| 112 |
0.005549 |
0.1728 |
stm0602 |
ybdH |
-14.01 |
0.169356 |
159 -- 193 |
39 -- 79 |
oxidoreductase |
|
_____________158_____________194\n_____________|_______________|\n5'-GCG...CCCUA_G_____________GAACC...AGC-3'\n______________A_GACAACACAACAU\n______________|_:||||||||||||\n______________U_UUGUUGUGUUGUA\n3'-UUU...GUUUG_G_____________GUGUU...UCA-5'\n_____________|_______________|\n_____________80______________38\n |
196 -- 202 |
70 -- 76 |
-18.8338 kcal/mol |
1.20586 kcal/mol |
3.77892 kcal/mol |
158 194@LB@ | |@LB@5'-GCG...CCCUA G GAACC...AGC-3'@LB@ A GACAACACAACAU@LB@ | :||||||||||||@LB@ U UUGUUGUGUUGUA@LB@3'-UUU...GUUUG G GUGUU...UCA-5'@LB@ | |@LB@ 80 38@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -18.8338 kcal/mol@LB@Unfolding Energy - mRNA 1.20586 kcal/mol@LB@Unfolding Energy - sRNA 3.77892 kcal/mol@LB@@LB@Position - mRNA 159 -- 193@LB@Position - sRNA 39 -- 79@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 166 |
0.009028 |
0.1932 |
stm1173 |
flgA |
-14.00 |
0.169768 |
53 -- 102 |
33 -- 85 |
flagella basal body P-ring formation protein FlgA |
|
_____________52__________________103\n_____________|___________________|\n5'-GCU...CCCUG___________GG______ACGCC...CCC-3'\n______________ACAAUGGCGCA__ACAUCA\n______________||||:::|:||__||||||\n______________UGUUGUUGUGU__UGUAGU\n3'-UUU...GUUUG___________________GUUGG...UCA-5'\n_____________|___________________|\n_____________86__________________32\n |
259 -- 265 |
74 -- 80 |
-16.6955 kcal/mol |
2.54166 kcal/mol |
4.84988 kcal/mol |
52 103@LB@ | |@LB@5'-GCU...CCCUG GG ACGCC...CCC-3'@LB@ ACAAUGGCGCA ACAUCA@LB@ ||||:::|:|| ||||||@LB@ UGUUGUUGUGU UGUAGU@LB@3'-UUU...GUUUG GUUGG...UCA-5'@LB@ | |@LB@ 86 32@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -16.6955 kcal/mol@LB@Unfolding Energy - mRNA 2.54166 kcal/mol@LB@Unfolding Energy - sRNA 4.84988 kcal/mol@LB@@LB@Position - mRNA 53 -- 102@LB@Position - sRNA 33 -- 85@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 23 |
0.0005914 |
0.08814 |
stm3466 |
crp |
-13.97 |
0.171291 |
272 -- 288 |
36 -- 50 |
transcriptional regulator Crp |
|
_____________271_______________________________289\n_____________|_________________________________|\n5'-ACG...CGAAA______CUAAA________________C_____UAAUA...AGG-3'\n______________GCUAUG_____ACAGACA____AGAUG_UACAG\n______________:|||||_____|||||||____|:|||_|||||\n______________UGAUAC_____UGUCUGU____UUUAC_AUGUC\n3'-UUU...AUUAG______C___________CCCA___________CUUCA...UCA-5'\n_____________|_________________________________|\n_____________51________________________________35\n |
21 -- 27 |
155 -- 161 |
-20.3438 kcal/mol |
4.64329 kcal/mol |
5.58455 kcal/mol |
271 289@LB@ | |@LB@5'-ACG...CGAAA CUAAA C UAAUA...AGG-3'@LB@ GCUAUG ACAGACA AGAUG UACAG@LB@ :||||| ||||||| |:||| |||||@LB@ UGAUAC UGUCUGU UUUAC AUGUC@LB@3'-UUU...AUUAG C CCCA CUUCA...UCA-5'@LB@ | |@LB@ 51 35@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -20.3438 kcal/mol@LB@Unfolding Energy - mRNA 4.64329 kcal/mol@LB@Unfolding Energy - sRNA 5.58455 kcal/mol@LB@@LB@Position - mRNA 272 -- 288@LB@Position - sRNA 36 -- 50@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 155 -- 161@LB@ |
| 58 |
0.002307 |
0.14 |
stm2234 |
N/A |
-13.92 |
0.174542 |
131 -- 196 |
38 -- 89 |
phage tail protein |
stm2705 stm2233 |
_____________130______197\n_____________|________|\n5'-CUG...UACAC________AUCCA...CAG-3'\n______________CAGACAGG\n______________||||||||\n______________GUCUGUCC\n3'-UUU...UACCU________CAUUU...UCA-5'\n_____________|________|\n_____________90_______37\n |
132 -- 138 |
153 -- 159 |
-13.9425 kcal/mol |
2.61206 kcal/mol |
2.72972 kcal/mol |
130 197@LB@ | |@LB@5'-CUG...UACAC AUCCA...CAG-3'@LB@ CAGACAGG@LB@ ||||||||@LB@ GUCUGUCC@LB@3'-UUU...UACCU CAUUU...UCA-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -13.9425 kcal/mol@LB@Unfolding Energy - mRNA 2.61206 kcal/mol@LB@Unfolding Energy - sRNA 2.72972 kcal/mol@LB@@LB@Position - mRNA 131 -- 196@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 45 |
0.001635 |
0.1267 |
stm2351 |
hisP |
-13.82 |
0.180688 |
258 -- 282 |
115 -- 140 |
histidine and lysine/arginine/ornithine transport protein |
|
_____________257__________________________283\n_____________|____________________________|\n5'-UAC...GUCAU______CU____________________AGGCC...AUG-3'\n______________GAAGUG__GAAAGGGGUA___UCGCUGC\n______________||||||__:|||:|||||___|||||:|\n______________CUUCAC__UUUUUCCCAU___AGCGAUG\n3'-UUU...AUGUC__________________CAG_______GCACC...UCA-5'\n_____________|____________________________|\n_____________141__________________________114\n |
276 -- 282 |
115 -- 121 |
-29.6028 kcal/mol |
6.54228 kcal/mol |
8.52785 kcal/mol |
257 283@LB@ | |@LB@5'-UAC...GUCAU CU AGGCC...AUG-3'@LB@ GAAGUG GAAAGGGGUA UCGCUGC@LB@ |||||| :|||:||||| |||||:|@LB@ CUUCAC UUUUUCCCAU AGCGAUG@LB@3'-UUU...AUGUC CAG GCACC...UCA-5'@LB@ | |@LB@ 141 114@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -29.6028 kcal/mol@LB@Unfolding Energy - mRNA 6.54228 kcal/mol@LB@Unfolding Energy - sRNA 8.52785 kcal/mol@LB@@LB@Position - mRNA 258 -- 282@LB@Position - sRNA 115 -- 140@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 115 -- 121@LB@ |
| 194 |
0.01081 |
0.197 |
stm1954 |
fliY |
-13.82 |
0.181182 |
183 -- 228 |
153 -- 193 |
cystine ABC transporter substrate-binding protein |
|
_____________182________________________229\n_____________|__________________________|\n5'-CAG...GUCUA_________AC____AUAUU______UACUA...UGC-3'\n______________UGGUCAUUA__GGCA_____CGGGGU\n______________|::|||:||__|:||_____|:||||\n______________AUUAGUGAU__CUGU_____GUCCCA\n3'-UUU...AUGUA_________AC____CU_________UUUAC...UCA-5'\n_____________|__________________________|\n_____________194________________________152\n |
173 -- 179 |
165 -- 171 |
-18.5851 kcal/mol |
4.12345 kcal/mol |
4.10259 kcal/mol |
182 229@LB@ | |@LB@5'-CAG...GUCUA AC AUAUU UACUA...UGC-3'@LB@ UGGUCAUUA GGCA CGGGGU@LB@ |::|||:|| |:|| |:||||@LB@ AUUAGUGAU CUGU GUCCCA@LB@3'-UUU...AUGUA AC CU UUUAC...UCA-5'@LB@ | |@LB@ 194 152@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -18.5851 kcal/mol@LB@Unfolding Energy - mRNA 4.12345 kcal/mol@LB@Unfolding Energy - sRNA 4.10259 kcal/mol@LB@@LB@Position - mRNA 183 -- 228@LB@Position - sRNA 153 -- 193@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 165 -- 171@LB@ |
| 114 |
0.005594 |
0.1728 |
stm4557 |
holD |
-13.75 |
0.185681 |
35 -- 94 |
141 -- 186 |
DNA polymerase III subunit psi |
|
_____________34_____________________________________________95\n_____________|______________________________________________|\n5'-AGG...AAAUC__________C____CAAGACUUCACUUGC_________A______ACAUG...UUC-3'\n______________AUCACUGUGG_GCAG_______________CGGGGUAAA___GCAG\n______________||||||:|||_:|||_______________|:|||||||___:|||\n______________UAGUGAUACC_UGUC_______________GUCCCAUUU___UGUC\n3'-UUU...GUAAU_______________U_______________________ACA____CUUCA...UCA-5'\n_____________|______________________________________________|\n_____________187____________________________________________140\n |
83 -- 89 |
148 -- 154 |
-31.7183 kcal/mol |
12.8981 kcal/mol |
5.60568 kcal/mol |
34 95@LB@ | |@LB@5'-AGG...AAAUC C CAAGACUUCACUUGC A ACAUG...UUC-3'@LB@ AUCACUGUGG GCAG CGGGGUAAA GCAG@LB@ ||||||:||| :||| |:||||||| :|||@LB@ UAGUGAUACC UGUC GUCCCAUUU UGUC@LB@3'-UUU...GUAAU U ACA CUUCA...UCA-5'@LB@ | |@LB@ 187 140@LB@@LB@@LB@Energy -13.75 kcal/mol@LB@Hybridization Energy -31.7183 kcal/mol@LB@Unfolding Energy - mRNA 12.8981 kcal/mol@LB@Unfolding Energy - sRNA 5.60568 kcal/mol@LB@@LB@Position - mRNA 35 -- 94@LB@Position - sRNA 141 -- 186@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 148 -- 154@LB@ |
| 169 |
0.009276 |
0.1945 |
stm0495 |
ybaK |
-13.73 |
0.186840 |
16 -- 30 |
44 -- 58 |
aminoacyl-tRNA deacylase |
|
_____________15_________________31\n_____________|__________________|\n5'-AAA...CAUUC____CU__G_________CGAAU...UGG-3'\n______________ACAC__AC_AUCACGAUC\n______________||||__||_|||||:|:|\n______________UGUG__UG_UAGUGUUGG\n3'-UUU...GUUGU____U_____________CAUUC...UCA-5'\n_____________|__________________|\n_____________59_________________43\n |
264 -- 270 |
63 -- 69 |
-14.6876 kcal/mol |
0.727125 kcal/mol |
6.44907 kcal/mol |
15 31@LB@ | |@LB@5'-AAA...CAUUC CU G CGAAU...UGG-3'@LB@ ACAC AC AUCACGAUC@LB@ |||| || |||||:|:|@LB@ UGUG UG UAGUGUUGG@LB@3'-UUU...GUUGU U CAUUC...UCA-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -14.6876 kcal/mol@LB@Unfolding Energy - mRNA 0.727125 kcal/mol@LB@Unfolding Energy - sRNA 6.44907 kcal/mol@LB@@LB@Position - mRNA 16 -- 30@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 101 |
0.005112 |
0.1728 |
stm0113 |
leuA |
-13.72 |
0.187230 |
187 -- 230 |
37 -- 84 |
2-isopropylmalate synthase |
|
_____________186_____________________231\n_____________|_______________________|\n5'-AUA...UGGAG____G_____________G____AGCAA...UGG-3'\n______________ACAA_GAC_C_ACAUCAU_AGCC\n______________||||_:||_|_||||||:_|:||\n______________UGUU_UUG_G_UGUAGUG_UUGG\n3'-UUU...GUUUG____G___U_U____________CAUUC...UCA-5'\n_____________|_______________________|\n_____________85______________________36\n |
196 -- 202 |
67 -- 73 |
-19.8594 kcal/mol |
2.76514 kcal/mol |
8.15907 kcal/mol |
186 231@LB@ | |@LB@5'-AUA...UGGAG G G AGCAA...UGG-3'@LB@ ACAA GAC C ACAUCAU AGCC@LB@ |||| :|| | ||||||: |:||@LB@ UGUU UUG G UGUAGUG UUGG@LB@3'-UUU...GUUUG G U U CAUUC...UCA-5'@LB@ | |@LB@ 85 36@LB@@LB@@LB@Energy -13.72 kcal/mol@LB@Hybridization Energy -19.8594 kcal/mol@LB@Unfolding Energy - mRNA 2.76514 kcal/mol@LB@Unfolding Energy - sRNA 8.15907 kcal/mol@LB@@LB@Position - mRNA 187 -- 230@LB@Position - sRNA 37 -- 84@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 42 |
0.001433 |
0.1215 |
stm1318 |
katE |
-13.62 |
0.194137 |
191 -- 230 |
43 -- 82 |
catalase HPII |
|
_____________190_________231\n_____________|___________|\n5'-GGC...UCUGC___________UCCCC...AUC-3'\n______________CGUUCCG_CUC\n______________|||||||_|||\n______________GCAAGGC_GAG\n3'-UUU...GAAAA_______C___UCCUUCA-5'\n_____________|___________|\n_____________83__________42\n |
99 -- 105 |
12 -- 18 |
-14.968 kcal/mol |
1.4568 kcal/mol |
6.53351 kcal/mol |
190 231@LB@ | |@LB@5'-GGC...UCUGC UCCCC...AUC-3'@LB@ CGUUCCG CUC@LB@ ||||||| |||@LB@ GCAAGGC GAG@LB@3'-UUU...GAAAA C UCCUUCA-5'@LB@ | |@LB@ 83 42@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -14.968 kcal/mol@LB@Unfolding Energy - mRNA 1.4568 kcal/mol@LB@Unfolding Energy - sRNA 6.53351 kcal/mol@LB@@LB@Position - mRNA 191 -- 230@LB@Position - sRNA 43 -- 82@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 12 -- 18@LB@ |
