAAUUG GAGC@LB@ |||||| :|| |||||||: |||||||||::| :|||@LB@ AACGUU UGU UUGUUGUG UGUAGUGUUGGC UUCG@LB@3'-UUU...UGGUU G U A GUUUU...UCA-5'@LB@ | |@LB@ 93 50@LB@@LB@@LB@Energy -21.81 kcal/mol@LB@Hybridization Energy -36.2763 kcal/mol@LB@Unfolding Energy - mRNA 6.81868 kcal/mol@LB@Unfolding Energy - sRNA 11.5217 kcal/mol@LB@@LB@Position - mRNA 158 -- 199@LB@Position - sRNA 51 -- 92@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 63 -- 69@LB@ |
46 |
0.001637 |
0.1267 |
stm2313 |
elaC |
-17.21 |
0.051329 |
250 -- 300 |
51 -- 90 |
ribonuclease Z |
stm1109 |
_____________249_____________________________________________301\n_____________|_______________________________________________|\n5'-UCG...CUCAC____UGUA________UUUAUUACAUCU________CAAC_______GGAG-3'\n______________GCAA____ACGGCAAU____________GCAACAUC____GCAGCCG\n______________||||____||::|||:____________:|||||||____:||:|||\n______________CGUU____UGUUGUUG____________UGUUGUAG____UGUUGGC\n3'-UUU...GUUAA____UG_________________________________________AUUCG...UCA-5'\n_____________|_______________________________________________|\n_____________91______________________________________________50\n |
290 -- 296 |
62 -- 68 |
-28.5454 kcal/mol |
7.10881 kcal/mol |
8.62576 kcal/mol |
249 301@LB@ | |@LB@5'-UCG...CUCAC UGUA UUUAUUACAUCU CAAC GGAG-3'@LB@ GCAA ACGGCAAU GCAACAUC GCAGCCG@LB@ |||| ||::|||: :||||||| :||:|||@LB@ CGUU UGUUGUUG UGUUGUAG UGUUGGC@LB@3'-UUU...GUUAA UG AUUCG...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -17.21 kcal/mol@LB@Hybridization Energy -28.5454 kcal/mol@LB@Unfolding Energy - mRNA 7.10881 kcal/mol@LB@Unfolding Energy - sRNA 8.62576 kcal/mol@LB@@LB@Position - mRNA 250 -- 300@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 62 -- 68@LB@ |
110 |
0.005337 |
0.1728 |
stm1920 |
cheW |
-12.58 |
0.277263 |
149 -- 192 |
51 -- 90 |
chemotaxis protein CheW |
|
_____________148__________193\n_____________|____________|\n5'-GUC...UGAUU____________AAUAA...UCC-3'\n______________GAGUGAGAAGGG\n______________:|||||:||:||\n______________UUCACUUUUUCC\n3'-UUU...UGUCC____________CAUCA...UCA-5'\n_____________|____________|\n_____________91___________50\n |
188 -- 194 |
128 -- 134 |
-15.4894 kcal/mol |
2.64754 kcal/mol |
3.77328 kcal/mol |
148 193@LB@ | |@LB@5'-GUC...UGAUU AAUAA...UCC-3'@LB@ GAGUGAGAAGGG@LB@ :|||||:||:||@LB@ UUCACUUUUUCC@LB@3'-UUU...UGUCC CAUCA...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -15.4894 kcal/mol@LB@Unfolding Energy - mRNA 2.64754 kcal/mol@LB@Unfolding Energy - sRNA 3.77328 kcal/mol@LB@@LB@Position - mRNA 149 -- 192@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 128 -- 134@LB@ |
17 |
0.0003055 |
0.06194 |
stm2694 |
N/A |
-22.95 |
0.005498 |
261 -- 295 |
52 -- 90 |
Fels-2 prophage protein |
|
_____________260_____________________________________296\n_____________|_______________________________________|\n5'-ACG...UAUCA_____________A_G____________AGU________UAUAA-3'\n______________GC___UACGACAA_A_AACGUUACAACC____GCCAAAA\n______________||___:||:||||_|_|||:|:||||||____|||||||\n______________CG___GUGUUGUU_U_UUGUAGUGUUGG____CGGUUUU\n3'-UUU...GUUAA__UUU________G_G____________CAUU_______CGGGU...UCA-5'\n_____________|_______________________________________|\n_____________91______________________________________51\n |
289 -- 295 |
52 -- 58 |
-35.4487 kcal/mol |
2.51857 kcal/mol |
14.0353 kcal/mol |
260 296@LB@ | |@LB@5'-ACG...UAUCA A G AGU UAUAA-3'@LB@ GC UACGACAA A AACGUUACAACC GCCAAAA@LB@ || :||:|||| | |||:|:|||||| |||||||@LB@ CG GUGUUGUU U UUGUAGUGUUGG CGGUUUU@LB@3'-UUU...GUUAA UUU G G CAUU CGGGU...UCA-5'@LB@ | |@LB@ 91 51@LB@@LB@@LB@Energy -22.95 kcal/mol@LB@Hybridization Energy -35.4487 kcal/mol@LB@Unfolding Energy - mRNA 2.51857 kcal/mol@LB@Unfolding Energy - sRNA 14.0353 kcal/mol@LB@@LB@Position - mRNA 261 -- 295@LB@Position - sRNA 52 -- 90@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 52 -- 58@LB@ |
67 |
0.003193 |
0.1596 |
stm0122 |
ftsI |
-11.87 |
0.349270 |
199 -- 241 |
52 -- 90 |
peptidoglycan glycosyltransferase FtsI |
|
_____________198_______________________242\n_____________|_________________________|\n5'-GUU...CGCGA____UUG_____UG___________CUGAU...UGG-3'\n______________UGCA___GACAU__AAUGGCGCAAC\n______________||||___:|||:__||:::|:||||\n______________ACGU___UUGUG__UUGUUGUGUUG\n3'-UUU...GGUUA_________________________UAGUG...UCA-5'\n_____________|_________________________|\n_____________91________________________51\n |
62 -- 68 |
72 -- 78 |
-17.673 kcal/mol |
4.85802 kcal/mol |
3.80548 kcal/mol |
198 242@LB@ | |@LB@5'-GUU...CGCGA UUG UG CUGAU...UGG-3'@LB@ UGCA GACAU AAUGGCGCAAC@LB@ |||| :|||: ||:::|:||||@LB@ ACGU UUGUG UUGUUGUGUUG@LB@3'-UUU...GGUUA UAGUG...UCA-5'@LB@ | |@LB@ 91 51@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -17.673 kcal/mol@LB@Unfolding Energy - mRNA 4.85802 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 199 -- 241@LB@Position - sRNA 52 -- 90@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 72 -- 78@LB@ |
104 |
0.005232 |
0.1728 |
stm0744 |
ybgC |
-16.85 |
0.058772 |
132 -- 175 |
54 -- 90 |
tol-pal system-associated acyl-CoA thioesterase |
|
_____________131_____________________________176\n_____________|_______________________________|\n5'-CUU...ACAAG____U____________UCUUGA________GGCGG...AAA-3'\n______________GCGA_AUACAACGGCAU______GGCAUUAC\n______________||:|_|:|||||::||:______::|||:||\n______________CGUU_UGUGUUGUUGUG______UUGUAGUG\n3'-UUU...GUUAA_______________________________UUGGC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________53\n |
156 -- 162 |
67 -- 73 |
-23.8418 kcal/mol |
6.2547 kcal/mol |
5.68203 kcal/mol |
131 176@LB@ | |@LB@5'-CUU...ACAAG U UCUUGA GGCGG...AAA-3'@LB@ GCGA AUACAACGGCAU GGCAUUAC@LB@ ||:| |:|||||::||: ::|||:||@LB@ CGUU UGUGUUGUUGUG UUGUAGUG@LB@3'-UUU...GUUAA UUGGC...UCA-5'@LB@ | |@LB@ 91 53@LB@@LB@@LB@Energy -16.85 kcal/mol@LB@Hybridization Energy -23.8418 kcal/mol@LB@Unfolding Energy - mRNA 6.2547 kcal/mol@LB@Unfolding Energy - sRNA 5.68203 kcal/mol@LB@@LB@Position - mRNA 132 -- 175@LB@Position - sRNA 54 -- 90@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 67 -- 73@LB@ |
142 |
0.007269 |
0.182 |
stm4341 |
frdC |
-12.15 |
0.319206 |
131 -- 234 |
54 -- 160 |
fumarate reductase subunit C |
|
_____________130__________________235\n_____________|____________________|\n5'-AGA...AGGAG_______________UA___GCAAA...CGG-3'\n______________UGC_AACAUGACGAC__AAC\n______________|||_||||::||:||__|||\n______________ACG_UUGUGUUGUUG__UUG\n3'-UUU...GGUUA___U___________UG___UAGUG...UCA-5'\n_____________|____________________|\n_____________161__________________53\n |
202 -- 208 |
77 -- 83 |
-18.8897 kcal/mol |
4.02107 kcal/mol |
3.80548 kcal/mol |
130 235@LB@ | |@LB@5'-AGA...AGGAG UA GCAAA...CGG-3'@LB@ UGC AACAUGACGAC AAC@LB@ ||| ||||::||:|| |||@LB@ ACG UUGUGUUGUUG UUG@LB@3'-UUU...GGUUA U UG UAGUG...UCA-5'@LB@ | |@LB@ 161 53@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -18.8897 kcal/mol@LB@Unfolding Energy - mRNA 4.02107 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 131 -- 234@LB@Position - sRNA 54 -- 160@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 77 -- 83@LB@ |
28 |
0.0007333 |
0.08814 |
stm0376 |
sbmA |
-15.26 |
0.107034 |
68 -- 102 |
55 -- 90 |
peptide transporter |
|
_____________67______________________________103\n_____________|_______________________________|\n5'-GCU...AGAAA_______UA____U______GUAG_______UGCCU...AUU-3'\n______________UGCGAAC__AGCG_CACAAC____GUCACAA\n______________|||:|||__|:|:_||||||____:||||||\n______________ACGUUUG__UUGU_GUGUUG____UAGUGUU\n3'-UUU...GGUUA_______UG____U_________________GGCAU...UCA-5'\n_____________|_______________________________|\n_____________91______________________________54\n |
99 -- 105 |
65 -- 71 |
-26.4432 kcal/mol |
7.11088 kcal/mol |
6.59083 kcal/mol |
67 103@LB@ | |@LB@5'-GCU...AGAAA UA U GUAG UGCCU...AUU-3'@LB@ UGCGAAC AGCG CACAAC GUCACAA@LB@ |||:||| |:|: |||||| :||||||@LB@ ACGUUUG UUGU GUGUUG UAGUGUU@LB@3'-UUU...GGUUA UG U GGCAU...UCA-5'@LB@ | |@LB@ 91 54@LB@@LB@@LB@Energy -15.26 kcal/mol@LB@Hybridization Energy -26.4432 kcal/mol@LB@Unfolding Energy - mRNA 7.11088 kcal/mol@LB@Unfolding Energy - sRNA 6.59083 kcal/mol@LB@@LB@Position - mRNA 68 -- 102@LB@Position - sRNA 55 -- 90@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 65 -- 71@LB@ |
154 |
0.008185 |
0.1845 |
stm3738 |
yigC |
-11.16 |
0.433331 |
228 -- 246 |
55 -- 74 |
similar to E. coli orf hypothetical protein (AAC76670.1); Blastp hit to AAC76670.1 (223 aa) 94% identity in aa 19 - 223 |
|
_____________227__________________247\n_____________|____________________|\n5'-UAA...ACCUC_____________AC_____AAAUG...UUA-3'\n______________GCA__UACAAUAA__CACAA\n______________|||__:||||:||__|||||\n______________CGU__GUGUUGUU__GUGUU\n3'-UUU...GUUAA___UU_______________GUAGU...UCA-5'\n_____________|____________________|\n_____________75___________________54\n |
27 -- 33 |
78 -- 84 |
-12.6647 kcal/mol |
0.985902 kcal/mol |
3.77104 kcal/mol |
227 247@LB@ | |@LB@5'-UAA...ACCUC AC AAAUG...UUA-3'@LB@ GCA UACAAUAA CACAA@LB@ ||| :||||:|| |||||@LB@ CGU GUGUUGUU GUGUU@LB@3'-UUU...GUUAA UU GUAGU...UCA-5'@LB@ | |@LB@ 75 54@LB@@LB@@LB@Energy -11.16 kcal/mol@LB@Hybridization Energy -12.6647 kcal/mol@LB@Unfolding Energy - mRNA 0.985902 kcal/mol@LB@Unfolding Energy - sRNA 3.77104 kcal/mol@LB@@LB@Position - mRNA 228 -- 246@LB@Position - sRNA 55 -- 74@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 78 -- 84@LB@ |
159 |
0.008305 |
0.1845 |
stm3625 |
yhjV |
-13.06 |
0.235438 |
203 -- 240 |
55 -- 86 |
transporter |
|
_____________202________________________241\n_____________|__________________________|\n5'-UUA...UAUUU_____________CUCUA________CGACA...UCU-3'\n______________UGGGCAG__GGGG______UGCAGGA\n______________|||:|||__:|||______|:|||||\n______________ACCUGUC__UCCC______AUGUCCU\n3'-UUU...GUGAU_______UG____AUUUAC_______UCACU...UCA-5'\n_____________|__________________________|\n_____________87_________________________54\n |
202 -- 208 |
139 -- 145 |
-24.2103 kcal/mol |
7.6176 kcal/mol |
3.71206 kcal/mol |
202 241@LB@ | |@LB@5'-UUA...UAUUU CUCUA CGACA...UCU-3'@LB@ UGGGCAG GGGG UGCAGGA@LB@ |||:||| :||| |:|||||@LB@ ACCUGUC UCCC AUGUCCU@LB@3'-UUU...GUGAU UG AUUUAC UCACU...UCA-5'@LB@ | |@LB@ 87 54@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -24.2103 kcal/mol@LB@Unfolding Energy - mRNA 7.6176 kcal/mol@LB@Unfolding Energy - sRNA 3.71206 kcal/mol@LB@@LB@Position - mRNA 203 -- 240@LB@Position - sRNA 55 -- 86@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 139 -- 145@LB@ |